Array 1 39450-36979 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVOE01000013.1 Salmonella enterica subsp. enterica serovar Senftenberg strain P5558 NODE_13_length_132015_cov_17.4379_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39449 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 39388 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 39327 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 39266 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 39205 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 39144 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 39083 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 39022 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 38961 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 38900 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 38839 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 38778 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 38717 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 38656 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 38595 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 38534 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 38473 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 38412 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 38351 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 38290 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 38229 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 38168 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 38107 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 38046 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 37985 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 37924 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 37863 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 37801 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 37740 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 37679 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 37618 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 37557 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 37496 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 37435 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 37374 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 37313 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 37252 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 37191 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 37130 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 37069 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 37008 29 100.0 0 ............................. | A [36981] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58565-55994 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVOE01000013.1 Salmonella enterica subsp. enterica serovar Senftenberg strain P5558 NODE_13_length_132015_cov_17.4379_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58564 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 58503 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 58442 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 58381 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 58320 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 58259 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 58198 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 58137 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 58076 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 58015 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 57954 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 57893 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 57832 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 57771 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 57710 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 57649 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 57588 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 57527 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 57466 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 57405 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 57344 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 57241 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 57180 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 57119 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 57058 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 56997 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 56936 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 56875 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 56814 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 56753 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 56692 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 56631 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 56570 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 56509 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 56448 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 56387 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 56326 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 56265 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 56204 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 56143 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 56082 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 56021 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 42 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //