Array 1 82175-83332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADX010000011.1 Streptococcus agalactiae strain iGBS338 NODE_11_length_83373_cov_90.03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82175 36 100.0 30 .................................... AATTGTATTCTAATGTCATTCGTGTAATTC 82241 36 100.0 30 .................................... CCGCTTGCTTTACCAATCATCAAATACAGT 82307 36 100.0 30 .................................... AGTATACATCTTCTAAGAACCCCTCACAAT 82373 36 100.0 30 .................................... AACAAATTTTGGATTGACGTTCCAGTAACT 82439 36 100.0 30 .................................... AGTTAGACCTAATAAAATCGCAGTTGCGAG 82505 36 100.0 30 .................................... ATCTATCATTAGACTTGTTTTCTGATATGT 82571 36 100.0 30 .................................... TAATCCTCGAAGTATTTTTATTAACCCAGT 82637 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 82703 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 82769 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 82835 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 82901 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 82967 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 83033 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 83099 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 83165 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 83231 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 83297 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAATTACAGTTTCGACTGATTATGGAAATGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 272709-272475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADX010000002.1 Streptococcus agalactiae strain iGBS338 NODE_2_length_272749_cov_77.6428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 272708 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 272642 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 272576 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 272510 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGTTCCAAAACCAAATTACAGTTTCGACTGATTATGGAAA # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //