Array 1 9378-10539 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQH01000218.1 Delftia sp. BR1 IonXpress_015_rawlib.basecaller_c218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9378 32 100.0 34 ................................ TCGTCGGTGTAGGACTGGCCGCAGAAGTGGCCGG 9444 32 100.0 34 ................................ TGGCTGAGACTGCAGCCCTGCGTGAGGCAGCGAA 9510 32 100.0 36 ................................ GATCAGCCCAGCAGCAGGGCCATGTGCTCGCGCTTG 9578 32 100.0 36 ................................ GGCGAGCAGATCAAAAATCGGCTCTACGTAGTCATC 9646 32 100.0 34 ................................ AGCTACGGCCCGTATCGCTTGGCCTGGGGTGTTT 9712 32 100.0 34 ................................ AGAAGCGCGATGATGCGCGCCACGACTCCGTTGT 9778 32 100.0 34 ................................ ATCTCGTCATGCAGTTTGGACACCTTGCCGTCCA 9844 32 100.0 34 ................................ ACAGGAGACATCGCCGTGCCCTCAGCTGCCCCGC 9910 32 100.0 36 ................................ CGCACTGCCCGCGACAAGCTGAAGGACGGCCGGCCG 9978 32 100.0 35 ................................ ACGATCACCAGGTCGCCGTCGCGCTCGAAGTCCAG 10045 32 100.0 36 ................................ ATGAGCAGGGCCGTCAGCATGATGCCCGCGGCAATG 10113 32 100.0 33 ................................ AGGTGCTCGGTGCTGTGGCCCAGCTCGAAAGGT 10178 32 100.0 35 ................................ CTGGCCTCCACGGGCTACAAGGCCACCCTGCAGGC 10245 32 100.0 33 ................................ TCGCCGGCCCGGTAGGCGCGGTCTGCAGACTCG 10310 32 100.0 32 ................................ TGGCCCGCTACATGGCCCCCGCCGGCGATGAC 10374 32 100.0 35 ................................ TCCCCATGCGAAGCAGTCGGCCATCATTTGTGATC 10441 32 100.0 35 ................................ CAGACTGCGCCCGAGGGCTTGGCCACGCCGCCTCC 10508 32 90.6 0 ..........A.......AT............ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAAAGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCAGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCGGGCAGCTGATCGGCTTGCGGCTGCGCATGCTGATGAAGAGCGGCCTTAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCTGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTTTGCAGTGGTGCGGCTGGGTTATAAGCATGCC # Right flank : CATGGCCATCAAGCGCGAAATGACGGTTCGTGCAATCGCTGACAGCCCGATGCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACACGACTGATTCAAATTGTCAAATTTGTTCCTGAATGTGTTTCCTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTCGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12044-10754 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQH01000148.1 Delftia sp. BR1 IonXpress_015_rawlib.basecaller_c148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12043 28 100.0 32 ............................ ATCTCCTGTACGCGCGCGGCTGGAAAACCATC 11983 28 100.0 32 ............................ ACCAGGGGCCGCGAGCCCGTACACCTTGCGGG 11923 28 100.0 32 ............................ AAGATCGCAGCTGCTACTCAAGCCGACCAGGC 11863 28 100.0 32 ............................ GAAGAAATGACGCTCATCGACGTTCCGGTGCA 11803 28 100.0 33 ............................ TTTCGCCATCGCCCTGGCCAAGGAGGAGGAGAA 11742 28 100.0 32 ............................ AGGGATCGAGCACTCGCGCAGGTAGCGGGCAT 11682 28 100.0 32 ............................ GAACAGGCTGTCCTCGGTCTCGAAGAACCCAG 11622 28 100.0 32 ............................ AGAGTGGAGGGAGGACGCTGGCATCTGGACGA 11562 28 100.0 32 ............................ ATGAGCAAAAGAGCCCGCGAGCGCGGCGACAA 11502 28 100.0 32 ............................ ATCAAAAAGATAGGGCAAAAATCCCCCACCAC 11442 28 100.0 32 ............................ AGAGTGGTGCGTCTATGTCGAGACGCCCGGAT 11382 28 96.4 32 ............A............... TTGACGCAGGAGTAGATGCCATCGGCATCTAC 11322 28 96.4 32 ............A............... TGATCGCCTGGGCCTACAGCGGCAAGCCCATG 11262 28 96.4 32 ............A............... ATCCAGTCAAGGGCCATCCCGGTGTCGCTGAT 11202 28 96.4 33 ............A............... CGAAGTCAAACAAGTGCCTCGCGATCACCTGCG 11141 28 96.4 32 ............A............... AGTCTTTGGGCGGCAGCCTGAGGCCGGCGCGG 11081 28 96.4 32 ............A............... TACAGCGAGACGGTGCGGGACGGGGTGAACAA 11021 28 92.9 32 .G..........A............... AGCATCGGCCTTCGCCCGCTTTGTCGATGCGC 10961 28 96.4 32 ............A............... ATTCCCACGGTGCCTTTGCCGTATCGCTCGTT 10901 28 92.9 32 ............A.G............. TGGCTCAAGGCCCTGGCCTGGTGCCTGCTCGC 10841 28 92.9 32 ............A..............G CCCGCAGCCCTCCCGGTATGCCGCGAGGGCTT 10781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.9 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGAGCAGCCCTGGCTGCAGGGCATGCGCGATCATGTGCACTGCACGCCACCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTGCCTGGTGCAGCGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGACGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCATGGCGGGCCAGGACGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGTGGCCTGTGGGGTCGCCTTTCAAATCAACAACTTGGCGACGCCTCGGAATTTTGGGGTGTTTTCGGGTTAGGGGTGAAAGTTCTTTAAAAATCAATGAATTGGGAGGATTTTTGTCTA # Right flank : GGCTGCTGACTTGGAGGCGACAGAGAAGCCTCTGCATTCAACCCTCCGGGCCATGCTCCGCGTATTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAGGAGCAGTTTCAGGCGCCGGGCGTAGAGACTGTGTGGACGATTGAAGGCCTGGGCGGCCAGGGCGATGGCTGCGCGGGCGAGGTACCACTCGTTGTCGAATTCACTGGCGTCCTCGAATACCTTGTGCCGAATTTGCCGGATGTGGTTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCGACATCCGCGTCATGCCAGTGCATGTCGGCACAGCGTGTTTCGATCAGGGCAACCAGCCCCATCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTGGGCCAGGCAGCGGTGTCCATCGTGCAGGGCTCGTTCGTTGAGTGCCGTGACGCAGCCATATCGATTCCTTTGTCGTCGCTTCAATGACTCGGGCTTTCTATGCACGATCTATGCACT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //