Array 1 1141783-1139218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018187.1 Streptococcus salivarius strain ICDC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1141782 36 100.0 35 .................................... TAAATGTAATGAATTCAAAAGTCCAATCAGAAAGT 1141711 36 100.0 37 .................................... CCCATAAGTGCATTTTCAGCGTCGTGGTAAGCAACGA 1141638 36 94.4 37 ..............T.................T... CATAGACCTTTAATCATAAATGTGTCTTTGTCATTAC 1141565 36 83.3 36 .............AT..........A......TC.T ACTAAGGCTGTTTTTCTCATGTCTTTCACAAAGTAG 1141493 36 97.2 34 .....................C.............. CAACCCAACATTTTATTTTCTCCTTATTCTTAAC 1141423 36 86.1 36 .......C.....AT................AT... TCTTTGAAGTCGTCCGCTTACGCTAATTAGTTGCCC 1141351 36 91.7 38 .............C.......C..........T... TGTCATGATATAATCTCCTTGTAAATGTTTTTACTTTC 1141277 36 86.1 33 ...........G.GT......G..........T... AATCCACAAATTCCTTGTAGTAATGAATATCTT 1141208 36 97.2 37 .............C...................... TCAAAGGTTGCGGTTCATCCGCTTCAGGTAGAGGTGC 1141135 36 86.1 38 .C...........GT......G..........T... CATTTTCAGATACATATAGCTCAACAAGTTTGTTTACT 1141061 36 86.1 36 .G...........AT......C...T.......... AACTAAATATCGCTATATATCTCATCGTCAATCTGA 1140989 36 88.9 38 .............AT......CA............. CGTACTTGTCCTTGAATGTATCCTTGTCTAGTCCTGCT 1140915 36 91.7 37 ....C................T..........T... TTCCATTTCTTGGTTGCTTTTGTTTGTGCGTCCATTA 1140842 36 88.9 39 .............ATG.....C.............. TCCACAACCACAGCGTCTATATAACCTTGGAAATGCTGT 1140767 36 88.9 37 .............AT......G..........T... ATAAATTCTTGTTGGGCTTTTCCGTCATAACCACAGG 1140694 36 88.9 37 .............ATG.....C.............. ACCTTGTCACCTTCGTTTACTGGAATATCGTCTGGGA 1140621 36 88.9 39 .......C......T......G..........T... TGGCTTCTTCTTTGTATGTATCATCATATTTTACGAACT 1140546 36 88.9 37 .......C.....CT......C.............. CAAAACGTTAAAAGCGTATTCTTGCAATTCTTGAAGT 1140473 36 94.4 37 .............C.......C.............. TCATCTTTTGATTGATTGATAGCTAATGTTCCTTTGC 1140400 36 88.9 35 .............C............A.......CA TCTGAGCGTCCTAATTCGTGCAGAATGACCTTTAA 1140329 36 97.2 36 ................................T... ACCCATAGCCCCACCGTGTCATGTTTCAATGTTTTA 1140257 36 88.9 38 ..............T.T....C..........T... CCATTACGAGATTTAATGTAGAAGCACTCTTATCATGG 1140183 36 91.7 36 .............GT....T................ CCAAAGACTTATAACTAATCAAATCATCAAGACTAC 1140111 36 91.7 37 .............AT.................T... TTTGCTTCTTCCAACTCAATCAAGAGGTTTTCGTTTT 1140038 36 86.1 35 ..........C..AT.....A........T...... ATATTATAAAGCGTTGTCCTGTTTCATTTCATTGA 1139967 36 94.4 36 ..............T......T.............. TATCGGATATTCTCCAAGTTTTTTTCAATCCATTCG 1139895 36 91.7 36 .............AT......C.............. CTTGTTGATGTTTCTTTACTCTGAGTTTGACTTACG 1139823 36 91.7 37 ...G.................C...A.......... GACGGCCTGAAACTAGACCTAATTCGATTTTTCCTTG 1139750 36 97.2 32 ..............T..................... CGTTTATTAATTACCTTACGTGTAAAATCATT 1139682 36 94.4 34 .............CT..................... TGCTTTTGTTTAACTAAAAATAGTTAAATCTGCA 1139612 36 91.7 36 ............C........CA............. TCAATCCACTTTTGAATAGTCATAATAGTTTCAAGG 1139540 36 83.3 34 ............CCT....T.C..A........... CATTTTGAATACGGTGTGAAATTGCCGCTGCTGT 1139470 36 94.4 38 .............C.......C.............. GCTTGCGCTTTGGCAGGACGTGCGAATACAGACACTGC 1139396 36 94.4 36 .............AT..................... CCTCCCTTTTGATTAAGGATAGCTAGTATTTTGTCT 1139324 36 88.9 35 ........T....CT.................G... ACTTTCAATAGCATATTGTGAGCGTTCGCTTCTTT 1139253 36 77.8 0 .............AT...............CTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 36 36 90.9 36 GATATAAACCTATTCACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTGTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGCGAAGAAGAGCGTGAGTTTGCGAGACAAAGAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAATAAACGAAGACTTAAACACTCCAAATTACTTGAGGGTTATGGTGTGAGGGTACAAAAATCCTGTTTCGAGGTCGATTTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGTTTCTACAAGGCTGATGAAGAAGACAGTATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATATAGATAATGTTTCCAGTAGGTCCTACATCTTGTGTCTCTAGCAACTGTCTAGGGCACAAGATATGGG # Right flank : GAAAATTTTGGAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTACCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTGCATCTGCTTACAGATGACCTAGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACTTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTATTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAGA # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTCACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //