Array 1 1892791-1895546 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698959.1 Ruminococcus champanellensis isolate MGYG-HGUT-01375 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1892791 32 100.0 35 ................................ TTTGAAAATTTTCATTTATAATACAAGTAGAAAAT 1892858 32 100.0 34 ................................ CTGTACAATGCCAACTGCAACCGAGGAAGCCAAG 1892924 32 100.0 34 ................................ GATATAATGCCGGAATTATTCCAGATGTCTCCCT 1892990 32 100.0 34 ................................ TTTGAAAATTTTCATTTATAATACAAGTAGAAAA 1893056 32 100.0 33 ................................ GTAGTATCTGGAAATTGCGCCGGATGGTTGGGC 1893121 32 100.0 33 ................................ TACAATTATTTACTCGCTCGCGCTGTGCCTTCG 1893186 32 100.0 33 ................................ CCTCCGCCCCGTCTGCAGGGCGGTATTGATAGA 1893251 32 100.0 34 ................................ CATCATTGGGAGTATTACCAGTAAACGGCGTTTG 1893317 32 100.0 33 ................................ GTTTTCCTCTCTGATAATATTTGTAACCGCCAT 1893382 32 100.0 34 ................................ TTGAAAACATGGAGGCAACATATGTAATGGTTTT 1893448 32 100.0 35 ................................ TATCGTGTTCCATGTCTGTTAAAGCGAATCCGAAG 1893515 32 100.0 34 ................................ TGATAGAAAAAGGAACTGCTACAACTATTCAAAA 1893581 32 100.0 36 ................................ TGGCCTATCGAACAGAAGCAAATTTGATTGCTGAAA 1893649 32 100.0 37 ................................ TCTTCCTCATAAATTCCATATACGTGAAATTCAGTCC 1893718 32 100.0 34 ................................ TTCCGGTGGTGCTGGATGGATGGCTACCAGAAAT 1893784 32 100.0 38 ................................ AATTCATGTAGGGGACTACATAATCGAAGACGGAAAAA 1893854 32 100.0 34 ................................ TTTTCTTTTGAATGCTGTTTCCGTATTTGTTGTT 1893920 32 100.0 35 ................................ TCTTGCAAGAAAAAATTTAATGAATATATGAAAGC 1893987 32 100.0 34 ................................ GACTAAAAAAGACAATGGCTAAACCAAAAAAGAA 1894053 32 100.0 34 ................................ TCTGAAGATAGTGCTGATAGCACACGTTCTGTTC 1894119 32 100.0 37 ................................ TTAGTCTTCCAGTTGTAGTAAGTCTTACCCTGCCAAT 1894188 32 100.0 34 ................................ GTTTTTTCGCCTCGTCTCCTCCCACGTCCGTGCT 1894254 32 100.0 35 ................................ CCATTATTCGTCTTTTACGCACCAATAGCCATTCG 1894321 32 100.0 32 ................................ TTAAATGTTTGAGAATTGGAAAGAAAGAAAGT 1894385 32 100.0 34 ................................ TCAAATATTCTTCTTCTTTCCCGACTACGCCTTT 1894451 32 100.0 33 ................................ AATGACATATGGGAACATATAGAAGAAAAGGGT 1894516 32 100.0 37 ................................ TTGCGCCGGGGGCACCAGCTCCAGCAGCTGTTTGATG 1894585 32 100.0 34 ................................ CCAGTATTTGGAGTGCCTGCGTCCGCAGTTTAAA 1894651 32 100.0 36 ................................ CCGCCGCCTGCAATCAGGGCGGTGATAGCCATTCCA 1894719 32 100.0 35 ................................ CACCGCCTGGTCAGTGTCGCCCAACACGCCCTGCA 1894786 32 100.0 34 ................................ TTGTCCTATTCAGAACCCCAAAATAGCGTTAAGA 1894852 32 100.0 34 ................................ GATGGCAGAACCAACCATGAAAAGAACCTGCCGG 1894918 32 100.0 33 ................................ GAAAGTTCCCACGTCAAGAATTGTATCCTTAAT 1894983 32 100.0 33 ................................ TAGTCACATCAGAGCCAACAGAACCCATCTTAA 1895048 32 100.0 35 ................................ GGATTATTCCAAAATAAGACACTCTGAAACTGAAA 1895115 32 100.0 34 ................................ GTTTGCGTTCTTTTTCCTCTGTTTCAAAACGTTT 1895181 32 100.0 34 ................................ TGCCGTTTCGATGGTTGAAGTAACCAACAAGGAA 1895247 32 100.0 35 ................................ CTCTGATAATGTTTGTTACTGCCATTCCATACAGG 1895314 32 100.0 34 ................................ TTTGGAAATTGGCGTTTTTCAGTGCTTTGTTGAT 1895380 32 100.0 37 ................................ TATTTGCAACTGCCATATATACATAATGGATGTTTTC 1895449 32 100.0 34 ................................ ACCATTCCATAACCATTTACTGCCAACTGCCAAA 1895515 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 42 32 100.0 34 GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Left flank : CAAGTATGTGCGGGGGGAGATATCTGAGTATCCTTGCTATTTATTAAAGTAGGTGATGGACATGATGGTTTTAGTCAGCTATGATGTATCCACGGTCGATCAAAAGGGAAGGGCTCGTCTGCGGAAGGTTGCAAAAGCATGCCAGAATTACGGACAACGGGTGCAGAATTCCGTGTTTGAAATTGATTTGGACTACGGAACCTTTTGCAGGGTAAAAGAAAAACTGATGCAGTTAATTGATGTGCAAAAGGACAGCCTTCGCTTTTATTATCTCGGAAACAATTGGCACAGACGAGTGGAGCATTTTGGCGCTAAGGATACCTATGATCCGGAAGGCGCATTGATTTTGTGATCTGCGAACTGCCGGTAATTTGATTTTTGTGGGTTGTTCGCAAGGAAATGTCGCATGATTGTGAATAAGCAATGAACAAAATAGCGCTGTTTTGCGCATAAAAGTCTGTCCCGTGTGAGGGTATGACCTTGGAGACACAATATCTAGG # Right flank : TATCAACTGGAATTCCAAGCGATTCAGATAGTAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACGCCCTACACGGGCGTGTGAGTTGAAATGAATGTTTACGGGTGAACGCTAAAAGATACACCCGTCACGCCCTACACGGGCGTGTGAGTTGAAATGCAGAAAAGCCTCTGAGGAAAAAGCATTCACTACGTCACGCCCTACACGGGCGTGTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCCCACACGGGCGTGGGAGTAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1895888-1896920 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698959.1 Ruminococcus champanellensis isolate MGYG-HGUT-01375 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1895888 32 100.0 34 ................................ GAATGTTTACGGGTGAACGCTAAAAGATACACCC 1895954 32 100.0 34 ................................ GCAGAAAAGCCTCTGAGGAAAAAGCATTCACTAC 1896020 32 100.0 37 ................................ CGACCTGATCGGGGAAGATAACCGGGCGCTGGCGCCT 1896089 32 100.0 35 ................................ TTACGATCCCAAAACCCGCACCATCGTCCACACGA 1896156 32 100.0 36 ................................ CTGTCGCTGTGACAGCGCAGATTTCCAAGCAGGCAA 1896224 32 100.0 34 ................................ CGTCGATCATGTCATCCCGCAGGGCTGACATGGC 1896290 32 96.9 34 .....A.......................... GCCAGATAATGGTACTTGGTGACAAAACCAACCA 1896356 32 100.0 34 ................................ TAACAGGGCTACCACATCCGCCGAAAATTCCCGA 1896422 32 100.0 33 ................................ ATTGATGAAATCGGCACTCTGTTCAATTCCCGG 1896487 32 100.0 36 ................................ TCACGGGGTTGGGCGGGGAACACCCCGCCCGAGAAG 1896555 32 100.0 36 ................................ ACAGTTATATAAATTAAGATAATTTGATATGTTCCC 1896623 32 100.0 35 ................................ AAATGCAAAAAAATCTGAAATGGGGCAAGTTGTCA 1896690 32 100.0 34 ................................ TTGCCCGGTGCCGCACAGGTGCAAACCCGTGCGA 1896756 32 100.0 34 ................................ ATTCCAGAGGAACACAAGAACGGCGGCATACACG 1896822 32 100.0 35 ................................ GGAATTTCTGTTTCCTTTGTATCCCATTGAAACAT 1896889 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 99.8 35 GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Left flank : CTACACGGGCGTGTGAGTTGAAATTATTTGCAACTGCCATATATACATAATGGATGTTTTCGTCACGCCCTACACGGGCGTGTGAGTTGAAATACCATTCCATAACCATTTACTGCCAACTGCCAAAGTCACGCCCTACACGGGCGTGTGAGTTGAAATATCAACTGGAATTCCAAGCGATTCAGATAGTAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTGAACGTCATACTCTCCATCTTTTAGAAATCCCAGTCACTGTCGCCGGAAATGCAAAACGCAAAAAAACGACACGCAAAACGCAAAAAATAGTAAAAAAATAGGCGAATAACCACCGGGGAACTGTATTCTCAGCCCGGGTTATTCGCCTATTTCATTTATACGAATTGTAGTTTTTCGGTACTTCCGGCCGGCCAAAGCATTCCTAGCGCAGAGCAGCTGCTGCACCTCGTCGAAGTCCTCCGGCGGGATTATAACGGGCGTTTTAACGGGCCTTAAACGCCCGTTAAACACCCCATAACCACAGTACACCGGGTTGCGCAGGATCTTGCTGACAGAGTAGGCCGTGAACGGCTTGCCGCGCCGCCCGGTGAATCCGTGCGTGCCACATAGCCGTGCTACATCGGATAGACTTTGGACAATGAGGTACATGTCAAAAATGTACCTCACGGTCTCAGCGGCGATTGGATCAAGCACGAGATCGGCGCCGTCCCCGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTACACGGGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCCCACACGGGCGTGGGAGTAGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //