Array 1 32763-35001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXOX01000078.1 Methylacidiphilum fumariolicum strain Ice contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 32763 37 100.0 38 ..................................... TTCTTTTTCGGCTTTCAGTTGATGAAGCCTTCCTTTAA 32838 37 100.0 39 ..................................... CCCGTAAATCACCCCACCTTTTGTTAGCATATGAGCTCT 32914 37 100.0 37 ..................................... AATTTATCCCACTCATACTTCAGAGTAACTTCTTCTT 32988 37 100.0 40 ..................................... TGCCCATGATCTCATATGATATGTTATTGAAATAATACTT 33065 37 100.0 38 ..................................... CTTCTAATCTTGATTGCTGACCGTTTTCCCCGCTTAAG 33140 37 100.0 37 ..................................... AAGTTCAAAGTAAATCCCATCCAATTTTCGATAGATA 33214 37 100.0 37 ..................................... CAAGCCCTGAGGGTGAAGACTTTTTCCTGATAAAGTC 33288 37 100.0 40 ..................................... CTGCTATTTCACCTTCACCTTCTAACTTGAACCGCTTCTC 33365 37 100.0 42 ..................................... CAACAGCTTTTTTGTAATCGCCTTGAAGAGAATTCTCCAAGG 33444 37 100.0 42 ..................................... CCTCATCCTCAATAGGGGAAAATTTGTCCATAATTTTATGAG 33523 37 100.0 39 ..................................... CCTCATCTAAAGCTCCCCATTCACGATACATAGCGTTAA 33599 37 100.0 40 ..................................... ATGTTGTTATGATAATATTTCATGGGGATTTTGTGTTCCC 33676 37 100.0 35 ..................................... TTTCTCATCTTCTGGCCACTTCCATAAGTTTTTCC 33748 37 100.0 37 ..................................... ACCTTCTCTTCCTTTAATAGTCGAATATAAGCCATTA 33822 37 100.0 38 ..................................... TTAAATGTTTGGTACAGCAGGAGAAACTTCCTGCTGTA 33897 37 100.0 40 ..................................... AACTCATTCCAGTTTTGGAACTCTGGCTTACCCTCTGGTA 33974 37 100.0 42 ..................................... TTTCCTTTGTTACAGGGTCAAAATTCGACCACTGGCGAAGAA 34053 37 100.0 41 ..................................... AAATAAATGCCAATACATATCCTCCCCTAAGGGAAGATATG 34131 37 100.0 39 ..................................... TCGATTAATTCTTTCAACAAAGACTCCCAATTGTGGTCT 34207 37 100.0 38 ..................................... AAAACCAAATATTTCGACCTGCTATATTCCGGATACTC 34282 37 100.0 38 ..................................... AGATAAACTTCTTGGCTCTAGGGGATTGAACCCTAAAG 34357 37 100.0 39 ..................................... ATACCAGCGAGCATTTCTGGCCCGATAAGCATGACTTCT 34433 37 100.0 39 ..................................... AGACCATACACTATCACTTCCTCGTCAGAGTAGTTGACT 34509 37 100.0 40 ..................................... TTCAGGAGTGAGGTAGTATCTCTTCATATCCTCATCCCAA 34586 37 100.0 39 ..................................... AATGTCTCGAATCATCTTAATTTCCCAGTCTGTTAACAT 34662 37 100.0 39 ..................................... ACCAAGAAGCTTCAGGCAAGGGGAATACATATAAAATGT 34738 37 100.0 37 ..................................... AAAACTCAACCCCAATAGACTTCTTCAATGCTTCCTG 34812 37 100.0 38 ..................................... TACAATAAAGATAAAGGAGGTAAAAATGAGGGAAGATT 34887 37 100.0 41 ..................................... CCAGGAACTGGGGGCTCGTCACAATATTTTGGTAACTCATA 34965 37 91.9 0 ..........................ATG........ | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.7 39 GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Left flank : GGAATAAGAGTCCAGTTTAGCGTTTTCGAATGTTATCTTGAAGAATCAGAACTAGAAGAATTGTGGCAAAAGCTGCTTGCGGAAATTGATCCTAAAGAAGACAGGATTGTCGCCTATAAAATAGATGCTAGACTAGCAAAGGAGATTAGAACTGCTGGAACAATGGTGTGTTCTGAAAAAGTAATCTGCTTTTTGGTATAAACTCTATTGCAAATTGGAAGAAATTTTTATATTTACCTAGCTTGTATCTTCTACTTGCATAAAGAATGACGGTAGTTTTTTTGTGTTTAAAAATGCAAAAATGGTTTTTTAGGTATTAACACCAAACCACTAAAAAATAGCCATGCCAATACCTAAAGTTATATTATTGAATATAAATGACTTATTAAACTTTCTGTGTTTTTGGGCTAATATAAAGCATAAACTGTACCAACATAAAATTGGAATCAATGCCTATGAGGTTTTTTATTTTTTGATAATCAAGATGTTAGAAGACCGCA # Right flank : CTTTCTCTGCGAACTGGCATTCCGCTTCCTGGCAAATTTGGGGATTATAGGCATGGACGACTCCTTTCCGGCCTCTTCTTGCTGGTTATCCTGCCTTAATCTCGATGCTGCGGATCTTGATTAGGAAGATTTCTGGCCCTACCCAGACATCCTCGACCAGCATATTGCTCGCATGTCTCCGGTTTCGCTTTGTAATCCAGCCGTGATAGACGGGATCTGGCCCCAATGTCGAACGCTCGAGTACAGCCAGAGGTAGCTTTCGAGCTTTTGAGATCCCCGGAAGCTCCCGCTCTCCCAATGGGTGTGAGAAGGGAGAAGACGAGGACCATCATCCGTCAACAAGACATGCAGCTACAACCAGGTTCTCTCCTTATGACGCATAGGTCGGCAGCAGGACAAGCGGGAATGAGGTGTGCTTGCTTGATCGATTGAATGGTGCTCTTCAATCGCGATCGCTGACGAACGATCTGTTTGCGGCTATTTCCCTGTCTGTGCAGGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 19614-19935 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXOX01000052.1 Methylacidiphilum fumariolicum strain Ice contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 19614 35 100.0 37 ................................... CTCCTGTCATTGAATTTTATGGTTATCAGTTCTAATC 19686 35 100.0 37 ................................... CTTGCCATGACTGACTTCCATGCCAGGCCTAAAATCA 19758 35 100.0 36 ................................... GTTTTCTGCCATGCTGGAAGGAATACCACCTGGATG 19829 35 100.0 36 ................................... GATTGGCCAATGTGTGGCCAGGAAGGAGGAAAGATG 19900 35 91.4 0 ............................A..G..C | G [19931] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 98.3 37 GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Left flank : GAACCGTTACGCCGGTTGTTTTTCCGGGGCATTGGCAGCGGCGAGGTCGAAATAGGGAAGGTCGTTTACACACAATGTTGGCGGCGATGTTATCTGAGGCAGGCATTGAGGAGAATAGCGTAGAGCAATGCCAGGTGCGGCGAGAGCCATTTTTCAAGGGTTGCGAGTTGGCCCAACAAGCCAAGGCTCCACAACATCTTCTCGCTTTACCGCGAATGCATTTGGAATTAGTTTTAAAAGAAGAGGTTCAGGGGCCTATGCTCCTTGGCTTGGGACGCTTTGCTGGACTAGGTTGTTTGGCTGGTGTTAATGTTCTTTGAGAACCGTTGGGTTTGCGAGCGCTTCGATGCTCATCGAGGGTAGCAGTCGTGCTCGAACATTGCGTGACAATGAGTTGTGAAAAATTATATGTGGTTATGGCAGAAGCGATATGTAGGTGGTGACACACGCTCGCAAATGTGCAAATTGTGTGTTGAGTATCAATTGGTTGCAAGGCGGCA # Right flank : CTCATGATGACTTGTGAGCCGGTTGGTAATAGCCGGCTCATTTGTTTTGTCAGCTTTTCAAAAGCTCACCCTAGAGAAATTTTTACAGGCCCACCATATTTGGAAAAAGGAAAAAAATAGAGCACTAAGCGCCAGGATGCTCTATAACTCGATTCTTTAACCTGCTAGCTATTGATGATGACACTCGCCAAGTCGTATAATTCGATTTTAACGAATCTTCCAGATATCATGAGTCTAGTCACACCACGTTCGCAACATCTTCTAGCTTTACCGTGAATGCATTTGGAATTAGTTTTAAAAGGAGATGTTCGGTGGCCCATACTTCTTCGCTTGGGACACTTTGTTGGACTAGGTTGTATGCCACCCTTGGTCCAGGATCGATTTGTTCATCCGGCTCTTCGCCTGCCCTTTCTTTCCTGGATTTTCTCTCTTCTACTTGGCTGACCGGGTTATGTTTTTGATCGGCAAATCCTCTATAAGCCCCACCGCGTGGGCTTTGC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //