Array 1 119237-112847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLT01000010.1 Stenotrophomonas sp. Leaf70 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119236 28 100.0 32 ............................ TGCACCGCAGCACAGGGATAGTGTATTCGAAG 119176 28 100.0 32 ............................ TGACGCAGAGCTTGGCAATGTGACATTCAACG 119116 28 100.0 32 ............................ ATTGGGAAGTGGACGGCACGTCAGGTTCTACA 119056 28 100.0 33 ............................ TTGGCAAGAAGTCTGAAATTGACCAGTAACGAA 118995 28 100.0 32 ............................ AACAGCCACGGCGCGGGGGTGGATCATGGGTA 118935 28 100.0 32 ............................ TGTTACGAAGCGCTGGTGGCGCTCGACATCGC 118875 28 100.0 32 ............................ AGACGAGCCCGCCCGGATGTCCACCTGCACCA 118815 28 100.0 33 ............................ CTGTTGGAGTTCGGTGGCCTGAACACCATCCGC 118754 28 100.0 32 ............................ TGGCCGTAGCGGCATTTCATCGTCCAGCCAGA 118694 28 100.0 32 ............................ GACGCCGCGGTGGCGCACATCATCCGGTGGGA 118634 28 100.0 32 ............................ TCGTGAAAGTGCGCGATTACTACGTGCAGCAG 118574 28 100.0 32 ............................ AACGTGCTGGCCAAGCAGCTGCGCAGGGCCGG 118514 28 100.0 32 ............................ CTGCTGGGCACGGCCCCCACGTCGGACGACGA 118454 28 100.0 32 ............................ TGCTGACGGATTGCCTCAAGCAGCTGCACGTC 118394 28 100.0 32 ............................ AATCAAGTACCTCCGCTCGCGGCTGCCGACCA 118334 28 100.0 32 ............................ GGAATGCGTCAACGCAGGTGCTGCCGCTTTTT 118274 28 100.0 32 ............................ GCTGGGGAAGGTGAGGTTGTGGTACGGGCACT 118214 28 100.0 32 ............................ ATCAACGGCGTTAAGCGCGATTGCCGCGAACT 118154 28 100.0 32 ............................ ACCAGCACCGGGCCAAGTTCGCGGCCATTCCC 118094 28 100.0 32 ............................ GACCCGGGCGTGGCGGTGTACTGGGTGGACCA 118034 28 100.0 32 ............................ TGGCGCCAAGCTGGGGCCTCCGAAGTGGATGC 117974 28 100.0 32 ............................ ACACGCTCCAACGCGGCAAGCCGTCCGTCGCG 117914 28 100.0 32 ............................ ATTGAGCAACCAGCGAACTGTGTACGTCGTGC 117854 28 100.0 32 ............................ TGCTTGAACTGATTCAGCGCAGCGCGGAGACG 117794 28 100.0 32 ............................ TACGTCGACCAGGACGGCAACCACTTCATCGG 117734 28 100.0 32 ............................ AAGACCGCCGAGAACGAGAAGCGCATCGCCGG 117674 28 100.0 32 ............................ ACCATTTCGCGCAGCTTCTGCAACTGCTGCAC 117614 28 100.0 32 ............................ TGGCGATGCCGTCCGTGTGCTTGTGCATGGCC 117554 28 100.0 32 ............................ AAGTGGGATCGATAGACCAGTCGATAGGTAGC 117494 28 100.0 32 ............................ TTGTCAACACGGCGGAAGGCATCGCCGACTCC 117434 28 100.0 32 ............................ TGGGCGCGGAGCCCTCAGTCGAAGGCCACTTC 117374 28 100.0 32 ............................ TTCTGCGCATCGATAGTGTTGCGGATGATTGT 117314 28 100.0 32 ............................ TGCTGGTCGACGCCTGGGCACGCACCGAGAGC 117254 28 100.0 32 ............................ ATCGGCTTGCCCGTTGACGACTTGCAGGGACG 117194 28 100.0 32 ............................ CATCGGCAGCTCGGCGTAGGTGCCCATCATCC 117134 28 100.0 32 ............................ TCGTAGCGCATCCGGGTGGCGTTCGTGACCTT 117074 28 100.0 32 ............................ TCACCGAAGTCGGGGCGAATGGTCAGCACGGG 117014 28 100.0 32 ............................ TGTCGCGGCCGGTGTTGTTGTGCTTCTTCGCG 116954 28 100.0 32 ............................ ACGCTGGCCGGACTCACCGGCATACCGCTGGT 116894 28 100.0 32 ............................ ATGATGCCAGCGGCACCTACAACGGCCTGCTT 116834 28 100.0 33 ............................ CTCGAGGATCGGCTGCTCGTACTCCGGAACCGT 116773 28 100.0 32 ............................ TGCGGTGGGACGAGCGCCTGAAGGCTCTGCTC 116713 28 100.0 32 ............................ GTGCCGGGCACGCCGGCGATGCGGTTGAAGTC 116653 28 100.0 32 ............................ GGCCTGATGGCCGAGAGCAAGAGCCGCACCGA 116593 28 100.0 32 ............................ ACGGTGTGGATCGCTTTCGCACGCCACACGCC 116533 28 100.0 33 ............................ CGCATGGGAGTGGGGGAACAACCACCACCCGCG 116472 28 100.0 33 ............................ CTGGCCGGGCGAAGCGTGCGGAAATGTCGTGGA 116411 28 100.0 32 ............................ TGGGCGTGCATGGGTGGGAGGGCACAACCGGC 116351 28 100.0 32 ............................ TACAGAGCTACCAGGCATTCATCGCGGACCTG 116291 28 100.0 32 ............................ CGTATCGGCTATGCCCGTGACAGCCTGGATGA 116231 28 100.0 32 ............................ ATTGACATCGTGGCCGGCGCGGTCGTGCTCGG 116171 28 100.0 32 ............................ ACGCAGGGCATCCCGTGCACGTGCCAGCGCTT 116111 28 100.0 32 ............................ CTTCGGAAAGCACACCGAGGCCTGGCTGCAGC 116051 28 100.0 32 ............................ TCGATCAGTTCGGGCTCGGCCGCACCCCGCGC 115991 28 100.0 32 ............................ TTGACCGCGCCGGCGCCGGGCGTCAGCTTGGC 115931 28 100.0 32 ............................ GACATGGTTTGCCTGATGGGCGACCGGCAGGC 115871 28 100.0 32 ............................ ATCGACCACCACCACGCCACCCTTGACCGGCA 115811 28 100.0 32 ............................ TGCCTGGCGCCGAGCTGCGAAAGGACCTGACT 115751 28 100.0 32 ............................ AAGAGCCGTGCACCGGGAAGCCATCTAGCACT 115691 28 100.0 32 ............................ GAAATGCAGGCGAAGGCCGGTGACGTGGCCCG 115631 28 100.0 32 ............................ AATGCAATCGCAGCGCTGAGGCGCGCTCTCGT 115571 28 100.0 32 ............................ ATCACGGCCCGGCGAAGCATGCCAACGAGTAC 115511 28 100.0 32 ............................ TCGAACAGCTTGGAGTTGCGCGCCTTGATGCC 115451 28 100.0 32 ............................ ACCCCGAACTGGTCGAGTTCTTCGCCGACCCG 115391 28 100.0 32 ............................ AGGCTGTTGAGCGGGGCATCGTAGCCGTGGCC 115331 28 100.0 32 ............................ ATAGGAATAATTGCTGCATGAACCCTGCAACC 115271 28 100.0 32 ............................ CTCCCCGCCCTCGGTGGCCGGTGCACCAGCAC 115211 28 100.0 32 ............................ GTACAGGGCACGAACATCGTGGCCCTGAAGAA 115151 28 100.0 32 ............................ TCGACATCAGCTACATGGGCCTGCTGGACCTG 115091 28 100.0 32 ............................ GTTCACGCCAATTCGGCACTTGCGGGCCTCAT 115031 28 100.0 32 ............................ GCCCCCAACTTTGTCACGCTCCGCTCGGTTGA 114971 28 100.0 32 ............................ TCCCTGACCCCGTTGTATGCGCGACTATTGCC 114911 28 96.4 32 ...............A............ ATCCGCCGCGACGGCACCTATACCGCCCGCCT 114851 28 100.0 32 ............................ AATGTGGCCTCGATGACGTTGGCGACCACGCT 114791 28 100.0 32 ............................ AGCGGTAGCGCGGCGCGACACGACGACGACGC 114731 28 100.0 32 ............................ AGGCCGAGCGCGCCGCACGCAGGGCCTCGGCA 114671 28 100.0 32 ............................ ATAGTCCTTCAGGGACTGGGTCCACTGGTCGG 114611 28 100.0 32 ............................ ACGGGACAGCACCTTGCGCGACCAGCGCACGA 114551 28 100.0 32 ............................ GCCTCCATGCTTCCCGGCGGCGTTCCGCTTGA 114491 28 100.0 32 ............................ ATTTCGGCGTTGCGCATCAGCGAGCGCTTCGT 114431 28 100.0 32 ............................ GGAAGCGCTGCCGCCCAGCTGCTCGATCTGGT 114371 28 100.0 29 ............................ AGCGCCGCCGCCGCGCAGCCTTCCCAGCC 114314 28 100.0 32 ............................ AACCTCATCGGCCCACTGCTTGAAGGTGGAGC 114254 28 96.4 32 .......A.................... TCTGCGCCCTCTGGGCCATTCCGCTCACCCTG 114194 28 100.0 32 ............................ AATCCAGTTCCGCCATTTGCCCAGTCCTCCAA 114134 28 100.0 32 ............................ AGTCGAGCCCATGCCGGCGAAAGAACGCCTTC 114074 28 100.0 32 ............................ CCGGACGAGAAGCCGGCGCTCAAGCAAGCCCT 114014 28 100.0 32 ............................ CTTGGACATGTTGGTCGATCCCGCGCCGTACC 113954 28 96.4 32 ...........C................ TGTTGCACTGACCTCGAACTCGCCGCCTGCAG 113894 28 100.0 32 ............................ ATGGCGAAAGGGGAATTCCAATTCATGCCCTA 113834 28 100.0 32 ............................ CGACCGCCCTGACCCTCCAGGGCGCGAATGAA 113774 28 100.0 32 ............................ ACTTCGGAACCCGCGCCGGGTAGCGTCACCGC 113714 28 96.4 32 ......................T..... ATCGTCTCCGTTGAGATTGAATTCCTAGTCAA 113654 28 100.0 32 ............................ TTGACCGGGCGCAGGCGCAGGGCCTTGCTGTT 113594 28 100.0 32 ............................ TTGCGGGAATCTCGCTTTGGTCCGTTGCCGAC 113534 28 96.4 32 ....A....................... TTGGGCACAACGGCCTCACCCCGCAGGCCCAA 113474 28 100.0 32 ............................ CCAAGCGCCGGGAGTTCATCACCTCGGGCGAT 113414 28 100.0 32 ............................ TGCGGCAACCGGAGCAGAAAGCATCTGCTGGT 113354 28 100.0 32 ............................ ACACCATCACCGGCAGCACCGGCTTCTCCACG 113294 28 100.0 32 ............................ TGCTAGCCAAGCTGGGCGCCGCCGCGTCGCCG 113234 28 96.4 32 .........T.................. AACGCCAGGGCCACGCGCCAGAGGCACAGGGA 113174 28 100.0 32 ............................ ATGATCCTGCTGGTTCTATGGGGGCTGTACTG 113114 28 96.4 32 ..............G............. ATGTCGAGGCTGATGGGCTGGTACATGCCACG 113054 28 96.4 32 ..........................G. ATGTAGGCGGCGAGGAGGTCCAGCGCTTCGTT 112994 28 100.0 32 ............................ AGCGCCGACACCGTGCACATCCAGATCAACCT 112934 28 92.9 32 ..........................GC ATGTTCGATGCATGGAAAACACCACCCCGCGC 112874 28 75.0 0 .....T.......C.AC...AC.....G | ========== ====== ====== ====== ============================ ================================= ================== 107 28 99.4 32 GTTCGCTGCCGAGTAGGCAGCTCAGAAA # Left flank : GACCCTGCTCCGCCTCCTGCAGGAAGATTGGCTCAAGGGTCTGCGCGACCACGTACGCCTCACCGGGATCAATCCGGTCCCGGAGGGGGTGCCGCAACGCACCGTGCACCGCCGGCAGTTCAAAACCAACGTCGAACGCCTGCGGCGCCGCCGTATGCGACGCCAAGGGGAGACCGAACAGCAAGCGCAACAAGCCATCCCCCAGACCGTGGAGCGCCGCCCCAACCTGCCCTATCTGCACCTGCGCAGCCGCAGCACCGGGCAGCCCTTCTGTCTGTTCGTCGCCCTGGGTCCGTTGGCGGCTACCCCCACACCGGGAAAGTTCAACAGCCACGGATTGAGCAGCACCAGTACCGTCCCGTGGTTCTGACCCAATTTCCAGGGAGTCAGTAACGCTCTTTGAAAATCAGTGGCTTGCGAATGCCCCCGGAATTTTGGGGGCATTCCTTTATTCATGGATTTCCTTAGCATTACCAATGACTTGACGTGAAATTCGTCTA # Right flank : CCTTCGACGGAATCCAGCTAGGCTAGCAGGCTTTCTGTTCTTTCCGCTCGGCAACCACTTCACTTCCGACAATCCACCCGATGTAGGAGAACGCAGGGCATACGCCTATCATCCAAAGCCAGACGACCAGCCTTGGACTTTTTCCGTGCCCCCCCTCCGCTCCTTCCTAGACAAATCCCCCACCCTGGGCCAGCGCGTCTACATCGACCCCGCCTGCACCATCATCGGCGACGTGGTGCTGGGCGATGACGTGTCGGTGTGGCCGGGCACGGTGATCCGGGGCGATGTGAACCATGTGCGCATCGGGGCGCGCACCAATGTGCAGGACGGCACCATCATCCATGTCAGCCACGAGAGCCCGTACAACAAGGGCGGCTATCCCACGCTGATCGGCGAGGGCGTGACCGTGGGACATGGCTGCATCATCCATGCGTGCAGCATCGGCGATTACTGCCTGATCGGCATGGGCGCGTGCGTGCTCGATGGCGCGGTGATCGAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //