Array 1 1356-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBT01000008.1 Escherichia coli strain 10-A140-A entry8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1355 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1294 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1233 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1172 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1111 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1050 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 989 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 928 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 867 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 806 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 745 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 684 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 622 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 561 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 500 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 439 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 378 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 317 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 256 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 196343-193569 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIBT01000022.1 Escherichia coli strain 10-A140-A entry22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196342 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 196281 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 196220 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 196159 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 196098 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 196037 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 195976 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 195915 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 195854 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 195793 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 195732 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 195671 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 195610 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 195549 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 195488 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 195427 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 195366 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 195305 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 195244 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 195183 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 195122 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 195061 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 195000 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 194939 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 194878 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 194817 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 194756 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 194695 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 194634 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 194573 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 194512 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 194451 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 194390 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 194329 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 194268 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 194207 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 194146 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 194085 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 194024 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 193963 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 193902 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 193841 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 193780 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 193719 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 193658 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 193597 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //