Array 1 19600-19083 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQD01000022.1 Bifidobacterium longum subsp. longum strain MCC10022 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19599 29 100.0 32 ............................. GCTGGAGGCTTTGCGGTGATCTGGCCTCGTCG 19538 29 100.0 32 ............................. ATGACTTCCTTGACGTTCTGCGCGCCCTTCTT 19477 29 100.0 32 ............................. TACCTGCATACCTTCCGTTCAGCGTCCCAGAA 19416 29 100.0 32 ............................. GTGAGTGTCTTCGTCCGGCAGCGTCCCTCCGC 19355 29 96.6 32 ............................C TTGGAAGCGGGTGCGTGATGGCCGGCAGTCAA 19294 29 100.0 32 ............................. GAGAGGATCAAGAGAAATCAGCTGGGGATATG 19233 29 100.0 32 ............................. AATAAATACAAGATTAAAACCGAGAAATTGGT 19172 29 100.0 32 ............................. AACACCCAGCAGGTCGAGGATGAAGATCGGAA 19111 29 89.7 0 ..........T..G..............A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 ATCTACCCCGCACACGCGGGGATAAACCG # Left flank : CAGCGACCTCGCAGCCCTCCGATTCGGCGTGCAACCAGTCCACACGGGCCCACGCCTGACGGACTTCCAAACCATGGGCAAACGAGCTGACGGCAAACCCAACCCTTTGGAAACGAAGGAATACCTACAGGATTCCACATTCACCGTCGGATTGGAATCCACGGATCTGCGACTCCTCATCAGAATCTGCGCCGCTATCCAACACCCCGTATACATGCCATACCTAGGACGACGCGCCTGCCCGCCAGCCGGCCCGATCCGAGTCGGACTGGTAGACAAGCCGTTGGAACAGGCGTTCAAAGGCAAGGAACAGGCGCACGTCGAAACCATCGATGGCACGGAAGCACACTGGGATCAACCGGCCAACAACCGAGTATTCCAGGCACGCTACTCCAACGCCATCGACCCGTTATTCAATGCGGTAGCCGAAGCGCAGAATGACTGAGCGAATCAAATATTTCCGCACTCATGCAGTCACGAAATCCTTTGAGAATGCAAGT # Right flank : AAGTCAAGCGAAATGCGAAACACGGCGTGTCACTTACCCCGCGCATGCGGGGGGTGGTTTCTTAAAATGTCTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAACCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCAACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 22413-22134 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQD01000022.1 Bifidobacterium longum subsp. longum strain MCC10022 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 22412 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 22351 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 22290 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 22223 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 22161 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 5 28 95.7 35 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAGGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //