Array 1 3377-110 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIHO01000031.1 [Ruminococcus] gnavus strain RJX1120 RJX1120_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3376 32 100.0 36 ................................ CTGTCGTGCATCCTGTCGTGCTGTGCAGCGGACATG 3308 32 100.0 34 ................................ TGTTGATCTCCTGCTGCAGCATCTTAATGAGCGG 3242 32 100.0 33 ................................ TACCTTAATAGCTACATCTGTGATGCGCTTGCC 3177 32 100.0 35 ................................ GCCATTGTCCAGATGATGTCATAAAACACCTCCAT 3110 32 100.0 34 ................................ TTCATAAGCCCCAGGCCATAACTCTGTTTCGGAA 3044 32 100.0 35 ................................ CACACGCTGGGCATTTAACGATCCCAGATAGCCAG 2977 32 100.0 34 ................................ TTCCAACTGCAAGTCTTTCTGATCTGTGTATACC 2911 32 100.0 34 ................................ AGGAGCTAACAGAGTATCAGAATCACATGATGAT 2845 32 100.0 33 ................................ AAAACAACGGATGTTGCACTGGAAGCGAAAGCG 2780 32 100.0 34 ................................ TTCACAAATACAATATATCTACCTTGCGTAATCA 2714 32 100.0 34 ................................ ATAGACACAAACAATATCAAGTCCTTTGAGATTT 2648 32 100.0 33 ................................ CTCAAAATCAGACTTGACACCTAACTGCTTTGC 2583 32 100.0 34 ................................ AAGTTCCGGCTGCCAAGAGGGATGATCCTGACAA 2517 32 100.0 34 ................................ TTGGATGCCGTTGTATCAAGGTCCTCAATATCCC 2451 32 100.0 34 ................................ TCTCTCTGAAAAACGGGGAGATCGATCCAATCCG 2385 32 100.0 34 ................................ AAAAATCAATGTTGCTTCCGCTGTCGGTTGTCTG 2319 32 100.0 35 ................................ TTTTTGGAGATCCACGATACAGGAGATTTACCTAA 2252 32 100.0 33 ................................ GGAAGAAGCAAAGAAAGAATGAAGTATTGTGAG 2187 32 100.0 34 ................................ TTGCAAGTCCGACATTTTACGTAGATACCGTGGC 2121 32 100.0 34 ................................ CCTCATAAGCTGTCGGCTGGAAATCCAGCGTCTT 2055 32 100.0 34 ................................ CCTTACGGATGGCGGCTATTCCTGCCTTTGCATC 1989 32 100.0 33 ................................ ATAATACTCGGTGCTGCAACACCTGTATTTACA 1924 32 100.0 35 ................................ CAAAACGTCCCTGATGGAGTTGACGAAGAACTTCC 1857 32 100.0 34 ................................ CTCCGTTATGCCACTTCATACCTTGTCCGTGCAT 1791 32 100.0 33 ................................ AACTGGCAACTGGAATCTCATATACATTTGGAG 1726 32 100.0 34 ................................ ATGAACGCAGTCGGAGCAACAGGAGGCAGTGCCG 1660 32 100.0 33 ................................ TACCCCCATATATAAGAGACCAGTCGGCATAAG 1595 32 100.0 34 ................................ CATTTGGATTTTGGAATCAATCGGCGCTCTTGCA 1529 32 100.0 34 ................................ CTCTTTTTAGGGTGTCCGAAATGTCCGAATACTT 1463 32 100.0 35 ................................ AACTGGTTTGTCAAAAGTATTCGTTGTTGCTAGAT 1396 32 100.0 36 ................................ GGAATATCCCTCTTTGCATCTACACTGTGGCTCACA 1328 32 100.0 34 ................................ TTGGATTATGGAAAAGAGCTGACGGGTCGATCTA 1262 32 100.0 35 ................................ CGGCCGAAATATCACGTATTTTGCGCATGCCCGGA 1195 32 100.0 34 ................................ GTGTTTAAGATCAAACATAAGTCTCTGGTAGTAT 1129 32 100.0 34 ................................ TTTTTCATCTTTTGCCATTATCCTACGTGATTTT 1063 32 100.0 33 ................................ ATCGTTGCATCTGCCAACGGTTTTGGCCTATCA 998 32 100.0 33 ................................ ACGGTACCGGAATCGTAAGAGATAGATTTTGTA 933 32 100.0 34 ................................ TCTGGATTTTGGTAAGACGTTCCATGATCGTCTT 867 32 100.0 34 ................................ TCTGATTTGTTGCTCTTTTTCCAAAAGGCGGCAA 801 32 100.0 34 ................................ CTGAAAAAGGTGGGAATAGATACGAAAAGGAGTG 735 32 100.0 33 ................................ CATCGGAAGGATGCAGAAAACACCGATTATTTC 670 32 100.0 34 ................................ TGGTAGCCGTATTTTGCGGCATAATCCGCTGGAG 604 32 100.0 33 ................................ GAATCCGTAGAGGACTTCCGACAAGCCTACGAT 539 32 100.0 34 ................................ CCCAGACCCCCAGACTCCAATAAAGGTACTGATC 473 32 100.0 35 ................................ CATCCATTGGTTGGAGTTGATGGAGTACCGTATGA 406 32 100.0 34 ................................ CGTAAATCAAACAGTGAATTGGCGGCTTTAACTC 340 32 100.0 33 ................................ GTATCTACTCCCCATTTTCTTAAGCAGTCTTCC 275 32 100.0 35 ................................ TGGACTTATAAGTTGTATACCCGTAATCTTCCCCT 208 32 100.0 35 ................................ TCTTAAATATGCTCGTCTTAATAAACATGATGCTC 141 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 50 32 100.0 34 GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Left flank : ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT # Right flank : TAATAGAACTTCGTATGTCTTCGGAAAATGGTTCTAGTATAACGAATATTAAATAATTGCTATATTAAATTGATACTGCTTCCTCTTCACTGATTTCATCCATTTTATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //