Array 1 58248-57436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000002.1 Akkermansia muciniphila strain Akk1826d contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 58247 31 100.0 34 ............................... TATTACGACAAATCCCAGGTCTATACACGACAGG 58182 31 100.0 34 ............................... CCATACCGGAAATAGTACCGTCCATGTGACGGCG 58117 31 100.0 34 ............................... TGCTCTGAAAAACGGTAAGGGCGCCAGACTGCCG 58052 31 100.0 34 ............................... ATGACTGCGTGCCTGGACATCAACCCGTCTTGGG 57987 31 100.0 34 ............................... GGTGCGCTCCTCTGTCTCACGCCCCACTCCTTAA 57922 31 100.0 34 ............................... CCGGCGCACAGTTCGGCGCGATCCAGCGGGAGAC 57857 31 100.0 34 ............................... TTGCACAGCGCAGAGATGCAGCGCTTGCTCCCCT 57792 31 100.0 34 ............................... ATTGCCACGGTCATTGACCGCATCGGGACGGGCA 57727 31 100.0 33 ............................... AAGGGAGGCAGCGGCGTGGCGCATGTGCTGCGC 57663 31 100.0 36 ............................... GATTGAGGCGGCAGAAGGAATTCCCCCCGCCATCTG 57596 31 100.0 34 ............................... TGTGATTATCAAACAAAAACCGTTGAAACCTACA 57531 30 80.6 34 .....C....T...A....A.....-...G. CCGAATGACTTTTAGTCTTTCATCTTTAGTATTT 57467 31 83.9 0 ........T...........AC...A...T. | T [57445] ========== ====== ====== ====== =============================== ==================================== ================== 13 31 97.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCTTTTTTCTCCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGAAGGTCCCATGAAATCATGGAAGGAGGCCTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGAACGGAATACTATGGCCTCTGCATCGCAGCAGGCGAGGGTTGTCGGGACGGCTGGAACGACTTCGTGGCGGAACCTTCCTCCGTCCTTCTCACTCACCGCGCCAACCCCCGGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCGTGGAATACGCATCTCCGCGGACAGGTTGGCGCAAAATACCCTTTGCGTGCCTGACTCTCAATATGTATATATCCCCGCC # Right flank : CATCATGAACGCATGTTCCGATGTTTTCTTATGATGATTCCTTTTGGCTGAAAGGCTTTTCCATGACGTTCAGGCCATGAAAAAGCGCCGGTTCCCACAGGGAGGGGACCGGCGCTTGCGGTATAAGGGGGGAGGGGTTAATGGGCGCAGCCGGCGCAGGCCCAGCCTTCGCGGATTTTGGCGAAGAAGTCGTTGCCCTTGTCATCCACCAGGATGAAGGCAGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCCACCTTTTTGATGTTGTTCTTGGCAAGAATGGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGCTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTCTCCTGGAACAGGTCCACGTAGGAATCCATGCGGCCCGCGGTGGTCGGCCCGAAGGAGCCGGAGGGATAGCC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 182602-182047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000002.1 Akkermansia muciniphila strain Akk1826d contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 182601 31 100.0 35 ............................... CGGATTGTGCGGGTGCGCGATTGGGCCGCAGATGT 182535 31 100.0 34 ............................... AACGTCCAGCCATATCTCGCCGGCCGTAAAGCCG 182470 31 100.0 35 ............................... CGGGATGCGGTCCAGATACCTGCTCAGGTCAGCGT 182404 31 100.0 36 ............................... AAATCCAAAAGAATCATATCAATCCCTTATCAATAA 182337 31 100.0 35 ............................... TATGATCTCCTTAAGAGAGTTTTTGCCTGGCATCT 182271 31 100.0 33 ............................... CCCTCACGGGTCCGCTCACGTGCAGGCAACTGT 182207 31 100.0 34 ............................... TCCGGCCGACGCCTGTTGCCTCCGCTACGTCGTA 182142 31 100.0 34 ............................... CGCGTTACATAGGAGGTCGTCTCGCGGGAAAATA 182077 31 74.2 0 ...T...................TCAT.CGG | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 97.1 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TTTCACAAAAGATGAAACGGCCTATTTCTCTCCACCGCACTCTTGCCGCCACGGCGCTGGCGGCCTTTTTCCTTGCAGGTTCCCTCCAGGCCCAGGAGCCGGCCGGGATGGAAAAGGAACCCTCCGGGACGGAAGAGTCCGGCATTTCCACACCACGCCGGGTTGCCGGGCTGGGCGTGCTCGCCTTCCTGATCGGCTGGATGGTCTGGCGGAACGGTTCCCGCCGCCACCGGGACGCCGGACAGGATACGGAGACCGGCAATGATGACACCGGCCCCAAAGAATGACGCCGTTTCTGAAAGAATGGTTCCATGCCGCCCGTAGTCGTTGCAGAGAGCATCCCCTCCACCCGACACTGCATGAATGTTTTTCTTACCGTTCTGAGCCTTCTTTTCTGCACAGCCCTGGCAGGAACAGCCGCAGACTCCCCCGCGGAGGAGTTTCCCTCCGGCGTGGTTCAGGAGCTGTGGTTCGGCATTCCGGGAGGTTCGGTATCTGGA # Right flank : ATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGGAGAATGAATAAGCAACAGTTATGCTTCAATATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATTCAAGGCCGGTCAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGTCATTCCACAGGTATTCCTGATATTTTATCAGGCTTCCTGCCTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAATCCTCGTTGC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 124005-123649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000001.1 Akkermansia muciniphila strain Akk1826d contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 124004 31 100.0 35 ............................... CCGGTCCAGGTCATCCATATCTCCGGGGCCAGGTG 123938 31 100.0 33 ............................... TCCGGGCGTCAATTAGAGACACCCAAAAATTGT 123874 31 100.0 33 ............................... CAGGCATGAGCGGTCCACAATCACTCTCTGCCG 123810 31 100.0 33 ............................... TTCTAGATAGGGGGAACTAAGAGTCAAAAATGA 123746 31 100.0 36 ............................... CGTCACGTATTCGGTACGTGCGTCAATGAGGGATTC 123679 31 90.3 0 ..............A...T........C... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 98.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGGGCCGCCCTTGAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTAAGTCATTGAGGCTCGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAGGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTGGGACCTCTGACTTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGGAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCTGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTACCAGAAGGGAAATGGCGTTTCCAGGGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGGTTGGCTGTGCAGAAAGATGACGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAACAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2191840-2191338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000001.1 Akkermansia muciniphila strain Akk1826d contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2191839 33 100.0 34 ................................. ATAATCCGGAGGACGTGGCGGCCCTCCTGGATGC 2191772 33 100.0 33 ................................. CCGGACACCTTGGCATCACCGTACACCTTGGCA 2191706 33 100.0 35 ................................. TGTCGGACATGAGCGAGAAGACCCGCGAGAAGTTC 2191638 33 100.0 34 ................................. GAGGACCCGGACGCTACCTGGAGAGCCGTGTTGC 2191571 33 100.0 34 ................................. GTGGAGATTGCGAAGAATGGAGGGGTGTTGCTGG 2191504 33 100.0 34 ................................. AGCAGGAAGGAGAAGCGTTTGTTTGACGCCTGGG 2191437 33 100.0 34 ................................. TGAGGCTGACGGGTACAGGGCTGCCGACACGACG 2191370 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCAGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCTCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCACTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CATCCACGGAAAATGGTTTACCCAAAAGCTGTTGGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATAGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATGCCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCACATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCACGCATTTCCACGCTCCACAACCCGTACCCTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2489771-2490319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000001.1 Akkermansia muciniphila strain Akk1826d contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2489771 31 100.0 35 ............................... TCCAACACTCCCAGGAAAGCACGAGCCTCACAGAG 2489837 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 2489901 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 2489966 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 2490030 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 2490094 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 2490160 31 100.0 33 ............................... TTCCGCAATGCCGCCCTGCGCCGCAGGAGCGGG 2490224 31 100.0 34 ............................... ATCGGGGCGACCAACGAGCCCAAGCCCCTGAGCG 2490289 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 9 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTAGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAATCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTACTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : CAATGCTGGATGGAAAGGTCCGGTCTCTATTGTAACGCGCCATGACATCTGATCAATTGACGACAGGTATCTGATCAATTTAGCCGTCCCTGCCTACTCCGGGCAGGGGGTGTGCAGGGCTCCTGCATCGCCTCTGCAAGCGGCCATCAGGCCGCCCCAATCCACCGCCTCGTCATCCTCCCTGGTCACACCGTCCTGCAGCATGGCCGCCCTGGCGTCGGCCAGCAGGTGCATCACCCTGGCCCGCTCGCTGGCCGGCTGGTGATCCTGGCGAGGGCTGCCGGTGGTTACCATTGCAAACCTGGCCGCATAACTCTCGGCGCTCGCTGTCCGGCTGGGCCAGCACCAGGCCGTCCACTCGCTCCAGGGGCTGCGCTGCCTCCACGGCTCCTCGATGCGGCACACTGTTGCCGGCACCCTGGCCAGCACCTCACGGCCGATGGTCACATCCTCCGGCGCTAAATCATCCAGCAGCGTCCAATCCATCTCCCGGTAGAGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2737717-2737480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOF010000001.1 Akkermansia muciniphila strain Akk1826d contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2737716 33 100.0 34 ................................. CACTCTATTTTGGATGCGGGAAGTAGCTTGTGAG 2737649 33 100.0 34 ................................. CATCCGTAGGAATCGCCGTCGGAGTAATGTCCGT 2737582 33 100.0 34 ................................. CCACTGATTACCAGCACATGCGCCCGCCTATCAA 2737515 32 87.9 0 ......................-......T.CG | C,TC,C [2737484,2737487,2737492] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCAAAGCCTCACTTGCATGATTGATTAACAACATGTACCGTTGAGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGCAGGAGTCAGAGAATGGGACGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCTAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCTGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTTTCTCTGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGTTTCCGTGATGGTGCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //