Array 1 1228382-1224580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034260.1 Candidatus Desulforudis audaxviator strain BYF chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1228381 37 100.0 37 ..................................... TTTCTTCGGCGTCCGCGACCAGCCGGCCAGCGTCGAA 1228307 37 100.0 37 ..................................... TTCTCCCCCTTTCTTACCCTCCCCGCAATCCCCGGCT 1228233 37 100.0 35 ..................................... GACGTGTGGTCAACCCATCCCCGCAGAGCAGCTTG 1228161 37 100.0 39 ..................................... ATGAGAAGGGCGGCCAGGTTTTCGAGGCCGCCCTGGACG 1228085 37 100.0 35 ..................................... CTTGTGTATCGCGGCGAGCGTTGCAAACCAGGTGA 1228013 37 100.0 37 ..................................... GCCAGCACCTGCAAGTAAGGCCGGCGATTGCCGGCGC 1227939 37 100.0 39 ..................................... GGCCGCGGGTTAAAATTGCCTTGTAGTAGTCCGGTATGC 1227863 37 100.0 34 ..................................... CCAAGGATTACGTCGTCGGGGACAAGGCGGTGCG 1227792 37 100.0 39 ..................................... GGTAATTGGGCAACGCCCGTACCGCCGGCTCTAGAATCG 1227716 37 100.0 36 ..................................... GTTAAGACGGCGGACGAGTTGTTGCATGCCGGGTCC 1227643 37 100.0 35 ..................................... CAGCATGGTCGTGGTCGGCTGGCCGAAGATCGAAG 1227571 37 100.0 37 ..................................... TGTTGCCTTCCGCCTTCGCACGAAGGCGCTCCTCGTA 1227497 37 100.0 37 ..................................... GTTCTACGAGGGGTTGGCTGGTAGGTGTCCAGAAGCG 1227423 37 100.0 35 ..................................... TAAAGAACTTGCGGAGTATGTCGCATGGGACTGGT 1227351 37 100.0 39 ..................................... TTCCGTACAACCACAAATTTGACAGATAAAACCAATTAA 1227275 37 100.0 36 ..................................... CCGAAACGAAACGCACTGCCGCTGGGATTTGTAACA 1227202 37 100.0 37 ..................................... CGCCAGCAGCCGAACCGTCAATGTCCTTGTCTCGGTT 1227128 37 100.0 38 ..................................... GGACGGCTTTGCTCCGGCCCCGGCATCCTGCGATTATG 1227053 37 100.0 36 ..................................... CTGAGCAGACACACCTGGGCCGGCAACTTCGTGCGC 1226980 37 100.0 37 ..................................... TCCAAAGCGGCGTACTTGTAACTGGTTTCAGTCAAGC 1226906 37 100.0 37 ..................................... TTTGAATTACTACCCTGGCAAGAGAAGATCGTCCGCG 1226832 37 100.0 37 ..................................... GAGCCGGAATCTGGCAGCCCGCGAAAGGCGGGAGGAA 1226758 37 100.0 37 ..................................... ATGCCACCTTCCCAGTGCTGTGTGTATGCCTGGGCCG 1226684 37 100.0 34 ..................................... GCACCACGATGTCACAACTCCGCAGCGCCGACAT 1226613 37 100.0 40 ..................................... GCCGTAGTATTCGGCGGATCGATCTCGACGCGCAGCCCCT 1226536 37 100.0 37 ..................................... GCCATAGGAAGGCATAAGTAGCTTGGTCTCCTAAAGT 1226462 37 100.0 37 ..................................... CCATTATCGTCGCGCCCGCTGGCGCATCCACCAGGCT 1226388 37 100.0 35 ..................................... ACTGGTCAGATCGATCCGGACCGTATGGAGTTACT 1226316 37 100.0 37 ..................................... ATCATTGTTCTGCTCTGCACTTCCATTGCGCCGCCGA 1226242 37 100.0 38 ..................................... CGAACACGCCGGGCCAGAAGGTGCTTGCGGCTGAACGG 1226167 37 100.0 37 ..................................... ATTTAGTTCGTAACATTTGCGACTACAATATGCGTTC 1226093 37 100.0 36 ..................................... CGCCCCGTGCTTCTTGCGCTGCATAAGCTATCACCT 1226020 37 100.0 38 ..................................... TTTATTTTTGAGATTGAGCGAAGTTGTGGGTTGTATCC 1225945 37 100.0 37 ..................................... GGGGTAGGTTCAGGTCGAACACGAAGAAGTGCGTGCT 1225871 37 100.0 35 ..................................... TTCCCAGTCGGCACTCAAATTTTAATTCAGCAACT 1225799 37 100.0 38 ..................................... GTTGACCGTACCGGTTACGGCGATCCGTTGCGCGTTGT 1225724 37 100.0 34 ..................................... CGTCAAACGCTTTCAGGATTGAGGATTCATCGCA 1225653 37 100.0 37 ..................................... ATTACCTCGGCGACTTGAGGAACTACGGCGTTGCCGA 1225579 37 100.0 37 ..................................... TTTATTTTGTCCGACAGCGTGTTTAGGCCGATTCCCA 1225505 37 100.0 36 ..................................... CGTAACACGGATTGTCGAACCATCGGTTGCAGTGGA 1225432 37 100.0 36 ..................................... GGTACTGACACGAACGCCGACACCTGCCCCGGCACC 1225359 37 100.0 36 ..................................... GGATGTTGTTACCGGAAATGGTGTAGTCTGCTCTGT 1225286 37 100.0 39 ..................................... TCGTATACCACATCGGCGTTGATATAGCGGTAGGCCCCG 1225210 37 100.0 36 ..................................... ATCCAAGCATCCCCGATCCGGGATGCGGCACCAGCA 1225137 37 97.3 38 .................A................... CTACCACCCCAAGGTAGTGTGTTGCATTTCATGCAACA 1225062 37 100.0 40 ..................................... TTTCCCTGACGCACCGCCATTCCTGCAGGACGTACCGCCT 1224985 37 100.0 35 ..................................... GTGCTTCCTGTTATGGCAGGCAGCGCAAACGCTCT 1224913 37 100.0 39 ..................................... CGACAGGTTGCGGTTGAAATGGTAGGGGTCGGTGAGTAG 1224837 37 100.0 35 ..................................... CGGTTTTTCCGGGGCTTCTAAAAAGTCACGGCACC 1224765 37 100.0 36 ..................................... GCGAAGCTTCCCCCGAACGCCGTTGCCTGATATGTA 1224692 37 100.0 39 ..................................... AATCAATGTTCTCCTTGTCTGGCCCACCGGCCCACCTGC 1224616 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 52 37 99.9 37 GTTTCAGCGACCGACCCGACGAAAAGGGGACTGAAAG # Left flank : TTCACCGATTGACTACCACCGGCTATGCCCTCGTAATGGAATCCCTTTATGAATTCCCGGTCAACATCGGCTGTCTGGTTTACGGCAGTTTCCGGGGTGACCGGCTCATCATCAACAAGGACTTGCACATAATTGATGACGAACTCCGCCAGTGGTTTATCGAATCGCGGGATGAAAAAGCCCGCATGGTTTACGAAGAGATTGATCCCGGTTTTCCAGCGGAATGTTATCAGGGTTGTCATTGTTATGCAGCCTGCCATGGGTAGTTTTTCGAAAATGGACTCTTAGGCATAGGTTGGGATGGTCTTGGATGGCACCGTCCCCAGGAAACGATCCTGATGGATCAGCGCGATCACTGTGCTACAGGCGGATCAGAGGTTTTCGCAAAAAGAGGGTGATTTTGTGCAGGTAACCCAGTTTCGAAGAGACTGTGTATTTTGCTCCTTGTGCGTAGGCTGGAACCCTTGCAGCGCCTGGTTTCTTTTTTGACGCCAGGGTCT # Right flank : TGATCGTTTTGGCAAGCAAGCGTGGAAGCGACTTGCGGTTTCAGCTACAGGTACCTTGTTAATGCCTCAATATGCTTGCGTTTCGCACATCCAGGAATATACTGTAGTAGACAACCTTCCTTAATAAGGAGTGTGCGCCGTGATCAGAATGCGGCCGGGGCGGGTTGTGGAAGTGGCAGAGCAACGCCCGGGGGTGTCCGAGGTGCTGGTGGATGTCGAGGGCCGGGTGGAGCGGGCGGTCAACTACGACCTGGTCACCGGGCCGGTGGGGGTGGGGGACCGGGTGGTCCTGAACACCGCGGCGGTGGCTTTGGGGCTCGGGACCGGCGGCGTGCATTTCGTGATGGTGAACCTGGAGCGGCTGGAGTGGGACGGTCCGGAGGCGGGGCACATCATGAAGCTCCGGTACACACCGTTTCAGGTGCAGGTGCTGGCGGTGGAGGAGGAGGCGAGCCCCCACGCGGATCGGTTGCGGGACTGTGCAGGGCTGGACGGGCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCGACCGACCCGACGAAAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1769398-1766737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034260.1 Candidatus Desulforudis audaxviator strain BYF chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================== ================== 1769397 30 93.3 63 T.......A..................... AACTTCCAGGGGGTTATGAGATTCGGGCTATCTCCGTTTCCAGCCTACCTTTTTCGCCTCCTG TA,GA [1769385,1769391] 1769300 30 100.0 36 .............................. TCCTGTCAGCCCCCCTTGACTTGGTTTTGCTACGAG 1769234 30 100.0 37 .............................. GTGATGGTGAAAATGAAATGCTCCGCGTCCCGGAACA 1769167 30 100.0 35 .............................. TTTGGTGGAAGGCACCGTGCGCGTGACGCACGCGA 1769102 30 100.0 36 .............................. AAGAAAGGGAGCGGCGGCTTGCCGAGCGCGAGGCGG 1769036 30 100.0 36 .............................. GCAAGTGCCTAACCCGGCTTTATCCATATTGGCCAA 1768970 30 100.0 37 .............................. CTTGTTGAGTAATCCCGAACGTTATCTTGCTAATGGG 1768903 30 100.0 38 .............................. TTAATTCAGGCCCTGTAGTATAGATATTCTCAAATTGA 1768835 30 100.0 36 .............................. TAAAACTGACGATTAAGAGGGAGGATTAACATGTTA 1768769 30 100.0 36 .............................. CAGTCACACTCGCGGGTACTGATACTGATAATGCTA 1768703 30 100.0 36 .............................. TTCCTTTTGTGGCCAGGATGAGGGGCTGGCCACAAA 1768637 30 100.0 37 .............................. TGGGTCTTAAAGTGCGCTGGGCACATATAAGCCCACG 1768570 30 100.0 37 .............................. CTTTCTGACGGTGAAGGGATGTACTCCGGAGGCATAG 1768503 30 100.0 36 .............................. GAAACACCGATGCCGGCAATCCTTGAGCCAGCTGGA 1768437 30 100.0 35 .............................. CCCGGAGGGTTTGAATCCTATTCGTGATGCCCTCC 1768372 30 100.0 37 .............................. TGCTTTCACCCTCAGTAGTCACGATATCCACTGTCAC 1768305 30 100.0 36 .............................. AATTGCTTTTGTCGTTCTTGAAGAAGCGGTTGAGCA 1768239 30 100.0 38 .............................. AGTGTCGCAGTATCTAAACGATGGCTGGACACTGGAGG 1768171 30 100.0 36 .............................. GGTCCCGCGCTCCTCCTTTGCCAGCCGGAAACACCG 1768105 30 100.0 40 .............................. CTAACATCCGCCGGTTTCTGATCGGCCCGGCTGCGCGACC 1768035 30 100.0 36 .............................. CCGGGAAGAGGAGGTCAAGCGTAGCAGGATCACGCA 1767969 30 100.0 37 .............................. GGGCCGCTTCCACCGCCACCTGCGCCGAGGACGTGGT 1767902 30 100.0 37 .............................. GATTACGGCGTGCCGGACAAATTCCAGCCTGGCCCTG 1767835 30 100.0 38 .............................. TTCTATTGCAGGTTTACGATGATTACCGTAATTTAAAC 1767767 30 100.0 38 .............................. TGGAACCAGCGGGCGCCTAAATTCGAGGCTAGGTTCAG 1767699 30 100.0 37 .............................. CCTGCCCAAAGTCCATAGCCAAACCCACTGTGGACTT 1767632 30 100.0 38 .............................. GGGTGAGGGGCTGGCCACAAAAGGAAAAGCCCCTCCGG 1767564 30 100.0 37 .............................. AATTTCGGCGAATCTTAGTTTGTTGAATTCTCCTGTC 1767497 30 100.0 36 .............................. TGGACTTTGGGCAGAGCGGTTAGCTCTGCCGCAGGG 1767431 30 100.0 37 .............................. GGCTCTTGCAGATGATCTGCCCGTTGAGGTTCTTTAG 1767364 30 100.0 37 .............................. CGAGCCTTCAAGTTCAAGTACGTTGACCGGCTACCCG 1767297 30 100.0 36 .............................. GACAAATTCCAGCCTGGCCCTGAACGTATCCACCTG 1767231 30 100.0 36 .............................. CAGTACGGGAGGAGCTGGCTCTTTGACTTTGCGAAG 1767165 30 100.0 38 .............................. GTGGCCACCCGGTTAGCCCGCCCATCGGTGCCAAGGGA 1767097 30 100.0 37 .............................. GCGGAACTCCAAGGATTTCACGAATGACAACAGTGAA 1767030 30 100.0 36 .............................. TGGCTTTGGGGAACTCCTGCCCGGTGCGGCGGCTCA 1766964 30 100.0 36 .............................. GAGCGACGGTAACAGCGATGCAGAGCGGTTTAAGAA 1766898 30 100.0 36 .............................. CTATGAAAGCAAACACGCTGGCGGCTGGCATAAACC 1766832 30 100.0 36 .............................. CGAAACAGAAGTGGTTCTGGCCCGCGGCGCTGGCCG 1766766 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================================== ================== 40 30 99.8 37 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCTGACCGAAAGCACGGAACGCTTGGTGACCGAGTATGACGTGATGATGGGTAACCCCCCGGACCATCAATTGCTCATTCCAGGAATTGCGGAGCACATCCACCGCACCGGCCGGGTGCCAGAAGGTACCGCTACCGATCGTGGTTTCTGGAATGCCGGTAACGAAAGCGCCTTACAAGCTCTGGGTATACGTAAAATCAGCCTGCCTTATAAAGGTAAACGCAGTCACAGTCGTACCGGACACGAGCGCCAGTCCTGGTTTCGGCGGCTGCAACGCTGGCGAGCCGGTCAGGAAGGAACGATCAGCGTGCTGAAAAGGCGATATGGACTCAAGCGAACGCTATACCGCGGACTGGCCGGATGTCGCCGCTGGGTGGGCGGGGCCGTCTGGGGATACAACCTGAACCGAATCGCTAAGTTGATCTAAGCCCAGGCAGGAACGTTAAACCATGATCAAATTGTCAAGGATCAACTGCCGAGAAGTAGTCGGCAAAGTGCTT # Right flank : GAGTGCGCCGGACTCTGCGCAACCCCTTCGGGGGTATCACCCTCTTGTTGCGTTGTTTTTAGTCCGGGCGAATAACCGCAGAGTGCCAGGTGGCCGTGTGGTTTTCCCAGGCGGTCGTCGTGCTGTGGGGAAGGCCGATGGTGCATCTCACCTACCCGCCGTTGCTGGGCTGGGGGGTGAGCGGGGTGGTCCTGACGTTCTGGGTGCTCCGTAATATGACCCTTTCCGTGTTTGAAGTTCTGCATCTGTAGGATTGGTTTGCTGTCGGGATGGGCGTTTGTGAATAGCTGAATTGTGTCGTTATTGGAGGGAGGATGTGGCGGTGGCGAAGGCCGAGGCGAAATCGAAAGTGATGGTGGTGCTGGTAAGCGAGCAGCGCATGCAGAACCTTATCCCATGCTTTCAGAAGGACAGTACAATCACGAACGTCCACCTCGTACGCTCCAGCGATGCCGATAACCCGGATTCCCGTCTGGGCAAGGCCTGGTCCGACACGAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 3 1772915-1771093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034260.1 Candidatus Desulforudis audaxviator strain BYF chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1772914 30 93.3 36 T.......A..................... CGTTCCTAAAACGACCTATTACCGACGAATAAGAAG TA,GA [1772902,1772908] 1772844 30 100.0 36 .............................. GGTGTTACTACAGTAATAAGCTCCAACCTCGGCTGT 1772778 30 100.0 36 .............................. TAGGTATAGTACACCGCTTGCTTGCAGCGAATGCAG 1772712 30 100.0 35 .............................. GGTGTTTGCGAGCCTTAGACCCACGGTTTCGGCAA 1772647 30 100.0 36 .............................. GAGTTTACAGGGGAAGGGTACAGATCGGGAGATTTA 1772581 30 100.0 36 .............................. GACGGGAGCGGGTGGTGCCGCCGAGAGTCCAGGTGG 1772515 30 100.0 36 .............................. CCAGCGAGGACGTGGTTGAAACACGGCGCGAATGTG 1772449 30 100.0 36 .............................. GGAGCGGCGGAAGGGGTGAGGTAAATGGAGTAGATA 1772383 30 100.0 36 .............................. ATGGTGAGAGCGATTATCGAGGGCCGGAAGACGCAA 1772317 30 100.0 37 .............................. GGTCTAGGTTGCAGGCACGGATAAGTGCATTGTTGAG 1772250 30 100.0 36 .............................. CACAGGCGTACCACGCCGTTTATTTAGCACAATTGT 1772184 30 100.0 36 .............................. TTCCCCGGAATCGCTTCCAACCGCTGTGACAAAGCA 1772118 30 100.0 37 .............................. AGTAGTAGTACACTTGACAACCACCTTTAGTATGTGG 1772051 30 100.0 36 .............................. TTTTGCAGAGGCCTTCGCGCGAAGCGATGGCTCTGA 1771985 30 100.0 36 .............................. GTTCACCTTTTGCCCCTTTGCCCTTTTGGGTGCTGC 1771919 30 100.0 36 .............................. GGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGT 1771853 30 100.0 36 .............................. ATTCTTTGTAGCTAAGTGATGACATGGTTTGCCCTC 1771787 30 100.0 36 .............................. GCGAATGAAAGGAGGCCCCGATATGCCCAAGGTTTG 1771721 30 100.0 38 .............................. TCCCACATAGGTTGCCGCTCTCTATATTCACAGTCAGG 1771653 30 100.0 37 .............................. CATTGGTGGTGTCCCCCGGCGACCGCCGAAGGAGTTA 1771586 30 100.0 36 .............................. AGTGCTAGACAAGCACTGGCCCGGAGTGCCGAAATT 1771520 30 100.0 36 .............................. GGGAGATTGCGGACATCTCCATCGGACTGTAAAAGC 1771454 30 100.0 36 .............................. ATTCGTGTGCGCATTGCAGTGGATACTGATGTAACA 1771388 30 100.0 36 .............................. AGGAGGCATATATCTTTGGTAACATCAAGCACCGAT 1771322 30 100.0 38 .............................. AGTGACTTTGTAGAGCGTGTTGCTCACGATCTGTTGAG 1771254 30 100.0 36 .............................. GTTTTTAGACCGGAGGGGAAGTTGGGGGTTAGGAAA 1771188 30 100.0 36 .............................. GTGGGATCCGAGCCGGGCGGCTAGGAGTTCAAAGGC 1771122 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.8 36 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCGGATTTTAGTCAGGCTGGAGGGATGGGGCACCGGCTTATTCCAGGGAATGCGACAAAACCGGCGCCAGCTGATCCGATCCTTAACCAGAGCACAGACCTGCCGGTCGCTGAGTCTGTACTGGTGCTTGAGTGCTGTCATACGCAAATAGGTTTCCGCCGGTACGGACGGTCGCCCCAAACACCGATGGTACTTGTCCTGAAATGGTTCGAAGAAGCGCTCATCGTCCAACCAGGCGTCGAGTTTGGCCAGATCTTCCGGGAGTTCAAGCACCTCCGGCGGCAATATGTAGTCCAAGAATGATACTTGTCGACTTTCTTCCTGTCGGAGGCATAGCATTACTGCTCACCTCCGCAGGAACCGAAGTTTTTATGTTGAACCATGATCAGCATAGGGATTCCCTCCTGGTGTTTGTTTTGGTTTGGTCACCTTAAACAATTCGCCACGGAGACCGGAATCCCTTGATTTATCTAGGTTTTCAAGGATCTTTATGGCTGAGT # Right flank : TCCCTTACCGATCGGGAGGACGGCTGCTCTTCCCGAGTTTCCAGCCTACCTAGATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAAATCAAGGGATTCCGGTCTCCGTGGCGAATTGTTTAAGGTGACCAAACCAAAACAAACACCAGGAGGGAATCCCTATGCTGATCATGGTTCAACATAAAAACTTCGGTTCCTGCGGAGGTGAGCAGTAATGCTATGCCTCCGACAGGAAGAAAGTCGACAAGTATCATTCTTGGACTACATATTGCCGCCGGAGGTGCTTGAACTCCCGGAAGATCTGGCCAAACTCGACGCCTGGTTGGACGATGAGCGCTTCTTCGAACCATTTCAGGACAAGTACCATCGGTGTTTGGGGCGACCGTCCGTACCGGCGGAAACCTATTTGCGTATGACAGCACTCAAGCACCAGTACAGACTCAGCGACCGGCAGGTCTGTGCTCTGGTTAAGGATCGGATCAGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 4 1780363-1774656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034260.1 Candidatus Desulforudis audaxviator strain BYF chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1780362 30 83.3 18 T.......A.......G..A.........G AAATTGCGGTCAAAATGG TA,GA [1780349,1780355] Deletion [1780315] 1780310 30 100.0 35 .............................. TCTTAACCGGCCAGGTCCTGATCCGGGTCGGCATG 1780245 30 100.0 35 .............................. GCTTCCTCGCCGCATGCTTCGCACGGTCCATAGTA 1780180 30 100.0 36 .............................. GCTACTTTGATTATACTACACTTGTCGTTTAGTGAG 1780114 30 100.0 36 .............................. CCCGCAATCAAAACTTCACCGTCCAGCGGATCATTA 1780048 30 100.0 35 .............................. GCCGATTCTGGATGCCGCTCTGGGTGACGAGTGGA 1779983 30 100.0 36 .............................. GGCGCGGGTGAGTTTCTACATGTAGAAACTACAGCG 1779917 30 100.0 36 .............................. ATTTTTTTCGGCTTGATACAAGGATATTACAAGCGT 1779851 30 100.0 36 .............................. AACTAACACTCTAGTTCATGTTCGTTGGTTCGTTGG 1779785 30 100.0 36 .............................. TCGGGGAGGACTAGCTCGACAGTGTTTTTCTTGTCG 1779719 30 100.0 35 .............................. GAAAAAGATCAGCAGCGCTAAGGCTTTCTTTAGCC 1779654 30 100.0 35 .............................. ACTAAACCAGCACTAAAAGCAAGGGGGTGACAAGA 1779589 30 100.0 38 .............................. GGCTCTACACGAACTAGGATCACAAGTGGATACAAAAA 1779521 30 100.0 35 .............................. AGTCTTCACACCTCTAATGCTGCCCCAGCGATCTC 1779456 30 100.0 36 .............................. ATTCTTTGTATTTCCATTCTTCGGGATAGGATAGTC 1779390 30 100.0 37 .............................. TGCCGAATCTCGGCGAATTTTATTCTGTTGTATTGAC 1779323 30 100.0 36 .............................. CCCTCCGTAGGTTTTACTCCCGGAGGGGTTGGGGTG 1779257 30 100.0 40 .............................. ATCCGGGGCTTTGGGCAGAGTGGTTAACTCTGCCCGAAAA 1779187 30 100.0 37 .............................. TGCCGAATCTCGGCGAATTTTATTCTGTTGTATTGAC 1779120 30 100.0 36 .............................. CCCTCCGTAGGTTTTACTCCCGGAGGGGTTGGGGTG 1779054 30 100.0 37 .............................. TTAGGCAAACCGTTCCCCTAACCGTTCCCCTAACCGT 1778987 30 100.0 36 .............................. CTTCTGTCTGCCTGCTTGCTTGTCGCTCCTTTCACC 1778921 30 100.0 35 .............................. AGAGCTAAAGGCTGCTATGAAATATGGCCTATCAC 1778856 30 100.0 37 .............................. AGGGCAATCAGCCGGTACAACTCATCATCGGGCAGCT 1778789 30 100.0 35 .............................. CAACGTACAGCTCTGTACCCAACGGGATCACCCGG 1778724 30 100.0 35 .............................. GAATTATTCCGGCCGAAATACTCTCCTGCACCTTC 1778659 30 100.0 36 .............................. CGTTGCTGAGTTAGAAGCCACCTGCGCGGCGCTACG 1778593 30 100.0 36 .............................. TTCGGGACATTAAGTTGCTCAACTCACTTTGCAAAA 1778527 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1778461 30 100.0 36 .............................. TTCGGGACATTAAGTTGCTCAACTCACTTTGCAAAA 1778395 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1778329 30 100.0 36 .............................. CATAGTAACATAAGAGCTCCAGTCACACGAAAATAC 1778263 30 100.0 35 .............................. CCTTTTTAAGCAATTTGCTCATCACTGCCACCTGT 1778198 30 100.0 36 .............................. TAATCTCGGTCCTTCACGCCGCCGCGCGCGAGCACC 1778132 30 100.0 37 .............................. AGAATAAACGCGCCGAACAGGATCAGCATCCCGGATA 1778065 30 100.0 36 .............................. CTGGAGACAAGCGGGGGTACTGCTGGGGAAGCGCAG 1777999 30 100.0 37 .............................. GGACCCGGTGCGTCCGGCTAGGAAAACATGCTCATTG 1777932 30 100.0 40 .............................. TAAATCCCGGCAGGAAGAAGTAAAGAAAGAAGGAAAGAGG 1777862 30 100.0 35 .............................. ACTGCTCGTAGAACCGGCCGACGATCCCGTGGGAA 1777797 30 100.0 35 .............................. TCAAGCACTTCCACCCGCAAAAATGCAGCATTGCA 1777732 30 100.0 36 .............................. GTTTGCAAGGAGGAGTTATTTGCAGAGGATTTCCGG 1777666 30 100.0 36 .............................. CCTGATCTGCCGCAGGCGGCCGAGAGGTGAAGGAGG 1777600 30 100.0 36 .............................. AAGAGGCGGCAAAAGTGGCACTGAAGCAGGGCTAGC 1777534 30 100.0 37 .............................. TCAAGAATCCGGGCACCGATCATTGAATCCCCTTTCA 1777467 30 100.0 35 .............................. GTTTTTGTTTTGCCAAGGGTTGTCTGCCCCGTGCG 1777402 30 100.0 37 .............................. ATCCCGGCCAGGTTGTGGGCCCAGTTGCCCCGCCATC 1777335 30 100.0 36 .............................. GTCAATCGGTCTCGCTGACCTTACGGCCACTTCTCC 1777269 30 100.0 36 .............................. GCAATTCGTGCATGCGCCCGAACCTGCTCGATCACT 1777203 30 100.0 37 .............................. GCCGCCAAGGGGGATGAAGGTCATCGTTGCCCAAATC 1777136 30 100.0 37 .............................. TTGATACTTCCCCAGCGATCTTTTAACATTTTTTATC 1777069 30 100.0 36 .............................. TGGGTGCGGTGCAGGACGTGATAGACTGAACGGCAC 1777003 30 100.0 36 .............................. CTAGCACGATCTGATGGAAGTGGTGCGTGGGTGTCT 1776937 30 100.0 36 .............................. GGCCAGCGACCATCGTGGCCCGGGATCACGGGGACC 1776871 30 100.0 36 .............................. GTAGCTCCAGCACCACCATTACTGCCAGCACTTGCA 1776805 30 100.0 36 .............................. AATCGGTCAGAATGTCGGCCGCCGAAGCCGTGCCGT 1776739 30 100.0 37 .............................. CAAACAGGTCGTCCAGAGGCGTCGGAGCCGGAACCGG 1776672 30 100.0 36 .............................. ACACGAACGACGGGTCCACGTTCAGCGCCCGTCCGG 1776606 30 100.0 36 .............................. GCCCAAATCCTCGGCATTTCTTCACCCTCCTTTCCA 1776540 30 100.0 37 .............................. GGTACAAACTAGAAAAGGTTTCCAGACTTATAATTTC 1776473 30 100.0 38 .............................. GCATTTGCTCCACCTTCTCACAAGCCATCCCTGCTCGT 1776405 30 100.0 38 .............................. TGCGGCTTCTGGGAGGAAGCTACGCCGACTTTCGGGGT 1776337 30 100.0 36 .............................. ATTCCCCCGGCTAGATAGACAACTCTCGGTATAAGG 1776271 30 100.0 37 .............................. AGCGGTATCTTGAGCTTGACGCACAAATTGCAGAACT 1776204 30 100.0 36 .............................. GGATAGGATGCCGCCCGCGTTCAGTACAATAGAACA 1776138 30 100.0 36 .............................. GTAGGCGCACCTTCGTTCTGGCTGCTTTGCGGCGCA 1776072 30 100.0 36 .............................. GAAACAGAAACCGAAACCAGAAACAGAAACCGAAAA 1776006 30 100.0 38 .............................. CTTGATTCTAAGCCTAGCACGTACCACCCCCCGCTGTC 1775938 30 100.0 35 .............................. ACAACAAGCACATCTCTGTGGATAACCCCACAAAA 1775873 30 100.0 35 .............................. CTTGGTATGTGCTTGTGTTTCGCGCCCTGGTGTTT 1775808 30 100.0 37 .............................. CCTTGACCGCCACTTGGTCTCTCTTACCCCAACGATC 1775741 30 100.0 38 .............................. TTGCTGGGCAGCCTACGTAACCCATTCTTCCACCTCCT 1775673 30 100.0 36 .............................. CAGGTCGGTTCACTCTCTCACTCCTTACCCGCCAAC 1775607 30 100.0 36 .............................. ACGTAGGGTCGGGTGCAGATCACGGGCTATGGCGGT 1775541 30 100.0 36 .............................. CTAGCACGATCTGATGGAAGTGGTGCGTGGGTGTCT 1775475 30 100.0 36 .............................. CATCTAAGCATGATCGATTACCTCGATGTTGATAAT 1775409 30 100.0 36 .............................. ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC 1775343 30 100.0 35 .............................. CCTCAAATTAATGTTTTCAAAGAACAAGGAACCAA 1775278 30 100.0 36 .............................. GTTCGACAGAGTTTTTGCCGGTTTCGCTGGTTTTTG 1775212 30 100.0 36 .............................. GTGCCCACTTTTGGAGCGTTGCTGGGACTTTAGCTT 1775146 30 100.0 36 .............................. TTGTGCTATGCTTTTAGATTTCCCACGATAAGTAAT 1775080 30 100.0 37 .............................. AATCTTAGACCCCGCTGAATATCCTGAAAACGAATTC 1775013 30 100.0 35 .............................. ATGCTAATGCCTGCGCCTAAAACCCTGCCTATCGT 1774948 30 100.0 35 .............................. TAAATACCGCCGCCGTGCGGTTGGCCGCATAGCCG 1774883 30 100.0 37 .............................. TTTGCAATGGGATACGACTACCGGCGGATATTCGGTC 1774816 30 100.0 35 .............................. GTGCCCAGACTGCTGCCAGCGAGCAGCCAAGCTAG 1774751 30 100.0 36 .............................. GATCCACTAAATGCCATAATGCCGCTGGAGACAACC 1774685 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 87 30 99.8 36 GTTTCCAGCCTACCTACGAGGGATTGAAAC # Left flank : CCGGATTTTAGTCAGGCTGGAGGGATGGGGCACCGGCTTATTCCAGGGAATGCGACAAAACCGGCGCCAGCTGATCCGATCCTTAACCAGAGCACAGACCTGCCGGTCGCTGAGTCTGTACTGGTGCTTGAGTGCTGTCATACGCAAATAGGTTTCCGCCGGTACGGACGGTCGCCCCAAACACCGATGGTACTTGTCCTGAAATGGTTCGAAGAAGCGCTCATCGTCCAACCAGGCGTCGAGTTTGGCCAGATCTTCCGGGAGTTCAAGCACCTCCGGCGGCAATATGTAGTCCAAGAATGATACTTGTCGACTTTCTTCCTGTCGGAGGCATAGCATTACTGCTCACCTCCGCAGGAACCGAAGTTTTTATGTTGAACCATGATCAGCATAGGGATTCCCTCCTGGTGTTTGTTTTGGTTTGGTCACCTTAAACAATTCGCCACGGAGACCGGAATCCCTTGATTTATCTAGGTTTTCAAGGATCTTTATGGCTGAGT # Right flank : TCAATTCGATAAGCCGCTGGCGGAACAGCTCTTGAGTTTCCAGCCTACCTAGATTCTGCTGAAAAACTCAGCCATAAAGATCCTTGAAAACCTAGATAGATTCTGCTGAAAAAAGCACTTTGCCGACTACTTCTCGGCAGTTGATCCTTGACAATTTGATCATGGTTTAACGTTCCTGCCTGGGCTTAGATCAACTTAGCGATTCGGTTCAGGTTGTATCCCCAGACGGCCCCGCCCACCCAGCGGCGACATCCGGCCAGTCCGCGGTATAGCGTTCGCTTGAGTCCATATCGCCTTTTCAGCACGCTGATCGTTCCTTCCTGACCGGCTCGCCAGCGTTGCAGCCGCCGAAACCAGGACTGGCGCTCGTGTCCGGTACGACTGTGACTGCGTTTACCTTTATAAGGCAGGCTGATTTTACGTATACCCAGAGCTTGTAAGGCGCTTTCGTTACCGGCATTCCAGAAACCACGATCGGTAGCGGTACCTTCTGGCACCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //