Array 1 561106-562152 **** Predicted by CRISPRDetect 2.4 *** >NC_017218.1 Bifidobacterium breve ACS-071-V-Sch8b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 561106 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 561174 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 561241 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 561307 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 561375 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 561441 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 561508 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 561574 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 561642 33 97.0 35 ..................G.............. TCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA GG [561662] 561712 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 561779 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 561846 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 561915 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 561983 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 562051 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 562120 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 98.1 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGAGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1654850-1654072 **** Predicted by CRISPRDetect 2.4 *** >NC_017218.1 Bifidobacterium breve ACS-071-V-Sch8b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1654849 32 75.8 34 .AACAGA.A..-..................... TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1654783 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 1654715 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1654647 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1654578 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1654512 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1654443 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1654375 33 100.0 35 ................................. CTTGTACACGGCGCACATCGCCGCGCAGTCGAACG 1654307 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1654239 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1654173 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1654104 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 98.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TGCTCCTCGCGCCAACGCTTCACATACCGTTGCACCGACGAGTACGCGCCCCCGTAGCCCCTCTCCGAAACGAGCCGGTCGTACACGCGCTTGGCGGTGTGCCGCTGCTTGCGCGGCATGAACCGGTCCGCCTCCAGCCACCCGTCGACCGTCGCCTTGAACGGGTCGAGCTTCGACGGCCTCGATGCGGAGTGCTCCGGCTTGGGAGAGCAATCCTCCCTCCCGGCGTATTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTTGCGATGCTTCTCCATGACACGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAACCGAATGGTTTGCTTCCGACTCGGGAAACTAGTACGGGCAGGACGGGCCGGTGTTCATTTCTCGCCACACGCTGAAATGGACTAAAACCTGCCGCTCATCTGGAGACTTTCCACACGCTCACACGGCCCACTTTCTATT # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCGGAATTAAACCGACATCGGTTTAACAGTGATTAAGCCGGGTTTGTTGTTAAGCCGGGGAACGGTTCGGGGTCTTGGTGGCTGGCCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1659828-1657368 **** Predicted by CRISPRDetect 2.4 *** >NC_017218.1 Bifidobacterium breve ACS-071-V-Sch8b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1659827 33 100.0 35 ................................. AGCAAGGTCACCGGCAAAGCCGCCGCCTTCGGCAG 1659759 33 100.0 33 ................................. CGTTGAGCATGGCGGACATGCTCGTTGACGCTA 1659693 33 100.0 35 ................................. CCACGATGCCGTTTCTCGCGTCCTTGGCCTGCCAC 1659625 33 100.0 36 ................................. CGCAGGAACGATAGCAACGCCTGGGCCGGCAATCAG 1659556 33 100.0 34 ................................. CTCTGGATCGTTCCGAGGCCGAAGCGTTGCGCGA 1659489 33 100.0 35 ................................. TCATCCAGCAAAGCCATCAACGGGACGCCGAAGAA 1659421 33 100.0 35 ................................. ACCCAGGGTGCTCCCACCGGCAGCGGCGTGGCCGG 1659353 33 100.0 35 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCG 1659285 33 100.0 33 ................................. CTGCGGCCGCGCCGGGCATGAGCACCACTGGCA 1659219 33 100.0 34 ................................. TCCACCTTGGCGTTCTGGTATGCGGGCCAGCTCA 1659152 33 100.0 34 ................................. TCCAGCATCCCAGGCCGTATCCTCTCCGCATTGG 1659085 33 100.0 34 ................................. GTGCATCCCGGCATGTCCAGCCAACAGTCGTTGC 1659018 33 100.0 34 ................................. AGCCAGGACGCGGCGGGTTGGGCGCGTGCCTTCG 1658951 33 100.0 33 ................................. AACACCGCGAGAATCAACGCGCGGAGCTTGGTG 1658885 33 100.0 35 ................................. TCGACAAACCGACAAGCACGACCGGCATCGACCGG 1658817 33 100.0 35 ................................. CTCACCGGGCACGGCTCCCCGACCATCGACGGCAA 1658749 33 100.0 33 ................................. AGACATGGATCGTGAGGCGGGTTTGGCCGGTAA 1658683 33 100.0 34 ................................. CATGTCCAGCGTCCGGTAGCGCATGTTGAAATAG 1658616 33 100.0 35 ................................. GCGTAGAAACTGTCCGAATTTCGACGTGGCGACTT 1658548 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1658481 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1658415 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1658347 33 100.0 36 ................................. AACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAA 1658278 33 100.0 33 ................................. GAACGTGGCGTGACCGTATGGAACAAACCGGAG 1658212 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1658146 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1658079 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1658013 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1657946 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1657878 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1657808 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1657741 33 100.0 35 ................................. TCATTGGCCTGCGCCACCTCGTCGGAGATGAGCCG 1657673 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1657605 33 100.0 36 ................................. GCCACGCCGAACTGCATGGATGCGATCGCGCCCCGC 1657536 33 100.0 36 ................................. CCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTAC 1657467 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1657400 33 78.8 0 ..................T.T..TTTG.C.... | ========== ====== ====== ====== ================================= ===================================== ================== 37 33 99.4 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTTGTGGGCCGTTTCGGCGTTTCTTTTAGTCCGTTTGAGCGGTTGTTTTTAGGCCGTTTCGGCTTTGGCCAGTCCTGTGGGTTGTCGGTTATTGCATGAGGGCGTGGGTCTTGCGCCAGGACTCGCCCTCGAATCTGATCATCCTGCCGTGGTGGACGGTGCGGTCGATGATCGCGGCGGCCATGTTGGGGTCGCCGAAGATCCTGCCCCATCCGGAGAACTCGATGTTGGTGGTGTAGATGATGCTCTGGGTCTCGTACGCGTTGGTGACGACCTGGAACAGGAGCCTGCTGCCTTCCTCGTCGATGGGCACGTAGCCGAGTTCGTCGATGATCAGGAGCGGGGTTCTGCCGATCATGGCGAGTTCCCGGTCGAGCCGATTGTCCGTCTGGGCGCGTAGGAGCCGCATGACCAGGCTTGCGGCCGTGTGGTAGCGCACGGGCATGCCCCTGCGGCATGCGTTCCTGCCAAGCGCGATGGCGAGGTGGGTCTTGCCGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //