Array 1 42818-40695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGQ010000002.1 Clostridium perfringens strain C30 NODE_2_length_283255_cov_95.9493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 42817 29 100.0 36 ............................. GTAAAGCTGCTACTATTTCTTTTTCTATTTTGATAC 42752 29 100.0 37 ............................. GGAAGAAAAGGATTAGTAGTAAGAAAAGTTTCTAACA 42686 29 100.0 36 ............................. TTCCTTTTTATCCTCTATTCTATAAGAAATATTTTT 42621 29 100.0 36 ............................. AGGAAAACTGTGGGAAAAGCGTATGTGGGCTGATAA 42556 29 100.0 37 ............................. TTAAGAGAAGAATCTAAGTAATTCTTTAAGCTTGTAA 42490 29 100.0 37 ............................. TTTATAAGTACATGGCTTCTTTTCCAACCAGTAACAC 42424 29 100.0 36 ............................. ACTTATGAAATAGAAAATATATTTAAAAGAATAGAT 42359 29 100.0 36 ............................. TGGACAACTAAAATAAAATTTAAACATATGGATAGT 42294 29 100.0 36 ............................. TTCTATATGGTTTTCGCCTTTTCTTAACTCTATTTC 42229 29 100.0 36 ............................. ATTCCAGGTAGATGTATTGATAGCTTAGATAATTTA 42164 29 100.0 37 ............................. ATTAACGGGTACTAGAGAGTTTGATAAAGAATTCTCC 42098 29 100.0 36 ............................. TCTTTAAGAGCTTGTACACCTTTAGTAACAGCACCT 42033 29 100.0 36 ............................. TAAATATGATTATGAAATCCCTTATGTAGCAACTTA 41968 29 100.0 37 ............................. TTAAAATAATTATTAAAGTATTAGTAAAATCAGGATG 41902 29 100.0 36 ............................. ATTCAACACTAGCACCTTTAAAAGTTTGTAGTAATT 41837 29 100.0 36 ............................. GTATGAGTTGTATATCCAGTAACCCACACTTCTCTC 41772 29 100.0 37 ............................. TTACCATAATTAATAATAACAGCATTTTTTCTAAAAG 41706 29 100.0 36 ............................. ACCAAAAAACTTAAAAAAAGAAATAAAGGTTTAAAC 41641 29 100.0 36 ............................. TTACAAAATTTTTAATAAGTCTTATAATAGTAATTG 41576 29 100.0 36 ............................. AGCTTAAGAATTGGAGATACAGTATAAGAGAGTAGA 41511 29 100.0 37 ............................. AAAATTTATTTTAACATTATTATATTATAAATGTATA 41445 29 100.0 36 ............................. CCTGCATACCTTCCATGTCTTTTGTTAATATCATTT 41380 29 100.0 36 ............................. TTTACTAGAGTGTTAAATAATTTAAAGCTTACATAC 41315 29 100.0 36 ............................. AGAATTATTCTTAGAAAACAGTAAAGACATAGTAGT 41250 29 100.0 37 ............................. ACACTAAAATATTACCTGTTTATTTACCCTTTTAACA 41184 29 100.0 37 ............................. CAACCAGGAGCTTTAATAGTTGAAGGTTATGTATTAA 41118 29 100.0 36 ............................. GGATTACTATAGTGGGAAATATAAAATGACTAATGA 41053 29 100.0 36 ............................. TTAACTGTTGGTTTTTTATTTGTCATAATCCATAAT 40988 29 100.0 37 ............................. GATGATAGTGATTGGGATTGGAATACTTTTATTGGCG 40922 29 100.0 36 ............................. ATAACAATTAAAAATTTACACGCAAATAAAAAAATA 40857 29 100.0 36 ............................. TACCTTTTAATTTATCTTTTTGTGCTTTATAGGTAG 40792 29 100.0 38 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCATG 40725 29 82.8 0 T................GAA....C.... | C,A [40697,40721] ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.5 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATATTTATTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTCCATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //