Array 1 247426-247123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHQV010000001.1 Streptococcus pyogenes strain GAS131286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247425 36 100.0 30 .................................... TATCACTAACTCCCTATTGCGTGGGGAACT 247359 36 100.0 30 .................................... TGTTTCTTGCAATCGCAATATTTGGGATGA 247293 36 100.0 30 .................................... TTAGAGGCCTATTTCACAGACAAAGACATC 247227 36 100.0 30 .................................... GACTCATCCCAACTACCGTAAGCCCTAAAG 247161 36 94.4 0 ..................C.............T... | CT,T [247125,247131] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACCAAGAAAAAGTTAGTCGTCTTTGTCAATAGCGGAGCTTTTCTAACAAAAGAGGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGATTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCACTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGTGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTAGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTCGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGCCTCATTCAAGAGACTCTGCTAGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 512968-512073 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHQV010000001.1 Streptococcus pyogenes strain GAS131286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 512967 32 100.0 34 ................................ AAGCTAAACCTATCCTAAAAATCAAAGGCACAGG 512901 32 100.0 33 ................................ AATGACTATTATGGGGATATCTGCCACGATATA 512836 32 100.0 34 ................................ ACCAATAATTCTAAAGTCGCTATCTCTATCTACG 512770 32 100.0 33 ................................ TTATAATACAACCAATAGACATAATCTAGAATC 512705 32 100.0 37 ................................ AAACTATGTGACTGACACTCTGGACTATGTCAAATAC 512636 32 100.0 34 ................................ TGCTGTAGGTAAAGCCGATAATAACTGGGGCGGA 512570 32 100.0 33 ................................ AAAAAAATAGCTAAGATCGCTACTGTGTCTGCT 512505 32 100.0 35 ................................ ATGTAATCCTGTTGTTAACTTGTCAAAGTCATAGA 512438 32 100.0 35 ................................ AAAAACAAATCGTTATCAATTTGCGTCTTTCCAGC 512371 32 100.0 34 ................................ GATTCCCCCACGAAGCAAACAAGAATTCACAGTC 512305 32 100.0 37 ................................ ACGTAAAATATTAATCAGTGTTGATTTACCAGTAACC 512236 32 93.8 34 .......TT....................... AAATTTGGCGAGGAGAGCGTGAGGCGAATCTAGT 512170 32 100.0 34 ................................ ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA 512104 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.3 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGAACTATGGACAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGAGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCTTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //