Array 1 8711-7157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHI010000009.1 Streptococcus suis strain K06-WJ Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8710 36 100.0 30 .................................... CTATCTATTTAGTGAAATGACAATCGAAAC 8644 36 100.0 30 .................................... CGACGTACCGAGCGACCGGGTGCTGCTGGA 8578 36 100.0 30 .................................... TCGATAGCGACGCCATTGTCCTGCGTGACC 8512 36 100.0 30 .................................... TGGAATTGGGCAAGCAATACGCTTTGTTTA 8446 36 100.0 30 .................................... GATTGACAATGGAACAGAAATTGTCGATAA 8380 36 100.0 30 .................................... CTTGAGATAATAAGAAACCTTCAATGATTC 8314 36 100.0 30 .................................... TATTGGCAATTTCCGTAAACTGAACGACAT 8248 36 100.0 30 .................................... GACTATACCTGGTCACTAATCAAGGGAGAC 8182 36 100.0 30 .................................... TGGACGCTATACCGTGGTCGATAACGAAAC 8116 36 100.0 30 .................................... ACCAACTAGCACCAACGGCAACACAAGACC 8050 36 100.0 30 .................................... GGGCGGTACAGCCGTTACTGGATTGAACGT 7984 36 100.0 30 .................................... CTGCAGTTGAGCTGGATACTTGAGCCTGTC 7918 36 100.0 30 .................................... AAATAAAATTATTTCATTCTCGGACTTAGG 7852 36 100.0 30 .................................... TGCACAAGTATCTGGAAATGCTATAGTAAA 7786 36 100.0 30 .................................... ACTCATTAACGAGCTAGTACACTGGGATAA 7720 36 100.0 30 .................................... CAAGCAACATGAAAGAAGAAGTTAACACGC 7654 36 100.0 30 .................................... GGCCAAAAGAAGGTCTAACTGCAGCATCAT 7588 36 100.0 30 .................................... TGTACCATTCGTAACCGTTCAGACGGTAGC 7522 36 100.0 30 .................................... CTCTTAACTTTCTATCTGAATTCAAGAAAA 7456 36 100.0 30 .................................... ATTGGTCTTAAAAACATATAGAAGGTATTC 7390 36 100.0 30 .................................... TGGAGAAAATTTTATACATTGGCATTGTGG 7324 36 100.0 30 .................................... AAAACCTGATAGGAGTTGTATTAAAACTCA 7258 36 100.0 30 .................................... CAAAATAAAATTATTGTGATTTTATAGGTT 7192 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTAAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGCGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATATATAATCGTTTTACTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGGGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTGAAAAATATTGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //