Array 1 244318-243029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHY010000003.1 Escherichia coli strain PBIO869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 244317 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 244257 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 244197 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 244137 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 244077 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 244016 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 243956 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 243896 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 243836 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 243776 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 243716 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 243656 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 243596 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 243536 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 243476 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 243416 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 243356 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 243296 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 243236 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 243176 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 243116 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 243056 27 92.9 0 .......................C-... | T [243037] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 253944-253374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIHY010000003.1 Escherichia coli strain PBIO869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 253943 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 253883 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 253823 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 253763 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 253703 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 253643 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 253583 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 253523 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 253463 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 253403 28 85.7 0 ....................T...C.CT | C,A [253377,253380] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //