Array 1 7577-4619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHJ010000022.1 Clostridium perfringens strain 1805-92 NODE_22_length_39990_cov_76.7934, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================== ================== 7576 29 90.0 37 .....T........-......T........ TGTGGTAAAGATATAAAGGGTAATCCATTAAAATGGA A [7565] 7509 30 90.0 36 ............CT.......G........ GTAAAGAACAAGAAGTGATTGCACATTTCGATGACT T [7486] 7442 30 90.0 36 ............CT.......G........ ATTAGAATTTAAACTTTGTATATCACTATCAAGCGT 7376 30 90.0 37 ............CT.......G........ ATGGACTTAGCTTCTTAAGAGAAGAAATTGCAAAGAA 7309 30 90.0 36 ............CT.......G........ AAAAGTTAGAAAATGTAAGTAATTGAAAGTTAATTT 7243 29 93.3 37 ..............-......T........ CTAATGACTTTAGTTTCCCTATAGTTGTGGAAGTTGA A [7232] 7176 29 93.3 36 ..............-......T........ TATTAAGACTTTTTGGAGTGTTTTAGGAGGAACTAA A [7165] 7110 30 100.0 34 .............................. TATCTAAATTCCTAATGTTTAATTTTATTAAAAG 7046 30 100.0 37 .............................. CTAACTTGGCAGAGGTAAATAAACAAGCTATTAAGCT 6979 30 100.0 35 .............................. AAAGCTGGGTTCATGGTAGAATTCAAAACTTATGC 6914 30 100.0 36 .............................. ATTAACAACAAAATTTATAGATGGAGAAATATATTT 6848 30 100.0 36 .............................. CTAACAATATAATCATTTAAAAAAGCTATTCGTTAA 6782 30 100.0 36 .............................. GCATACTTTTCAGTTAACATTTGTAATTCTACATTT 6716 30 100.0 34 .............................. CAGAATATCTAATTTGATAAATTCTAAATAATTC 6652 30 100.0 222 .............................. ACTTGTAAAATAGCCATTTTAATTTATTAACTTTTTACTAAAACCTAGTTATTTCAATAAGTACATTATAATTTTACCAGTGTTTTTCAAAATTTTAAAGTGCTCAAACAAAATAGGTCTTAAACCTGCTTATTTCAATACTTAAATCATATTCTCACTCTCTTTTTTACTGGTAAAATAATCAACTATAGAGCACTTAAATTCTAATAATATTTAAGCTCC 6400 30 70.0 37 TA....TA.A..A........C......CT ATTGGAAGACAGGTATTAACTAAAAATATGCTCATAA 6333 29 86.7 36 A.............-.....GT........ TATTTAATCAAATTGCAAAAACAAGAGAAGAAATGT A [6322] 6267 30 96.7 36 .....................G........ TAAAATAAGCCAAATAATAGATAGCTATAAAACATC 6201 30 96.7 36 .....................G........ TTTTTATTGAACACTATTAAATTTAAAAAAATAAAA 6135 30 96.7 36 .....................G........ GTCATACATTTTTATGTAATAAGCGTCTGTATCAAC 6069 30 96.7 220 .....................G........ TATTGCAAAATAACCATTTTAACTTATTAGCTTTTTACGAAAATCTAGTTATTTCAATAGGTACATTATAATTTTACCAGTGTTTTTCAATTTTTTAAAGTGCTTAAACAAAACAGGTCTTAAACCAACTTATTTCAATACTTATATCATATTCTCACTCTCTTCTTCACTGGTAAAATAATTAACACTAGAGCACTTAAATTCTAATAATATTTAATTT 5819 30 80.0 34 C...T....G.C.....T.....A...... CCAAAGCCTCTCACTATGAGTTACAGCTTAAACA A,A [5805,5816] 5753 30 93.3 36 ....................GT........ AGAATTTTTAGGTTATATAAATTGGATTATTCCAGT 5687 29 93.3 36 ..............-......T........ ATTACATTCCCAAACTCATCTTTTAATGCAAATCTT A [5676] 5621 29 93.3 36 ..............-......T........ TTGTACACCAAAGGGAATTATGACAATACTAAAACA A [5610] 5555 30 100.0 34 .............................. GAGAAGAAGACATTGACGAAGATGAATACGAAGA 5491 30 100.0 35 .............................. CTAAAATCAAATGCAAAATTTAAACAACTATCAAA 5426 30 100.0 36 .............................. ATTTACTTGTAAGTTCCAAAAATCTAAAGCTAGTGT 5360 30 100.0 221 .............................. ACTTGTAAAATAGCCATTTTAACTTATTAACTTTTTACGAAAACCTAGCTATTTCAATAGATACATTATAATTTTACCAGTGTTTTATATTTTTTAAAGTGCTTAAACAAAACAGGTCTTAAACCCACTTATTTCAATACTTATATCATATTCTCACTCTCTTCTTCACTGGTAAAATAATTAACACTAGAGCACTTAAATTCTAATAATATTTGAGTTCC 5109 29 86.7 35 TA.......-..A................. AATTCTTACAAATAAAGCTTAGAAATTGAAGCTAA T [5104] 5044 30 96.7 36 .....................T........ TTCTCAAGTTAAGGCTTCTCAGAAAGCGTCACACTA 4978 30 96.7 35 .....................T........ CAAGCAAGAATGTTTGGTAATTTAAAAATAATAGT 4913 29 93.3 36 ..............-......T........ AAACTATTATAACTTAGGTGTGGGAGTTTTCCCAGC A [4902] 4847 30 90.0 35 ............CT.......G........ CTTTTAAGGGTGGTTGATGTATTAACAGAATCAAC 4782 29 93.3 37 A.............-............... TAGAAACTTTTAAAGTTGGAGATACTATATAAACTAA A [4771] 4715 30 83.3 37 A...........AAC..............A TATGTAAAGTGTAATAGGTATTATTTTTAAACATTCA 4648 30 93.3 0 .....................C......C. | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================== ================== 37 30 93.9 51 GTTTAAATACATTCTATGTTAATGTTCAAC # Left flank : GTTAGTGTTCAACTGTTTCAGTTAGTACAAACTCATCATCTTCATCTGCGTTTAAATACATTCTATGTTAGTGTTCAACTACAAGAAAGACCAATGAAGCCGCAAGGGTAGAAGCGTTTAAATACATTCTATGTTAGTGTTCAACGAATAAAGGTGTTGCAGATGAACGCCTTACTAATAGGTTTAAATACATTCTATGTTAGTGTTCAACCATTGCAAAATAGCCATTTTAACTTATTAGCTTTTTACGAAAATCTAGTCATTTCAACAAGTACATCATAATTTTACCAGTGTTTTTCAATTTTTTAAAGTGCTTAAACAAAACAGGTCTTAAACCCACTTATTTCAATACTTAGATTATATTCTCACTCTCTTCTTCACTGGTAAAATAATTAACACTAGAGCAGTTAAATTCTAATAATATTTAATTTCCTATTAATAGACTACTATTTTAATATTCTCAACTCAAATGCTTGAAACTGCTAAGAAAAAAGTTATAT # Right flank : CCATTTTAACTTATTAGATCTTTATGAAAACTTAGATATTTCAAATAGAGCTATTTTAATAGATATATTTTAATATTACCAGTATTTTATATTTTTTAAAAGTGTTTAGGTTATTATATAAATTAAGTTATAAAAAATAGATAGATCAAGGGGATCTACCTATTCTTCTTATATTTATTGATGTTTTTGTAGTTTGCTAAAGTTATTTAGATAAATTTTGGTAGACATTTTATAAATATATATTTTACCTCTTATCCCAAATTAATCTTAGTCTATTTCCCTACAGCTTAAAACCCAACAATTAAGTAATCTAACAGTCTGATATGTCTTTTTAATCTCATATTTTCTTCCATCAATCATGGCAATTACAGGTGAAGTTCTTTTAATAAATTCAAAGGCCAAGCCATCTTTTCCACAGTATTTTGCAACTTCTAAGCAAATATCCTCATCTGTTTTAGGTTCAACATCTAAGTCAATTAAAAAGCCTTTTTTAAACATAA # Questionable array : NO Score: 3.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.47, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATTCTATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 7866-8683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHJ010000022.1 Clostridium perfringens strain 1805-92 NODE_22_length_39990_cov_76.7934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7866 30 100.0 36 .............................. CTATTAGTAAGGCGTTCATCTGCAACACCTTTATTC 7932 30 100.0 36 .............................. GCTTCTACCCTTGCGGCTTCATTGGTCTTTCTTGTA 7998 30 100.0 36 .............................. GCAGATGAAGATGATGAGTTTGTACTAACTGAAACA 8064 30 100.0 35 .............................. GTTAGAGCTGCGTTGACACAACTATTTAATGCTAT 8129 30 96.7 36 ....................A......... TAATGAAAACCTCCTTTCCACCATAATAAATTTTAA 8195 30 96.7 37 .............................T CAGGATTTAATGTATTATCAATAACTTGCTTATTAAC 8262 30 96.7 36 ......................C....... ATAAAATACTGATAACCAATACCACACCAACCCTTG 8328 30 96.7 34 ........T..................... TCTTGAACTAATTTCATACCTAATCTTTTTCTTA 8392 30 93.3 36 ................AG............ AAGTTAACTCCAAAAATTGCTTTTTTAACAGATTCA 8458 30 90.0 36 ............T...AG............ GTTTTACTATTACAAACGGTTACTGTAGCCCCTTTA 8524 30 86.7 36 ........A......TAT............ ATTATTAATGCAGAGCTGTTATCCAGATATGACATA 8590 30 100.0 34 .............................. TTATCTAATCCTCAAACTTTCATTTTCTTTTAAG 8654 30 80.0 0 ........A......TC...T..C....T. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 95.1 36 GTTGAACACTAACATAGAATGTATTTAAAC # Left flank : TGTATTTAAACACGCTTGATAGTGATATACAAAGTTTAAATTCTAATGTTGAACACTAACATAAGATGTATTTAAACAGTCATCGAAATGTGCAATCACTTCTTGTTCTTTACGTTGAACAACTAACATAAGATGTATTTAAACTCCATTTTAATGGATTACCCTTTATATCTTTACCACAGTTGAACAATAACATGATATGTATATAAACATATAACTTTTTTCTTAGCAGTTTCAAGCATTTGAGTTGAGAATATTAAAATAGTAGTCTATTAATAGGAAATTAAATATTATTAGAATTTAACTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATAATCTAAGTATTGAAATAAGTGGGTTTAAGACCTGTTTTGTTTAAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATGATGTACTTGTTGAAATGACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTGCAATG # Right flank : CCTAAAGACTACGTAAAAAAATATTTTACGTAGTCTTTTATTTTTTACCTTAACAGAGCTCTTTATCTAAAACCTTTTACATTTAATTTCACTTAAATTTAACCTAAGGTTTGTCCCTCTCTTTTTTTAGATTAATTTTTTATAGAAGATTAGTAAGGTTGCTTGGTAAAATAAAGGATTTAAAGTATTATTTTAACAAAATATGAATTTATGGTAAAATATTATTGCGAATAAAAAATAGAAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAGTTAGGTAAAAAACAAACATATATTTTTAATAGTAACAAGCTTAAGGATGCCATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGAGTATTATAATGATCTTTTAAAGGAAAAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAGAGCAAGGATGAGGGGAGGGAGTTCATTAAAAACTTAAGTTTTCATATTTTAAAGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACACTAACATAGAATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //