Array 1 488544-489159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 488544 36 100.0 37 .................................... ATTCTAAACCACCTGCAACAGTAAAGTTAAAATAGTT 488617 36 100.0 37 .................................... CTTGCAACCTGACGCGCAATTTCGCGCATCAAATTTT 488690 36 100.0 35 .................................... AGTACCCTCTTAGTGCCAAGAGAGGGGGGATTTTT 488761 36 100.0 35 .................................... TCCCCATTGTTTTGGGGATACTGGCATTCATAACG 488832 36 100.0 40 .................................... CGCGCGGTTAGATTTTGTTTCAAATCTTTCGGCGCGTATA 488908 36 100.0 35 .................................... TTGTTCAACTTGGCATAACCAAAAATTTGATTATG 488979 36 97.2 37 ...A................................ AGTTAAGGATAGTTTTGCTACTTTTAGAATTTGGATA 489052 36 100.0 36 .................................... TTTTAGTAGCCTTTTGTCCTCTTCAAACAAATATTT 489124 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.7 37 CTTGCTTCCCTTCGGGGAAGTAGATTAAATGGAAAC # Left flank : TATCATCCCCAACCGCCGAGCTGGTTTTGGCAGGGCTATAGCTTTGCCCCAGAGTATCAAGATCAGGTGGTCTATCGCTGGCTGACAGATCCGGCCGCTTGGAATGCCGATATTCCCCAACTCTTGCGGGAGGGACGTGTACAGGAAGTTTTTGCCCTACTGTCGGATACGTGGACTAGTCTGGGCTACGGCCTTGAAAGCAACCTGATCACACCCCACCTCGAAGAGATTTACCAGCAACTGTTGGCTCAAGAATTAGCCGCCTCCCAGACTGCACACTCTCCGGGGAGGGATGCGTTACGCTAGTCAATTTTCTCTGCCGACGGATCTATTCGAGTGCCCCAATTTCTGATTCTTGCGTAGAATCCCTCGGAGTCGCTCTAGAAGAGGGTTTGAGTATTTTCAGTGGCCTCGTAGAAAATGATTTGACACCCCTCGCAGGGGATCCCTCGGAACAGGGGGTTGCAATCCGCTCAGGGAGAGGCTATATTGAAGATGCT # Right flank : CAACAAGAACAGAGAAATACTGTCATCAAAAACAGGCTGAGTACTCAGTTTTTTGAAGGGGGGTGTTGAATTCTATTTTTTCTGCACCCCTAATTTTTTTGTCGCAAGAAGTGTCAAGGCCGAGCTGTCAGTTCCATCCGTGAGCAAAGGGCTGTACCGCTCCCGGAGAGATTAAAATCAGAAAAACCCTCTGGTGCAAATCGGCTGGCCTTGGTGGATGTCTATGTCGTTTCTTGAGTATCTCCATGCAGAACCGCGGCGCGTCATTGTCTTTGATGGCGCAATGGGCACGAATCTTCAGGCGCAAAACCTGACGGCAGAGGACTTTGGGGGCAAGGCGTACGAAGGCTGCAATGAATACTTGGTCATCAGCAAGCCAGAGGCGGTGGCCAAGGTGCATCGGGACTTTTTGGCAGCAGGCGCCGATGTCATTGAAACAAATACCTTTGGAGCCTCCTCCGTTGTTCTCAGTGAATACAATTTGGGCGATCGCGCCTACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCCTTCGGGGAAGTAGATTAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 502972-496478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 502971 36 100.0 34 .................................... CTGGATTGTGATAAAATCTAACTTAGAAAGCGGT 502901 36 100.0 35 .................................... GTTGGTTTCCAAGCCTTGGGCAGTTCCCCGTTATG 502830 36 100.0 36 .................................... GCCTTCAGAGCGGGCAGTGGCCTTCAGCTGTGGCCT 502758 36 100.0 37 .................................... GAACCTGAAAGACGCAAAACCGCTGCGCTGAACGCCT 502685 36 100.0 37 .................................... ACAGTCCACCACCAAAGAGTGGTCTCTGTAATAGGAG 502612 36 100.0 34 .................................... ATTACAAAGCTATCGCTTAAGAAACCTAGTATAG 502542 36 100.0 35 .................................... TAACCAAGCCCTCGAAGAGGTTTCTCGATCACGGT 502471 36 100.0 36 .................................... AGTTAAATTAACAAACTAGGCTATTATGCCTAGTTT 502399 36 100.0 34 .................................... TCCCCCTCTGAAGGCCACTGTCCCCTCTCAAGGC 502329 36 100.0 34 .................................... TCCCAAGACTCAAGTGAGCTGTTCTTTCTGTTAG 502259 36 100.0 37 .................................... ACTTTCAGCGGGTGATTGAAATTTCTTTTTTGTCTAA 502186 36 100.0 32 .................................... TTAGGACGCATACACTACCTGCAAAACCAATT 502118 36 100.0 33 .................................... TTGGGTACAGATCCCAACACCCTTTTTCTCTTA 502049 36 100.0 36 .................................... GAAAAAAGACTTAAAAAGAATTGGTCTCGGCGCAGG 501977 36 100.0 33 .................................... GTTGCTCTTGCAGGATCCCATTTTGGGTTACTG 501908 36 100.0 32 .................................... TGGCCTTAGGGAAAGTCGTGGCCTTGGCCGTG 501840 36 100.0 35 .................................... TCGGGAATTTTCTTTCAAAGAAAATTCCCTTATAG 501769 36 100.0 35 .................................... CTTATGATACTCAAATTAGCGCTGTTCGAGAATTA 501698 36 100.0 37 .................................... TAGGAATGCGAAGAAATAACGCAAGAGGTGCTTTTGG 501625 36 100.0 38 .................................... GGGCGGCCTCACAAAACCCCAAAAAGACTTAGTCCTGT 501551 36 100.0 36 .................................... ATTTTTTAATGCCTGAATTTTATCAAAGCTTTTATA 501479 36 100.0 34 .................................... GCCTTCTTAAGTAGTCGTGGGGGCAGTGGCCTTC 501409 36 100.0 37 .................................... AACAACCGGAAAGCAGTACGGCTGAACAAACTCGCAA 501336 36 100.0 37 .................................... TATTCTTTACTGACTCAGTTAAATCAGATGGCAGCTT 501263 36 100.0 35 .................................... TCCATAGGAGTTAATTTTGGACATGTTAATGTTGA 501192 36 100.0 34 .................................... GCTGCATCGGTTGCTGCACCAGCCTTACGTGTTA 501122 36 100.0 35 .................................... TATCCATCGCCTTTCAATTTTGAAAGGCGTTTGAC 501051 36 100.0 35 .................................... TAGAGCGTCCTTACATAGATCAAACAGTATTTTTA 500980 36 100.0 36 .................................... GCTGAGTTAATGTTTGGTATAGCCTAGAATAGGCGT 500908 36 100.0 37 .................................... GGCTATTGCAGGAATAGCTCCTGCAGCAGGGTTTTGG 500835 36 100.0 34 .................................... ACATAGAGGCGGCCGACTAACAATAAACGGCACA 500765 36 100.0 37 .................................... ACCCTATAAGTCCAGCAGCAGTTAATCCAGCGCCTAG 500692 36 100.0 35 .................................... TCAATTTTTACGCGGAATTTTTGCGATTCCGTGTG 500621 36 100.0 35 .................................... TTGGCAGTTAAAAGTGTGCGAGCTTATAACTGCTT 500550 36 100.0 35 .................................... TTTGCTTGGGCTCAACGCCCTGTTCCAACCATTGG 500479 36 100.0 38 .................................... TGGGGCAGAGCTGACCGATTTCCTGATTTTGCCCCTAA 500405 36 100.0 34 .................................... GGGGCGGCCTTAGGAGTTTAGGAGTCGTGGGGGC 500335 36 100.0 36 .................................... TCATCGCCCCCATAATCATTGACTGCCTGATTACAA 500263 36 100.0 33 .................................... AATATGAATAAAACGATTTGCCAGCGCACTTGT 500194 36 100.0 36 .................................... ACGCCTTCTGCCCCGACCGCCTTCTGCCCCGACCGC 500122 36 100.0 35 .................................... GTTTGCAGCACAAAATCCATCGGCACAGGAAAGTT 500051 36 100.0 34 .................................... GTCTACTGCGACAAACTTTTCACTGCACAGGATT 499981 36 100.0 33 .................................... ACTGCCCCTAAGGCCACGACTGCCCCTAAGGCC 499912 36 100.0 40 .................................... ACGCCCTTGACGGCCTGACTGCCTTCTGCCCCGACTGCCT 499836 36 100.0 34 .................................... TATGGCAAGAGGCCAGCTGATGCTGTTTCGGCAT 499766 36 100.0 32 .................................... TGGCACTTCGACCGCAAGATGGCATCAAGAAA 499698 36 100.0 35 .................................... TAAAAATTCCGCGCGATAAAAATTCCGCGCGGTAA 499627 36 100.0 35 .................................... ACCTCAGACCCTAATACCCTGTTTCTTTTATTAGA 499556 36 100.0 32 .................................... ACTTAGTGGCAGATTTTAAGACATGGACAAAA 499488 36 100.0 36 .................................... CCCAAGAGGGGCGAGAAGGTTGCCCAAGAAGGCCGC 499416 36 100.0 34 .................................... TATGGCAAGAGGCCAGCTGATGCTGTTTCGGCAT 499346 36 100.0 32 .................................... TGGCACTTCGACCGCAAGATGGCATCAAGAAA 499278 36 100.0 35 .................................... TAAAAATTCCGCGCGATAAAAATTCCGCGCGGTAA 499207 36 100.0 35 .................................... ACCTCAGACCCTAATACCCTGTTTCTTTTATTAGA 499136 36 100.0 32 .................................... ACTTAGTGGCAGATTTTAAGACATGGACAAAA 499068 36 100.0 36 .................................... CCCAAGAGGGGCGAGAAGGTTGCCCAAGAAGGCCGC 498996 36 100.0 34 .................................... TATGGCAAGAGGCCAGCTGATGCTGTTTCGGCAT 498926 36 100.0 32 .................................... TGGCACTTCGACCGCAAGATGGCATCAAGAAA 498858 36 100.0 35 .................................... TAAAAATTCCGCGCGATAAAAATTCCGCGCGGTAA 498787 36 100.0 35 .................................... ACCTCAGACCCTAATACCCTGTTTCTTTTATTAGA 498716 36 100.0 32 .................................... ACTTAGTGGCAGATTTTAAGACATGGACAAAA 498648 36 100.0 36 .................................... CCCAAGAGGGGCGAGAAGGTTGCCCAAGAAGGCCGC 498576 36 100.0 34 .................................... TATGGCAAGAGGCCAGCTGATGCTGTTTCGGCAT 498506 36 100.0 32 .................................... TGGCACTTCGACCGCAAGATGGCATCAAGAAA 498438 36 100.0 35 .................................... TAAAAATTCCGCGCGATAAAAATTCCGCGCGGTAA 498367 36 100.0 35 .................................... ACCTCAGACCCTAATACCCTGTTTCTTTTATTAGA 498296 36 100.0 32 .................................... ACTTAGTGGCAGATTTTAAGACATGGACAAAA 498228 36 100.0 36 .................................... CCCAAGAGGGGCGAGAAGGTTGCCCAAGAAGGCCGC 498156 36 100.0 34 .................................... TCTTGGTTTTGCACCTGCCAATCGTTGAAACAGT 498086 36 100.0 37 .................................... GAACAGAGTCTTTATATTTTCGTTCTCTAATAAGTGA 498013 36 100.0 34 .................................... TTGAAGATGAGAAAAGGCATGATGTGGCGCTAAA 497943 36 100.0 36 .................................... TTAGGGGCAAAATCAGGGAATCGGTCAGCTCTGCCC 497871 36 100.0 35 .................................... TTCTCGCCCTTCTTGCTCGCCCTTCTTGGGCAGTC 497800 36 100.0 36 .................................... TATGCTGGACAGTCAATAAAACTTTCTTCAGCAGTG 497728 36 100.0 33 .................................... TTAATCACAATAAATCGTTACTTAAATATTCAA 497659 36 100.0 35 .................................... GGAAGCGGCAACACGCTGATACTGTTTCGGTATCA 497588 36 100.0 39 .................................... CCAGCAAAGGCGGCCAGCAAAGGCGGCCAGCAAAGGCGG 497513 36 100.0 36 .................................... TACGCGAAGCGCTTAGAAGCAGTAGGTACTGCTTCT 497441 36 100.0 37 .................................... TATGGTGCACGTGATAGTGCACAGCCAGTATCAGCGG 497368 36 100.0 39 .................................... GAGCTATACCGACTTCAAACGTTTAGTAGCACAAAATTT 497293 36 100.0 35 .................................... GCAAAAAATGAGCGCCTAAATGTAGATAAACGTGT 497222 36 100.0 35 .................................... TTTTTAATTTAGACTTATTAAAAAATAATACGCGT 497151 36 100.0 35 .................................... ACTTTACGAGACAGGGTTTTGTCTTTCGTAACCAC 497080 36 100.0 33 .................................... CTCAAGAGGGTTTTTTGCCCTCTTGGCTTGCTC 497011 36 100.0 34 .................................... TTGCACAAATTGTTAACAGCTGGTTTACCTGAAT 496941 36 100.0 37 .................................... GTGAAGGAAGTTAATACCGTTGCTTCTGTGATTAGTT 496868 36 100.0 34 .................................... TGGATGCAAATGATGAATTCTACAGGTTTGGGGC 496798 36 100.0 35 .................................... ATCTCCTTGCACAACAGGGATTTGGTTTTGTTCAA 496727 36 100.0 36 .................................... TTGAACTAGGAGAGGTTTTTGGGGATTTTGTTTTAC 496655 36 100.0 37 .................................... TACAAGAAATGAAATGTTGCAGCCAACAGTTAACTGT 496582 36 100.0 33 .................................... CTTGCAAGGGTTAACGGCGATGCGGGATGGGAT 496513 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 92 36 100.0 35 GTGCCTCTACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TTCAACTCTACTGCGGACTGTCCCAGCAGCGCCATAGTGTTCAACCGCTTCACTTCCCCTTGATCCTAACAAACTGCCAACCTGCTCTTTTCTGGAATAGGGGCACAAGAAAGAACGCTGAGGCGCTGGGACAATTGCTTTGCAGTTTTGCTAAGAGCAGTTAATCTTTCTCTTGCTGACGGGTCAGCAGCACTAAAATTTGCGAGACCCCAGAGAATGCCAGCTGAGTTTTGTCCAAGATTGTGGCGCATGCAAGCACCTCTGGATTCAAATATTCTCTGATACGGCTGATATTCAAAGATAGCCCCTTGACTTGGTTTGAGAGTTTTTGTTAGATTTAGAGGTGCTTGAAAATCTCTGAACCTATTCCCCAGAGCGGGATTGACAACTGAATACTGGCCGAGGCTAAAAATTTTACAGTCACAAAAAAACCAAGTGCCAGAGGTGCTTGAAAAGTGACTGTGCTAAGCTAGTCCTAGAGGCATTTCTAGGGCGCCGCT # Right flank : TGGATTCGCTCGGCAGCAGGGGCGGGAACTCGCATCACCCTTGATTTGCCGATGCCGTCAACAGTTGTTGCAGGTAGGTCTGCGCAGGGGAATAGTCAGGGTTAAATTCAAGGGTCTTTTGAAAATAGGCGATGGCGCGATCGCGCTCCTGAAGGGTCATGTAGGTAAAACCTAGACTATAGGCAGGTTGGGTGGTCATCCACTGGCGATCGAAGGGTTCAGCGCGATCGTAGGTTCCCTGCTCAAAGAGTTCTAAACAGCGGTGAAAGTAGGGCAAGGCTCCGCGATGCAAGCCCAATTCAAAGATGAGTAACCCCGCCACATAGAGTAGGGGCGGATAGCGATCAAAGAAGCGTAGGCCATAGCTGAGGTAATACTGAGCCGTTTCGTAGTCCTTGGCCTCAAAGGCACGGTAGCTCACCCAAAAAAGAAGATGGCGCAGCCAAGTCGTCTCCTGAGGCAGAATTCCCTGTGCCACGGCAGGGGCAATTTGCTCAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTCTACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1055311-1058908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1055311 36 100.0 36 .................................... AATCCATTCAAACGGGAGTAGATTCAGGATTACTTT 1055383 36 100.0 34 .................................... TTTTTGTTCTTCGCGACTTTTACCAAACCCTAGA 1055453 36 100.0 33 .................................... CTTTAGATTTTACTTACAGCCCGACACTTAACG 1055522 36 100.0 36 .................................... TAGGTGGCCTCATAAATATATTTTTTGAGACCTGTT 1055594 36 100.0 37 .................................... TACGGGAAACGCCTAGAAGCAGCACCTATTGCTTCTG 1055667 36 100.0 36 .................................... ACGGTGGGGAGAAAATCATGGGTACACCATCGCCAA 1055739 36 100.0 37 .................................... TTCAGAACTAGGGGTGTTAGGATTAGGAAAATTAGGC 1055812 36 100.0 36 .................................... ACTGGCCAGCCCCCCTACTGGCCGCCCGTAGTCTTG 1055884 36 100.0 34 .................................... TTTTAGGGGGTAACTTTTTTGTGGCGAAGCTATC 1055954 36 100.0 35 .................................... ACTATCTAGAGCCTCTGTAATTAGTATGCCCTACA 1056025 36 100.0 32 .................................... ACGAAGGATGACGGCCGAGCCGCCCAAGACGG 1056093 36 100.0 34 .................................... TAAACGGTCTTTATGTTGGTGTTTCAAAATAAAA 1056163 36 100.0 35 .................................... TGGTGGTTTTCAATTTACCAGAGGAATTTGCGTGG 1056234 36 100.0 35 .................................... GAACTCGCATTCTTATTCATAAAGCTACTGATTAT 1056305 36 100.0 35 .................................... TCCAACAAGCAAAAGCGCCTCGACGCTCTCCTTTG 1056376 36 100.0 36 .................................... ACGCTGCTGAAGCGCAGCGCATTGGTTTAAATAGTC 1056448 36 100.0 35 .................................... GCAGTCGGTTAGGAATAGCGTTCAAAGGAGAGCGT 1056519 36 100.0 33 .................................... TCGTTACTTCTGAGTGGCCAGCCAATGCAACAT 1056588 36 100.0 34 .................................... AGGGCGGAAGGCCTTAGAGCGGAAGGCCTTAGAG 1056658 36 100.0 35 .................................... AATCTGATAATTTACGACGAGCTTGATGAATAATA 1056729 36 100.0 35 .................................... GGTAGCCGTGGGCAGTCGTGACCTTCTTAGGTAGT 1056800 36 100.0 34 .................................... TCTCGAACAGACTCAACAGGTCTAGTCCCTGTCT 1056870 36 100.0 36 .................................... AAGGCCGACCCATGAAGGCCACGATTGCCCATGAAG 1056942 36 100.0 36 .................................... TATGGCAAGCGTGAAGCAGTATCGACTGCTTCACCA 1057014 36 100.0 34 .................................... AAGATTTCCGTGCCCTCACGGAATACGTTATGGA 1057084 36 100.0 35 .................................... AACCCATTGCTTTGGAGTTTTATACCAAAGACAAA 1057155 36 100.0 34 .................................... CAAGAGATCTCGTTCTCCGAGATGTACGGCAAGC 1057225 36 100.0 35 .................................... CAAGCCGCCCAAGAAGGCCAAGAAGGCAAGGCCAA 1057296 36 100.0 37 .................................... CAGCACCACTTTTCTTTTTACCTTGCAGCACCTTTTT 1057369 36 100.0 34 .................................... AACTTTCGTTTTTTGACATGTACGGCAAGAGGTC 1057439 36 100.0 34 .................................... TATCATCTGCAGGAAGATCAATTACAGATCTCAT 1057509 36 100.0 36 .................................... ATAAATCTCGAGAGTTTCATTCCCTTTGATTTTTTG 1057581 36 100.0 36 .................................... ACCTTAGGTAGGTCATTACCCGCAACTGGTGAAGCA 1057653 36 100.0 37 .................................... ACCTTAGGTAGGTCATTATTGGCGGGTACAGAAGCAG 1057726 36 100.0 34 .................................... TTCTGCACATTTATACAATTGACCAAGATAGATT 1057796 36 100.0 36 .................................... ACGAAACAGGATTTCGTAGTCCTAGTGGACTATGTC 1057868 36 100.0 39 .................................... ATCCACAGACTGAATATGCAAGGGATCCTTCCTTCCCAC 1057943 36 100.0 37 .................................... AGGGATGGGCAGCAACATCGGCTGCTAAGGCCGCCCA 1058016 36 100.0 36 .................................... AGATGGAAGACCACTATGATATCTATGAAGACGCAG 1058088 36 100.0 35 .................................... ACGCCCCAGACTGCCCAAGAAGGATGACGCCCCAG 1058159 36 100.0 37 .................................... GGGCCTCAATGGCGGTAACATTTGGGTTCAAGTGGTT 1058232 36 100.0 38 .................................... TTAAGGAAGGCGAGAGAAGGCTAGGGAAGGCGAGAGAA 1058306 36 100.0 34 .................................... GAATAAAAAGGTGTATTATAAACAATTGGTAAAT 1058376 36 100.0 36 .................................... GCTAGGCTCCTGACTTTATCTCAAGCTGAGCTGCTT 1058448 36 100.0 35 .................................... AGCTTAGCGATAGCGGTGTTGTGGAGACGCTATTT 1058519 36 100.0 33 .................................... ACGGCGGGGCGGCCTTAGGGCAGTTTTAGGGAC 1058588 36 100.0 33 .................................... ACGGCGGGGCGGCCTTAGGGCAGTTTTAGGGAC 1058657 36 100.0 36 .................................... ATCAAGGTCAGTCGCAAGATATTTCCAATGCATCTG 1058729 36 100.0 36 .................................... TTTCAGCTAAAAGCTTAAAAGTTTGAGTTTCGGAGT 1058801 36 100.0 36 .................................... TAAGAATCTTAAAGATGTGGTGGGAGGATATTTATT 1058873 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 51 36 100.0 35 GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : ACCCCAAGCGCTGGCGACAGGCTTATAAGCAGTTAGAGGGCTATGGTGAACGATTACAGTTCTCGATTTTTCGCTGTCGTCTCACGCCACGGGAGCGGGAAAAGCTGCGCTGGCAACTGGAAAAAATCCTCACCAAGGAAGACAGTCTCCTAATCGTAGGATTGTGCAGCCAATGCGTCGAGCGGGTATGCGCTTGCAACCGAGCGGGGACATGGCCAATGTCGGAGCAGAACTTCAAAATCTTTTAGCATGCAAGCACCTCTGGACTCAAATATTCTCCGAACGCACTGATATTCAAATACAGCCCCTTGACTAGGTTTGAGAGTTTTTGTTAGATTTAGAGGTGCTTGAAAATCTCTGAACCTATTCCCCAGAGCGGGATCGACAACTGAATACTGACCGAGGCTAAAAATTTTACAGTCACAAAAAAACGAAGTGCCTGAGGTGCTTGAAAAGTGACTGTGCTAAGCTAGTCCTAGAGGCATTTCTAGGGCGCCGCT # Right flank : CTTTTGCCAGAGGACGTTGTGGACAAGATTAATAGTGCCTCTACTCCTAGCGCTGTGGGCTAGCCCAGTGGTTGGTTAACTTTCTTGAATAAAAATAAAAATTTGTATCCAAAAGCTTTTTTGCTCCTTGTGGTTACCTACAGTAGAAGTTAAAATTTTTGTAAGTTGACAACTATAAGCCATCCATTAGCATGATTCTTGAAACTAGACAGTGGCTACCCTTGGCAGTGCTCCAGAGACCCATAGTTGAGGGAAAGCATTCAGATTAGGCGGGGATAATAAGATAGCGTTATGACTAGCCACAATCACTTTCTTGAAATCCATTACAGCTTGCGTGGAAGAACACTGCCAGCAGATCATGGCTATGCATTGTACTCTGCTATTAAAAAACAGTTGCAACAATTGGGGCGGCCAGATCTACCTTCAGATATACCAAGTGATCTTCGCCTTAGCAGTATTGCTGGGATTCCTAACGGTGAGGGAATGATTTATCTAAATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 1323483-1325652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1323483 36 100.0 33 .................................... GACTCATTAAAGAGTCGTATAAAGTTTTGGTTA 1323552 36 100.0 35 .................................... AACAAACGGCGCAAACTAATTTACAAATTATGGAT 1323623 36 100.0 34 .................................... CCCCGACCGCCTTCTGCGAAGGACAAGAAGGACA 1323693 36 100.0 34 .................................... TTGTTTTCTAAATTCTGCAGTTGACGCATTAAAG 1323763 36 100.0 37 .................................... ACACTAAGGCCACGACTAAGGCCGCCTCTGCCCACGA 1323836 36 100.0 34 .................................... ACGCAAAGAAACATAGGTAGTGGTCTCTTCTTGT 1323906 36 100.0 35 .................................... GATTTTGTGCTGCAAACCAATGTTCAAGAACGTCA 1323977 36 100.0 34 .................................... TTTGTAATGTTCTGTGGAAAAATTCTCTCCTCAA 1324047 36 100.0 37 .................................... TTTGCAAAAAGCTTATTATAGACTGCAGGGGGCAACC 1324120 36 100.0 34 .................................... TTCAGCAACCTGAGGTGTAATAAACTGCTGTAGT 1324190 36 100.0 35 .................................... TAAAGGTTCCCCTGAGGATCAAACACCATAGATCC 1324261 36 100.0 34 .................................... GAAGATCGGGATTTGGAATTCATTTGGATGCAAA 1324331 36 100.0 39 .................................... GTAAACATGGCGAACTCCTATCGCGTTGACAACTCTAGT 1324406 36 100.0 36 .................................... TCTTCTGGAAACAAATATTTTTTGACTAACATGGAT 1324478 36 100.0 37 .................................... TTGTCAGCAGGGTTTACAAATGCAGCAGATGCAGCTA 1324551 36 100.0 34 .................................... GAAAAACAAAAGCTTGAAATTTATCAGTCAGAAG 1324621 36 100.0 37 .................................... GTTAATCCAACGCCTAGCCCCATGCCGCCTAACACGC 1324694 36 100.0 35 .................................... ATTTGGCCAGCTAAACCATTCTATCCCGTTTTTAG 1324765 36 100.0 36 .................................... GTGGTATTTTGTATAAAATGCACCGACAATAAGGAT 1324837 36 100.0 34 .................................... GAAAAAGCATGGGTTAATTTATGTGCATTTGGTT 1324907 36 100.0 35 .................................... GCCTAGTTTATTAACTTAATTATTAATTTTTACTT 1324978 36 100.0 37 .................................... TTTTATGGAGCATGGTCTTTTAGTTTTAGCCCAAAGA 1325051 36 100.0 37 .................................... TAGTCCCACTCAGGAGAAATAGAGTCTAGTACTAGAG 1325124 36 100.0 33 .................................... GATAGTGGCGCGGCTCATAAGGCCGCCCAATCC 1325193 36 100.0 35 .................................... GCCTAGTTTATTAACTTAATTATTAATTTTTACTT 1325264 36 100.0 36 .................................... GACTTATGTGTAGCATAATGTTCCTCCTTTCGGTTA 1325336 36 100.0 36 .................................... TTTGCAGGGTTTGCCGCCTTAACAAAAGGAAAATCT 1325408 36 100.0 34 .................................... GAAAGTGTTACAAACAGGCGGGTTGACGTGGACA 1325478 36 100.0 33 .................................... TACAATGTTCGTTTACTGCCAATATTGAGATAA 1325547 36 100.0 34 .................................... TTTAGGAGAATGGTGGATTGAGTTAACGCCAATT 1325617 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 31 36 100.0 35 GTGCTGGGATTCTTTCCCAGCCGAATTAATGGAAAC # Left flank : TTTTCCCGCTCCATTGGGGCCAATGACCGCCACTAGCTCGCCGGCTTCGAGACGAAAATTAACGCCCCGTAGAATATCCACATCGGGAATATAGCCAGCATAGACATCAGCAACGTGGAGCAAGCTCATGGTGCAAAGGACATCGCCAGAGGTTCAACATCCTCAGTATAGAGGTTTCGCGCTGTGTCCCTAATTTTGCTCCTGAAGGCAAAAGATTGCTGTTGTGAATTGAGATCCTTGAGGACTTGATCAAGCACCTCTGGACAAAAATATCCTCTCAGCTCGGCAATTTTCTCAAACCCAGTCTCCACAACGCTTTGAGCAATTTCTAACAGATTTGGAGGTGCTTGAATTTTCCCGAAATTCAGTTCCAGAGTGACTTTCACGTCCTGTGACCCTACGGATCTAAAAATTTTACAAAAACAAAAAAATGATCTCGTCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCGTAGAGCACCTTCTAGGAGGGTGCC # Right flank : CACTTCCTCCTAAAAGGGGGCTTCAGGGGGGGAGATCAGTGCCTGAACCTGAGGTGGCAAGCAAGGTCGCGGAACCAGTAACAAGCATCCCTGACCTTTAGGGCGGGCAGTGTGTCAAAATTGGTGTTAAGTCGTGCACCCAGCGGAGTCAACGGAAACGCAGCAACAATGAAAGCCGTTGCCATCACAGAATTTGGTGACCCCGATGTTTTAGCGCTGCGGGAGATGCCTGAGCCGCAGATTCAAGCTGCCAATGAGGTGAAAATTCAACTGCGGGCGGCCAGTGTGAACCCCATTGATACAAAGCTGCGACAGCGGGGAACATTTTTTCCCGATCGCCGGCCCGCCATTCTCGGCTGTGATGGCGCAGGGGTGGTCGTGGCTGTGGGTGCAGCGGTGCAGCGGTTTCGCGTAGGGGATGAAGTTTATTTTTGCTATGGGGGCTTGGGCGATCGCGGCGGCTGCTATGCCGAATACACCGTTGTTCCTGAAGTTGCCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGGGATTCTTTCCCAGCCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 1854108-1854285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1854108 37 100.0 34 ..................................... CCCTTATTTGGCGGCACAAACGGAGGTAAAGGCA 1854179 37 100.0 33 ..................................... TCGCCCCAGTTTGCAAAATACTGCCTTAGTGAG 1854249 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTGCGATCGCCCTTCGGGGCGATCGAGGATTGAAAC # Left flank : ACGTTCTGAAGCCGATTCGTCATTTTTCAATTACCCGCAATGAGGTCAACTCTCTGCAAAGCGATCGCGCCGCCCGTCAAGAGAGCTACCGCTATTTTGCTGATGAAGATCGTGCCCAGCGCCATACCCTAGCACTGCGGGATGTGGCCTATGTGATCAAGGCTCAGATTGTTCTACGTCCCCATGTCAATGCTGACATTGCCAAGTACTGTGAGCAGTTTCGCCGTCGGGTCAGGAAGGGGCAATGCCACCACCAGCCTTACCTAGGTACTCGTGAATTTAGTGCCTTCTTTGAGGAACCTACGCCAGCGGATCAGCCGATTGCCCACAGTGATGATTTGGGGTGGATGTTGCTGGATGTCGTCTATGAGCAGGATACCAAGGTAAAGACCCTCAGCTACTGGCGCCACGATGGCAATGGCGCCCATTTAACTACTGGGAAAGCAGAGCCAAAGTTTTTCCATGCGCGATTGATTAATGGTGTCTCAAGGGTGTCCCAA # Right flank : CGACACTCACAGCATCAAAGCGATCGTCCCCGGGACGATATGACAGGATTTCTAAACCAATTGGCTCCCCAGTCACCCCATCCTTGAACAAAATCACCCCATCTCCAAGTTCTGTCGCAACTTGGTTTCTTCGTGGAACTTGCCAGAATACACTTAACAGCTCTGTTTCTGGCTCATAAAATACTCTTATTTGAGCCACACTCTCTCCCCTTCTTTAATGGCATCAGTTTGATAAGCAGTGATTAAAAAACCATCTCCATTTAAGCGTCGTGCCACTGCAACAACCCAACGTTTTTCTCGCTGTACCCGATAAAACAATAATACTCCTGAATCTCGGCTACTGCGACGAACCTCATCTGGTGTAGAAAGAGCCAACCGCACACAATCTTCCAACTCCTCAATATCAGGGTGCTTGATGAGCAGCCGTTGCCAATACTCCTCAGAGGTTCTAACCGTAAATCCAAGCGGTGTAGAAATTTCAAATTTCATGAAACTACTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCGCCCTTCGGGGCGATCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.00,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 6 2101440-2103405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070960.1 Thermosynechococcus sp. TA-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2101440 36 100.0 36 .................................... CAACCCTGTTTTTCTTTTTTCTATTCATTTTATGAC 2101512 36 100.0 34 .................................... ACTAGCTAAATAATTGTCTGTGTATTGACGAGCA 2101582 36 100.0 36 .................................... ATCGCGGCAAAAGATCATAGTCCGCGATTACTACTC 2101654 36 100.0 34 .................................... TCGAGCAGAAAATCGATATATATATCTTTGAGCC 2101724 36 100.0 42 .................................... TTGGGCAACTCAAAAAAGTTTTTGCCATATCTGATCGTGCGA 2101802 36 100.0 35 .................................... AAAGTGGTCTTGTTCAATGCGGCATAACCAAAAAT 2101873 36 100.0 36 .................................... CCACCGCTGAAGTTAAAGGCCTCAGCGGGGAAATTT 2101945 36 100.0 35 .................................... AAACGGTTTGCCAGCGCACTTGTTAATGCGCTCAC 2102016 36 100.0 36 .................................... TCTATCTTCTGGAAATAAATATTTGTTAATTGACAT 2102088 36 100.0 35 .................................... TTTTTTAAGACCCGTCTTTAAGAATGCTGGAATGA 2102159 36 100.0 35 .................................... TTTTTTAAGACCCGTCTTTAAGAATGCTGGAATGA 2102230 36 100.0 35 .................................... CACGTATCAGGGTCTATTTCTCCTGAAACGCTTAA 2102301 36 100.0 34 .................................... CTGTAAGTAAAATCTAAAGCATGTTCATGTACAC 2102371 36 100.0 36 .................................... TCTATCTTCTGGAAATAAATATTTGTTAATTGACAT 2102443 36 100.0 36 .................................... CAAAGCCAATATCTGAACTTCTGTGCAAAAGGGTAA 2102515 36 100.0 34 .................................... CCACACTCATCGCGCTTAGAGATCGCGGTCTCAC 2102585 36 100.0 34 .................................... CATTGAAGATACTTGAGCATTTAGAAAATCTCTA 2102655 36 100.0 36 .................................... ACCAGTACGTGAATTTAGCAAGCTTACCCATATTAA 2102727 36 100.0 37 .................................... ATTTGTTTGTTGAGTTTTTGTGATTAGTAGTTAGTTT 2102800 36 100.0 35 .................................... CTGCCAATATTTAGATAACGATCTCGCGCCGCCTT 2102871 36 100.0 36 .................................... TCTGATACTTGAGAGTTTGCAGTAATCGCTCTCAAT 2102943 36 100.0 36 .................................... TGATAAGCCATTTCGTTGCTCCAACTCTACAAGAAA 2103015 36 100.0 36 .................................... ATCCTGAACCGCGCAAAAAGAAGTCTGAGCAAGTAA 2103087 36 100.0 35 .................................... AACAAAGCGATTCGCGAGTGCCGCCGTTAATGACG 2103158 36 100.0 34 .................................... AAGGCAGCGGAAAAACCCTGCCTTATCTTTTTCG 2103228 36 100.0 35 .................................... ATTTGCCTGAAAACTTGCGCGAAAATTTGATGCGT 2103299 36 94.4 35 .........................CA......... CTAAACTCGACGGGAATATAATAATTTGTGTATGT 2103370 36 88.9 0 ....................T....C..G......T | ========== ====== ====== ====== ==================================== ========================================== ================== 28 36 99.4 36 GTGCTGGGATTCTTTCCCAGCCGAATTAATGGAAAC # Left flank : GGCCACAACCCAAAAGCTAGTGGCGGGGGCTGGTCTGCTGTTGGCCTATACAACAGGGTATGTCGCGCCGCTGATTTTAGTCGGAGTATTTAGCGGTGCCTTGCAAAGGCTCTTGGCACTGCGGCAGTGGTCGAGTTGGATTACCCCTGTGAGCGGTGTGCTCCTCATTGCTTTTGGCGTCATTGCTTTAGCCATTCGTCTTTAGTGCTCAAGCCAAAGGGGCAGTGGTTGGCCGATGGCGGTAGCCATGCAAGCACCTCTGGACAAAAATATCCTCTCAGCTCGGCAATTTTCTCAAACCCAGTCTCCACAACGCTTTGAGCAATTTCTAACAGATTTGGAGGTGCTTGAATTTTCCCGAAATTCAGTTCCAGAGTGACTTTTACGTCCTGTGACCCTACGGATCTAAAAATTTTACAAAAACAAAAAAATGATCCCGTCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCGTAGAGCACCTTCTAGGAGGGTGCC # Right flank : TGGAAACAGGAAAATGACAAATTGTTGGTTTGAAACACGCAAAGAGTGTCCAGCATGTGGTTCTGCGGCATTCCAAATAATTTATGAGGCTGAATATGATAGACCACCGATTAAGGATTACCTCAACGATTTTTATTCAGGAAGAGTTGAGTTTGATTATTTAGAAGGAGCAGTTTATATTCTATGCGAATGTGACATCTGCGGAATGATTTTTCAAAGAGATATCCCCAACAGAACTCTAATGGAAAGGCTGTATGACCACTGGATAAATTCAAAGGAATCCTTTAAAGAGCATCAAGAGAGCACTAGTCTTGATTACTATTCTCGCTATGTAAAAGAAATCATGCAGATTATTTCGTATTTTAATGAAAAGCCTTTTCGATTGAACTTTCTTGATTTCGGTATGGGCTGGGGTAACTGGGCGCTGATGGCTAAAGCTTTTGGATGTGAGGTGTACGGAGTAGAATTATCAAAAGAGTGCATAGCACATGCTCAGTCAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGGGATTCTTTCCCAGCCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //