Array 1 1-204 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUU02000051.1 Photobacterium damselae subsp. damselae strain 164dp-OG2 Contig_000053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 24 85.7 32 ----........................ TTTGGTGGTTAATTGGTGCTATAAACAAACAA 57 28 100.0 32 ............................ GTAAACGCCTGGCTGATTGGCCAACTCTTTAA 117 28 100.0 32 ............................ AATCGCACATTGCCTCTTGCTCGTATCTTTAG 177 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : AAATCCACTGCAGATCGGGGCGTTACTCCCTTTCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCCAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTGAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGCTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCGCCATTATGCTTGGAACAGGTACATCGGTGACCCAAGCTGCTATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 81887-81678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUU02000056.1 Photobacterium damselae subsp. damselae strain 164dp-OG2 Contig_000058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81886 28 100.0 32 ............................ TTAATAACATCTAGAACCAATTCACCAACTTT 81826 28 100.0 32 ............................ GGTATCGATGCGGAAGCGCAAACATGGTCCCA 81766 28 100.0 32 ............................ ACAATAGGGATATTATTATGTCTACACTAACC 81706 28 82.1 0 ...........CA........C..CT.. | A [81684] ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATCATTAGCAAAAGCATAAATATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGTTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAGTTGATTTTATCTGCGATGGTTGTACAAAAAGCTCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTATTAAC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //