Array 1 713267-713871 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217483.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 713267 36 100.0 35 .................................... CTGAATGCCTAAGAGGGAATTTAGATTATACTGAT 713338 36 100.0 36 .................................... ATTAAGAAAAAATGTTTTGTTGCTATCAGGATTATA 713410 36 100.0 36 .................................... ATGACTTACAACAGGAACACAACCTCAAGTTTATTG 713482 36 100.0 34 .................................... AAGAGACTGGCAAGGTACCTGACTATGGAAGGGA 713552 36 100.0 34 .................................... TAAAAGAAATTCAAAAAGCAATATCTGAAGAAAA 713622 36 100.0 35 .................................... TCACAGATTTTTTAGTGGAGCTAGCTTCTATCACG 713693 36 100.0 35 .................................... GATATGGCAGAGATAATTATTTTAGTAAAGAAAAA 713764 36 91.7 35 ..................C.............A..C TCCATCGGGTGCCAGGAACATCAACGTGCTGCAAT 713835 35 80.6 0 .......-....T.....G..T........C.C..A | CC [713863] ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 96.9 35 GTGCTGTAACCTAAGATGTCGCAAGGCGTTGAGCAG # Left flank : GACTATCTTTAGGCGAAAGTCGAGATTTAGTAAATTCAGTCAAACTGTGGTCAGGTTGTTTTAACAAACAACCGCAATGGCTGGTTCAAGACCAAGATGGAATGCTAGCATTACCTTATTGGGTAGACCACGTTGGTTCACAAGGCACTCGTTGGCGGCGATATTTATTTCAAGAACTTGTACAACCCCATCCACCTGAACAAGCCTGGACAATAATTCAAGCAAAATAACATTACCAATCGTCTAAAATTGCAAGCATCTGTGAATGTAAAACTCAAGGAAGCAACTTTTTCGTCCAGAAGGCTTGTAATAGAAGAGTTAGAAGCAGTTTTAAAAACCTCCTTAGTGCTTGCAAAATCCTGAAAGCTTTACTGCTCAACAGTTGTATAAGTCAAATTTCATAACTTACTGAGACAACCAACTGCTGTAATGGCATTTTGCGCCAGGTACTTGTAAAATTGTTCAGGAGGCTTCACAGCGTAACGCTTTCAACAGGCGCC # Right flank : AACCAAAATTACCTTACAGATATTTATGGAAACTTTGGAACTTAATACCAAACTTGAAACTATTCGTGTGTCTTCGCTTCACGCACTTGCCTATTGCCCTCGTCTTTTTTACCTCGAAGAAGTTGAGCAGCTTTACACGCAAGATGCAGCTGTCTTTGCTGGGCGCCGTTTGCACGCGGAACTTGAAAAAAAGGAAGATGAAGAGTGGGAGGAGTTATTTCTTGTTAGTGAAGAGTTAGGTTTACGTGGACGTGTTGATGCACTGCGAACTCGTGACGGGGAAACAATTCCTTATGAACATAAACGCGGACGTTGCCACCGCGATGAGAACAAGCAACCACAAGCTTGGGAGAGTGATAAGTTGCAAATTCTCTCTTATGCTTGTTTACTTGAATCAGCATTAGGAATTCCGATTAAAGAAGGTCGTATTCGCTACCATGCTGATAATCTGTTAGTGCATGTACCTTTGGATGACATCGGGCGCCAAGCAGTACGTGACG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTAAGATGTCGCAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 716112-716290 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217483.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 716112 36 100.0 35 .................................... AGGCTTACCAAGATGACTGGCGCAGTGCTAACTTG 716183 36 100.0 36 .................................... TACACAATAAGCCCCCTTAACTTGTCGGTTGGAGAG 716255 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 40 GTGTTTGAACCTAAGATGCCGTAAGGCGTTGTCAAC # Left flank : TCAAAAAAGATGGCGTAAAGCTTATAAACTTATAGAAGGATACGGCGAAAGAGTTCAATACTCAATTTTTCGCTGCTGGCTAAGTCAACGCACGCGCGAAAAGTTACGTTGGGAACTAGAAACAATCTTAGCAAGCGAGGACAACATCCTATTCATTCGTCTAAGCAATCGCTGTGTTGAAGATATCCCAAAATACAACCGTCCTGGAATATGGCAAAATAGAGATGAACCTTTTTTAATCATCTAAAATTGCAAGCATCTCTGAGTGTAAAACCAGAAAAGACAACTATTTCATTGAGAAGGCTTGTAATAAAAGAACTGGAAGTAGTTTTCAAAACCTCATCGGTGCTTGCAAAATACTGAAAGCCTTACTAGACAACAATTGTATAACTCAAATTTTCCCGCTTACTTATATAACCAATTGTTGTAACGGTATTTTGCGCCAGGTGCTTGTAAAATTATTCAGGGGGTTTTACAGCGTAACGTTTTCAACAGGCGCT # Right flank : CAGTTTTCACATCCTGCTGGAGGCTAAATGATATATAAATATTAGTCATGAATCGTGAGTTAACGTGTTACTTAAATCGAGTCAGGTAATAGACATCGTTCCCCCAAGGGATAAATATAGAATCGACGCGCTGAATGAAAAACCCTTGGAGCCGATTGAATACTGCAAAAGATGGATTGATATGTCCCCCGATGACCGTGGGTATAGAAAAGCCTGTATCGCGGCCTTAGCTGAAGCAACTGGGCTAAGTCCAAGGACTATTGGCAACTGGGGGCAAAATTTTGAAAGGCGCCCAAACTACGTGGCGCATATTTTACGCATGGCGGATATGCTTAACCAAATCAAGACAATAGTCCTACCTCCTGACTTTCTGCAAAAATAATTTACTCGCGATTCGTGACTAAACACTTGTGTTTGGAGCAGAGATTTCATAACTTGAGTTCAGCAAGCAAGAAATTTTTAAGGTTAAGTACACAAAACAAAGAAAATTACTACGCTGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTGAACCTAAGATGCCGTAAGGCGTTGTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 722470-721997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217483.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 722469 37 86.5 34 A......T.....C.....C.....A........... TCATAGTCAGCTTCAGAACCCGGAATTACTTCTC 722398 37 94.6 36 ...................C.....A........... TACGTGACCTGTCAACAAAAATAAGACATGTTGCCT 722325 37 100.0 36 ..................................... AAAGTAGAATAATTTCATTGCGGAGAAGTAAACCCT 722252 37 100.0 35 ..................................... CCAAACTTGGATAGCACCATACGTTCCAAATCAGA 722180 37 100.0 37 ..................................... CGCTATGTTACTGATTTGTTGAGTCATAATTTTAATA 722106 37 100.0 36 ..................................... CCGGAATCAACGCACTGTAATGACAAGAAATCACGA 722033 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 97.3 36 CTTTCAACCCACCTCTAGCTGGGTTGGTTATTGAAAC # Left flank : TTATCAGAACGGAGTGAAGCTGTAGATAAGGCATCACAATTTGTATTAAAAGTAGCGCTCAAAGCATTAGAGCAAGATGGTAGAGAAGTAATACCGGGTGTGATAACAGTAATAGTCATGGGTTACACAATAATTTACAACTGTCGATTAACACATTATTTGTCGTCGTTAACAGATTAATGTCGCCATAACAAATTATTTGTCGTCGTTAACAGATTAATGTCGTTGAACTAGCCATACATAGCGTTAACAAATTAATGTCGTCGAGTAATAGATGCTTAATACAATAATATATTCTGTCTTGATATGCTTGCAAGATATTGCTTTTCGCTAGAAGGTATTTTTACATCTTACTTTGCTCATTTAGTGCATATGTATTAAAATTATACTGTCAGCCATAATAGGAATTTCTTAAGAGTCCTATGCTGTAGAGCGACGAATTAAATGTCGCTTTTCGCAAATTAGTGTCGTTCCTTCATACAGAAAGTAGCATTTACAAA # Right flank : TTCGCCCGTCTAGAACCTTACCAGTAAAGCTTTTCTAACATAGATTTGGCGTCGCCCTAAAAAAGCATCTTCATTTAAAATGAAAAAACTAAATTAATTGACAGTCCTATTCTTGAATCATTTACTAGATAAAGGTTTTAAGATTTTGGCGGGACTCCAGGGATTTTGCCTGCGCTTCGACACGCCAAAAAAAATATTTGGAGGGTTCCCCCGACGAAGGGGGTGATTCGGTAGCCACCACTGAGGTAGTCCCCACCGTTATGCAACGGCTCAAGCTTTTGGGCTTTACTCTTTTTGCTGGGAGCGCACCTGTCCCTTATTAATATTCTTGTATAAGCATTCTTCTTTGTTACTAGAACATAGAAAAGTTTTGCTTATCTAAGACTTAAAAGAGGGCGTATCCTGTCTGAACGAGCCAGACAGCAGCTTCGAGAGCGGGCAGCTACTAGGGCCAGAAAGCAAAACGGTTTTCAAGCCGTCAAACTAACCCATACTTATCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCTCTAGCTGGGTTGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 36217-36853 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217481.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================== ================== 36217 35 100.0 41 ................................... CCATGTCAGAGTTCCTTGGGGGAACTCTGACCCTGATAATG 36293 35 100.0 38 ................................... CATTTTTCCTTATAGGACTAAACGAGCTGGCGGTTCTG 36366 35 100.0 36 ................................... CCGCACGTTGTCACCAGTCACCGAAGTGTTGCTGGT 36437 35 100.0 39 ................................... CTCTTTCTTTGTCAGAAATAAACATATGAACAAATTAAA 36511 35 100.0 37 ................................... CCATGATGCCCAGCAAGGCGGCACGAATCGTGTAGGC 36583 35 100.0 41 ................................... CACGGAGAAGCTTCCAAAGGAAAGCACTGTCCCAACGCTTC 36659 35 100.0 56 ................................... CGCAGAAAGATTCTGCCGCTGGGTTTCTTTGTACTTGCTAACTGCAAGTACAGCAA 36750 35 100.0 35 ................................... CTGAAATACTTCTTCACTCTCGTTTTGTCTTTGTG 36820 34 94.3 0 ..............................-..C. | ========== ====== ====== ====== =================================== ======================================================== ================== 9 35 99.4 40 CCTTACCGATTGGTTTAAATCGGAATTATTGAAAA # Left flank : ATTATAAGATGCTAGTCGTTGTTGTATATGATATTCCTGATGACAAAAGGCGCACGAAGTTATCCAATTTTCTCGAAGGTCATGGGCAAAGAGTCCAATTTTCTGTATTTGAATGTTTCTTAAGTTTAGAGGAGATGCGGCAACTTTATGTAAAAGTAAGAAAGCTAGTTAAACCAGTTGAGGATAATGTTCGCTTTTATTGGATATCTCAAGACGCCATACAGAGGGTGTTAACCATAGGGGGTGAGGCACCACAACAGCCGCCAAACTATTATGTTATCTAGCTTTGAAGGTTGTAAACAATATTTTTGGCGCCGTTTCCACACCACTCGCCAAATCGCTGAAACCCTATCTTTCTCGTTGAGTGGTGTGGACTAATTACACAGCAAAGTTTTGAGGCATGTATATGTATCAAATTTTGGGCAAATATATTATAATTATGGAAGTGGTGTGGATTCGTGGCTCGAAACCCTTATCCAGTAAGCGCTACTAGATGAACT # Right flank : ACACTTCTTAGCTCGTTAAATTTGCTAACGAGCTTTCTTTGTTTTTCACCTGTTAGATAAGTTTGGAATAATTACCAGTTTGTAATTAAGGCGCCTATCTATAGCGTTTCCTGTTCTAATGAAGTATACAAAAGCAGGCAGGGAGGAAATGCTGTAATACTCTCTCACAAAATATTAAACACCTGTAGAGAGATAAAGTAGTATAAAGTCGGTACAGTAAGCATTTGAAGCAAAATACAAGTTGTGGAAACTCGCGTTTCCAACCATAGGGTTTAATAGAGCATGTACAAGTAAAAACCCAAACTAAAAACGAATTGGGAGAATCTATGCTTAGAACTCGTCGTGTGCTGATTTTTGCAGACAGCGATAATACTTATCTGGCAGCGCAAAGTTTTAATAGAAAAATAGACTGGCAAAAAATTTGTCAGTATCTAGCTGACCCAAAAGAAGGTAGAGAATTAATAGAGATGGTAATTTATGTTGGTCTACCTCCAGCGAGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCGATTGGTTTAAATCGGAATTATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 45666-45920 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217481.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 45666 37 100.0 39 ..................................... TTGACGTTTGTACTCAAAATAGATTAAAGCACAAACTGA 45742 37 100.0 35 ..................................... ATACGAATTGCTGGCCATTTGCAGCTTTCTGTGCA 45814 37 100.0 33 ..................................... CTGGACCGTAGTAGCTGAGTATCAGCCCCTGTC 45884 37 94.6 0 ....C...............................G | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.7 36 CCCTTCCAATTGGGTCAAATTGGAATCATTGGAAACT # Left flank : TGTGGAGCGGGCATCCCTGCCCGCTATCTTACATTTTGTAATAATAACTTGTGTATTTGTCGATTATTGGCTTCGCTCTTACCCGCATAGGGTTGAAAACCCATATGCTAATAGCATAAGCCCTCTGAAAGAGGACTAAAAATCATTGTGATTTTAAGTACTATATATTGTCGATGTTGTGGCTTTTACTTAGAGGTGTTATTGGATATCCCAGATTCAATTGAAGGGTAATAGCCATAGGAGGTTACACCATGCATCATAGGCAAAACTATTACGCTATCTAGCTTTGAGGGTCATAAAGTTTATTATTGGCGCCGTAACCACACCACTCGGCAAATCCCCAAAACCCTATATTTCTCGTTGAGTGGTGTGTATTGCTTGCACAGTAAAGTTTTGAGGCACATGTATGTATCAAATTCTTAGCAAATATATTATACTTTTACAAGTGGTGTGTATTTGTGGCTTGGAACCCTTGCCCAGTAAGCCCTGCTAGATGAACT # Right flank : GTTCAGGGGGGAAGCGACTGCTCGTTGCCAAATTTAGTAACGAGCTTTCTCTATTTTTTAGCAGTTAGATAAGTTTGGAATAATTACCAGTATGTAATTAAGGCGCCGTTTCCAAAATTTCGTCATTCGCATAATTAGGCGTGACAGTTGGAGAAATCTTTGTAATTATGTAGTTAAGCTTTGAAAGTTATTGCTTTGGCTTGTGTTTACACTGTGTAAAAAATTGGTGTTTTAGCAAGTAGAATCTAGGTTTTTAGGCGTATACTTAAGATGCTACCCTACGGGAAAAGCTCCGCTTTACGTTCGCGACTCATGACAATAAACGACCTCTAAAATCTATTCATTGTCGAAGGCAAATCTAAAATCTAAAATAAAATGGTTAATATCAACGAAATACCGCTGATGTTCCAAGCCCAAATTAGCGGACGCGGGCAGGTACAATATATTGGAGACCCAACAAATATAAAACGCTGGGTTAACGAATGGAAAGAAGGCGCCCT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCAATTGGGTCAAATTGGAATCATTGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 50555-49865 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217481.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 50554 37 100.0 40 ..................................... ATGTTGTAGGGTTTTATCAGTGGTACAACTCAAGTCTAGA 50477 37 100.0 34 ..................................... ATTTTGAGACTGATAAATACACAGAAATGTGTAA 50406 37 100.0 33 ..................................... AAGTTTGCCCGCTCTCTAGACCGCATGTCTAGG 50336 37 100.0 34 ..................................... CCTTTGTGGGACTTTTATCTCCTGAAGAAGCAAA 50265 37 100.0 34 ..................................... CTGGAAAAATGGACTAGACGAGCTAAATAGACTT 50194 37 100.0 35 ..................................... AAGAAAGTGGTTCCTATCGTCCAGATAGAGACGAA 50122 37 100.0 41 ..................................... GCGATGAGCCAGCAGACGTTTTTGAAAAACAGGCGCCTGAT 50044 37 100.0 35 ..................................... AATGATTTATTGTGGGGTCGAAGTGATTGCTTTGA 49972 37 100.0 34 ..................................... AGAAAGATAAAATCAAGGGTGGGGTAAGATTTAA 49901 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 100.0 36 GTTTTCATTAAGGCGCCTCCACATGGTTAGTGGAGAC # Left flank : TGGCAGGACTCTACAGAGACCAAGGACGGTACAGTGAAGCCGAACCACTGTTTCAAAAAGCTTTGGAAATTGCAGAACTTAGCTTAGGGGCAGATCATCCTACGACAGCCACTATCCGTGAAAATCTCAAATCATTGCGTGATTATTACGCTTAATAACACTTCCCTCAAATCTGTAATAAAAATTTACATGGAGATGGCGCGAGAGCGAGATGCCTGCATTAGAAATAGGGAATTAAGAAATTGTTTCTTATTTTGTACAGGCGCCGAAATTAGAAAGGGTTGATTTACAGAGGGGGAAGGAGGGCTTATAATCGCATCGCATGTGCCCAGTGCTGGGGAAAGCGCCAAAATTGTATGTAATAAAGCTTATCATTTGAAAAACTGCTGTTGAAAACGCGATTTAAAACAACTGAGTCTGTATTACACGAATTGGCTCAATTGTAGAATGGGTGGCTCAAAGTATTAATTTCTCGTGGAGCGTTATCGCCAACACGTACT # Right flank : TGTTGGGTTTTGAAACCCTTGTGATTAAAGGGTTACGATACCCGTTTCCGCGAACCACATTTAAGAGTACCGTTTCAGGCATTGGTTGTCAATTTTCTTTTGGGGTTAATTAGGTTGAAATTGAGTTGTGGCAATGGTTTTGGGGTTTCCGCGAACCTCTATTTGCTGTCAAATGCTTGAAACCTTTGGTTGGTGGTTGTTTGAAGGTTATATAACAAGCGTTTGATAAAAACAGCCATAGGTTTGCGGTGTCAGGTTGGCAAAGGCGCCATATTGCGAAAAATGCTTGCACTAGAATAATTTTACATAAAAATGCAATCAATTCAAACGTCTATGCTAGTAAATTCGCAATATGTTCTAATCTTTGTTTGAGTTTGTTAGGTGTGTAATGTAATTTAAATTTGCTCATAGCATTAAAAAATGGTTGCCTGACAGATTTTTCGTAGGTGTCTTTGACTGTTTTTGAGCTTGGTTTTTCTTCAGGATACCCTAGTAGATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTAAGGCGCCTCCACATGGTTAGTGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 505441-506197 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 505441 37 100.0 39 ..................................... TAAGTAGTACATTAGTACCGTCATAGTATAGGTTACTGA 505517 37 100.0 35 ..................................... CCCATCTTTATCTAGAGAGATTTTATTCAAATCAA 505589 37 100.0 33 ..................................... AAAACCTCTACACTTGTTCATAGCATGGGTAAT 505659 37 100.0 34 ..................................... ACTAGTTCCCATTCACTGCTAGTGATTCCGTTGG 505730 37 100.0 33 ..................................... GTAATATATGCCTCTACAAAGGAAGCTTGGGTT 505800 37 100.0 37 ..................................... ATTAAAACACCGATTTTCAAATAATGGCTTGACCTGC 505874 37 100.0 36 ..................................... TTCAACCCTGTAACATCAGCGTAGTACACGAAAACA 505947 37 100.0 34 ..................................... AATCACATCAGTTGCACCAAGATAAGCTAAATAA 506018 37 100.0 32 ..................................... TACCAAATATAAGCGTACATTGTTGGCTTGAA 506087 37 100.0 37 ..................................... AAGATTTGATAACGAATACGTCACTTGGGGCGAGGAT 506161 37 94.6 0 .......................C............T | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.5 35 ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Left flank : AAATGAGTCAAAAATTTATATTGGCGTTTATTATGGATAAAATTCAAATAACTGGCATTGACCATATTGTAATTCGATGCTCAAATCGTGTAGAACTAATGGATACAGTCAGCAAACAGCTTGATGTTCCGATTCTCATTCCCGCTTTAATATATTAAAATTGATTATTGCGAATGCCATGACTGAGTTTTCACAACCAAGCCACATAAGCAATAATATATAGACAGTGATGCAGATTTTTTTGGTCAGGCGCCGCGAACTATAGGGTGTTTTTTTTGCAGAGTCCAAATTTATTGCGTAAACGCTTGCCCAGTATAGCTTTGAAGCATTCCACCTATTTACAAGGTTCGCGGTAACTCTGAAACCCTTACCATAAAAACGTTTTAGCTATTTTGAACGGCGCCTGTCTTGACACATTAGCCTCTGAAACGCTATTCTTACTCTAGGTTCGCGGAACAGCACCTTGAAAACCAAATACAGCAAAGCTTTTACGCCAAGCT # Right flank : TTGAAGTATAGTTGGCACGCTTTATATTTAGTATCCAATACGGCGCCACATTTATTATGTAAGATAAAGAAGAAAAGTAATATTAGTATAGTTATGATTGTTACAACAGGGAACGATATTGCAGGACGCGCAATCAAAAATTACGTTGGTATAGTGCGAGGGATTGTTGTACGCTCACCAACGATTGGACAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATACGACCGTATGATAAAACAAGCACAAAGTTTAGGTGCCGATGCTATAATTTGTATGCGTTATGATGCCACAGAATTTGCTGAGGGAGTAACTGAAGTACTAGCTTATGGTACGGCGGTAAAACTTGAATAAGGTTTACATCAGTATGCTTAGTACTCAGATATTTACATTACATCAACTAGATGAGAACCATGAGTTTTGGACGGCATATTTACCTGGTGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 1054924-1059726 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1054924 36 100.0 35 .................................... AACTAAAATTGTTGAGAATAAGCAGAAATCGCTAA 1054995 36 100.0 36 .................................... GCAAACCTAAAAACATGATTACTAGTTTTATATCTA 1055067 36 100.0 41 .................................... ACCATTGCTTCGCGGTAAGACGTAGTGTGCGCCTCATCCAA 1055144 36 100.0 40 .................................... ACAAGCAATTATTCTTTCTACAAAACTGCTGAAATAAAAG 1055220 36 100.0 42 .................................... TTGTCCCGTCTCCGTCAAAATCAAATTCAACGTTTGTATTGT 1055298 36 100.0 37 .................................... CTAACAAAAACATTGGGAGAAGAATAAGATTGTGCGA 1055371 36 100.0 35 .................................... AACTCAGGTGGGAGAGGCGAATGGTAAGATTTACC 1055442 36 100.0 40 .................................... ACTACCCGGTATTGTAATTTCTACTTTTTTACCCGCAATA 1055518 36 100.0 37 .................................... GATATGGAGGCAGCAGCCATCAACTGGCAGGAAAAGG 1055591 36 100.0 39 .................................... CGTCACAATATGAACCATAAGGATAGGCGCCTGTATTTT 1055666 36 100.0 38 .................................... TTTACGTTTTGGGAAGGGGACTTCGGCAAACATCCCTT 1055740 36 100.0 39 .................................... CTCGGCGTTTTTGTTCCACTCTGCTTTGATTCTTTGTTT 1055815 36 100.0 39 .................................... CTCTTTGCCTTCGTATTGAATGCCAACTATCGTTCCTTC 1055890 36 100.0 37 .................................... ACCTTGTATGGCAAGCAATTCGTTTCACACTTGCTAG 1055963 36 100.0 41 .................................... CTCAAATAACTTAGTTTTGAATAAAGCCTGAATTTGGCTGA 1056040 36 100.0 40 .................................... GGAACTTCGAGACGATGGTTACTTATTCCCAGCACAGGAA 1056116 36 100.0 45 .................................... TCAGGGACGACAAAACACATAAATGTCATGACTGTTAACATGCAA 1056197 36 100.0 43 .................................... CTTAACCGTGTACAGTCACCCATCATTAACAAGTTACGTCAAG 1056276 36 100.0 37 .................................... AAAGTTTTTATTTCTTTACCTACAAAAGTAGAAATAT 1056349 36 100.0 46 .................................... TAGCTTATCCACCTTGTCGCAAAGTATTTTACCGTAACGAGTTCTA 1056431 36 100.0 35 .................................... ATAATGATTTAGTGCTAACACGACCCCCAAATGGT 1056502 36 100.0 37 .................................... AAAATACAAAGACCAATATCCATTCGTCGTAATTCAG 1056575 36 100.0 36 .................................... CGCTTTATCTACACAGAATAATCAGAATGTAACTGA 1056647 36 100.0 37 .................................... TGGTGCAAGTGGTGGTTCATCAAGCAATAATCCCCTA 1056720 36 100.0 36 .................................... AAGTTTCCTTGGAATATGCCTGAACACGGCGATAAG 1056792 36 100.0 35 .................................... AAATACTCAATACTTTTTGAGTAGTAGATTTGAAT 1056863 36 100.0 42 .................................... ACTGCATCTCTGTTTCAGAGAGTACCTCTCCTTTATCAGGAA 1056941 36 100.0 37 .................................... TTGTAATATACTTTTTATAAGTAATACTTTCTTCTTT 1057014 36 100.0 36 .................................... CCCATATGGAATTCTATGGGTGGTATAACAACAGTA 1057086 36 100.0 38 .................................... CAATACCAGTAAGTCTCATCCCATTCGCAAAAGTTGGG 1057160 36 100.0 39 .................................... CTGTGATTCTAAAAAGCGCTTTCCATCAATCCATTGAGG 1057235 36 100.0 39 .................................... ATAGAGTGTATACCTTTCGTGCTAAACCATTCCCTAGAT 1057310 36 100.0 39 .................................... GCAGTACCATTTAAGTTTAAACCTGTAGCTACTGAAGAA 1057385 36 100.0 36 .................................... ATGCTTTTTTTGCTGCTATAACATCTTGAAATTTTA 1057457 36 100.0 33 .................................... ATCTATCATTAAAGACTCACACACAATAGTTCA 1057526 36 100.0 40 .................................... TTACATACTTCCCTTCACGGTTCTTTTGGTTAGTTTCAGC 1057602 36 100.0 39 .................................... GTTTTTACCTATTGTAGAGCATATATTTTCATACTCTTT 1057677 36 100.0 38 .................................... TCGATTCACCCCTCGAATAGTTGGCGATGGTTCGTCAA 1057751 36 100.0 35 .................................... GCTCGATAATTTCCCAAACTTGTTTTTCGCTCCAA 1057822 36 100.0 40 .................................... TTTCCTAGCACTTGTAAATACACACGTCCAACGGCCGCTA 1057898 36 100.0 42 .................................... CGGCTGAAGTCGTAACTTCGCTATCGATCAAGCGTCCGTTAC 1057976 36 100.0 37 .................................... TCTTAATGTTTGCAATCTTGCTAATGAATCTACAACC 1058049 36 100.0 35 .................................... ATATGTTAGCAATGAAAACCAACAAACAGATTAAA 1058120 36 100.0 35 .................................... ACATACATAATGCGCGATCTCAGAATTTGTTTTTT 1058191 36 100.0 42 .................................... AAAAAGACCATATAATAATACTAGACCCTGAAGCCTTTCTCA 1058269 36 100.0 41 .................................... CCATGAGCATCTTGACCAGTCCAGCAGGCTTGGCGTTAGGA 1058346 36 100.0 47 .................................... TCAAATACAGCAGTAGCAGCAGCCGACCCAATACCAGCAGATACACA 1058429 36 100.0 43 .................................... GCGCCATAAATGCCATGCTTGCTAGATGTGCCTCGATGTAGTA 1058508 36 100.0 39 .................................... TTTTACTTTCAATAAAATCAGAATACATCGCTACATCCC 1058583 36 100.0 42 .................................... AAATCAAATGCCAGCATTCAAAAATAAACTGGAAGAGATTAA 1058661 36 100.0 36 .................................... AAAGAAAGAAGTAAACCAAACACAAAGCTTATGCTT 1058733 36 100.0 39 .................................... TTTTTTAGCTGTGTTGACAAAACTCAGGTCATAATCGAA 1058808 36 100.0 41 .................................... CTCGAGGCCATTGGCAAGATCGTCGCCGCCATTGTCGAGAT 1058885 36 100.0 35 .................................... TTCATGAGGCGCCACTGTTACGGTGATAGATGTAC 1058956 36 100.0 38 .................................... TCTTCTGTTTTGCAGTTAGGCATCCAGCTACTTGTACC 1059030 36 100.0 39 .................................... TTATGACTGTAAAAGAGTGGAAAGCTAAAACATTTAGTC 1059105 36 100.0 32 .................................... GTCTGTGTCCCCACAATGGTTGAAAGGGGGGA 1059173 36 100.0 36 .................................... CTTTAGAGATTTGTATTTTTACTACAAAGAAATAAA 1059245 36 100.0 38 .................................... AAACTTATGACTATGCTTAAGATCAGGAACACCAAATA 1059319 36 100.0 37 .................................... ATAAGCTTCCAGTGTTCTCCTGGTTCATCAAGTAAAA 1059392 36 100.0 40 .................................... GGTATAAACATAGACAAATCGGAACAATTATTGTATCCTG 1059468 36 100.0 38 .................................... AGCAAAATTGAAGTTTAGATAAGTTGTTTACATCAATA 1059542 36 100.0 36 .................................... ATTATTAAGGCGTATACTCATCAGCATCTTCTCTAC 1059614 36 100.0 41 .................................... ACAGGACCCTCATCAATCTGAGCTTGCATGAGAGGCATCAT 1059691 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 65 36 100.0 38 GTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : CTACAAAACAATAACCTACTCAGCACTCACTACTATGTTCCTATACGTTGTCGCATACGACCTTCCCTGCGACAAACGACGCAAAAAAGTCTCAGACCTACTCGAAGGATACGGATGTAGAGTTCAATACTCAGTATTTGAATGCCAGCTAACCCCTGCAAAAATCAAAGAACTGCGTAAAAGGCTCAGTAAAGTTATAAAATTAGATGAGGACAGCGTGAGATTTTACCCATTATCCCAGCACACATTAGGACAAGTCGAAATTATGGGCATTGGCCCTCCAGTCATTTCGCCACCTACTTCGACGATTATCTAAATAGTGCGAGTGGGTTAGCAATTCCCTCTAAATGCCGACTTTCTCGTTGAGGCCCTCGCCGCCTTGCTGTATAAGAGTTCCAAGAACTTTCATCATGATTTTTACCCATCTCTCGCGGAAAATTTCAGACCCCCTCGCAAACTGCCTCTGGGCGCCTTACACAGCAAGAGGTTAAAATGGAGGG # Right flank : CTTGATACTATCAAATTCAAAGCTAGTGATTAACCCATCTCTAGTCCCTACTCGTTAGGTACAATATTAAACATAGCTCCTATTATTTTGAACATCCCAATTTGGAAGAATCATGTCATGATTTACACAATGAAGTATCTAAAAAGCGTGAAGTGAAAAGAGATTCTTCGATGCGCTCAGAATGACAATTTACATTTTAGTAAAATTGGGATGTTCCCTATTGTAAAGCTTGAAGTTAAAAGAGATTCTTCGCTGCGCTCAGAATGACAATTTACATTTTAGTAAAATTGGGATGTTCCTTATTATAAAGCTTGAAGTTAAAAGAGATTCTTCGCTGCGCTCAGAATGACAATTTACATTTTAGTAAAATTGGGATGTTCCCTATTGTAAAGCTTGAAGTTAGAAGAAATTCTTCGCTGCGCTCAGAATGACAATTTACATTTTGATAAAATTGGGATATCGCTATTATTTGTACAAATTAATTGGAGATGATAGATGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 1434213-1434716 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================ ================== 1434213 37 100.0 34 ..................................... ATTACTTCTATGCAAAAGCATTCAATAAATTCAA 1434284 37 100.0 34 ..................................... AATAATAACATTTCACCGAAGTTAAAACAAAAAT 1434355 37 100.0 144 ..................................... TTAGGCGAAGTTCAAACGGGAGCATCCACTTTTGGAACATACATAATTATTTGGCGCCAGAAAGCCTACTATAAGGGTAGTCTAGAAAAGTCGATCTGCCAAAAGTGGATGCTCCCAGTTCAAACCAGTTACGATGCTATTGAT 1434536 37 100.0 35 ..................................... TTTTTCAAGCAAGGCTATAAAATCTTCACCTGTAT 1434608 37 100.0 35 ..................................... TTGATTTCCCATTCATTGAACTTCCTGAAGAAGTT 1434680 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================================================================================================ ================== 6 37 100.0 57 GTTTAAACTTTAAATAATCCCTTATAGGGATTGAAAC # Left flank : TGCCAGAAATAGGATTAGGAATTGGAAGATATATAAGTGTATCAGGTGGTGGCACCATTACTGAAGAGTTAATTGGTTTATATGACGAACAAGGAAATCGTCAACAGATGAATTACCTTTTTGATTGGCTGTAGCTATATAATAACTAAAGCACGTATATATGGTAAAAATAGAGCATATTCACTATAAAGCTTTGGCTTTTATATAGGCGCCACAATATATAATTATAGCAACACAAATTTCTCTGCCAATACCGCGAACCACAGGGTGTTTTTTCAGCACAGTCTGAATTTATGCGTGAACACTTACCCCGTCTAGTTTTGAAGCATTTGACATCTAAGAGAGGTTCGCGGTAACTCGAAAACCTTTACCAGTATTATGTTTCGGCAATTTTAAGCAATGCACCTCTTGACACATCAACCTCTAGAAAGCTATTCTTACCCTAGGTTCGCGGAACAGCACCTTGAAAACGAAATACAGCAACGCCTGGAGGTTGAGCA # Right flank : CACCTATAAAACTGTGGACTAATCCAGAGAAGCAGTTTAAAGTACTTATCAAAGCATGATTTTGATGAAGATACTCGCTGTAGTATTTGTGGCGCCATCGAAAAATTAAATGTTATAGATTTGAACGTGTTAAATTTTGAACGTCATAAGTGGGGAGGGGTTCGACATCCTTGTCCAGAATACATAGCATTTGATTTAGAGCGCTTTGCTGGGCTGGATAAAGTTACACCTACAAAAGAAGATTTGCATATAATGCGACAAATAATAAAGCTTATAGAGGAATGTGAAGCCACTACAAAACCAAATGATTTAGAAAAAAGACTAGCAACAATATTGAAATCTAATAAAGATGAGAAAAGAATTTTAATTCAAATACTGGCTTATTGCGGTATTCTGTATCCAAATAAGCATAGTTTTTTGATTCGCGCTCAAATATATGAAATATATTGCAACTTGTTTAGTAATGCTATCCGGTTTTCTTTTGGCTGCTCCCGCAGAAG # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-2.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTTAAATAATCCCTTATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 2188850-2189388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2188850 37 100.0 33 ..................................... AACAGAGAAAGCTACGGCGCCACCTGAACTAGT 2188920 37 97.3 36 C.................................... TTTTACTGACACTACTATAATAATACTGACACAACA 2188993 37 100.0 35 ..................................... AGGGGTAACTATATGATAACACACTTTTGAAACAA 2189065 37 100.0 35 ..................................... GCTCCTACATAACCTCCATCTGTTCTATATTCTTC 2189137 37 100.0 33 ..................................... AAAGAATTGCTCCCAGATTGCAATCAAAAAGTA 2189207 37 100.0 38 ..................................... TTCAGTGAAAAAGGTTCCCCCCTACCCTGGCATCCAAG 2189282 37 100.0 33 ..................................... TAACTGATACTCAGCAAACATGGAAGAAACAAT 2189352 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 35 ATTACAATTTCATTTACTCCCTAATAGGGATTGAAAC # Left flank : ACTACACCTACATTAAATAGAACATCTTATCTTGTGGAACAGGCATCCCTGCCTGTCACATATTCAACAGGGCAGGCAAGGATGCCTACCCTACAAGAAAATATTAGCTAATCAACAAATTAGCTAATCAACAAAAATGATCTAGCATTAGCATATCTATATAAATATAGATATAGCCCATTATGACGCAAATCTAAATTCCATCCGTTCGCAACATGAGAAATAAGTACACATGTTTCTTTATCTACGTATTTTTGGTCTTCAACTTGGTATCATGCGCGGATGGGTAGGTGTGGGAAAAGAGGCTTGAACGAAAATGGCTGTATCCAAGTCCCCACAAGCATTTGCGGACTCGTTAGAGAAAAACCATCCGCGCACCTTACCCAGAGCGGCTTTCAGCGATTTTGACCTTGCACAACCACCATTTCTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTAAATATATCAAGGCTTTCAGGTGCCCGC # Right flank : CGGTTTTATTATTGTGCCGCGCGTGCTATTTTCATAAAACCCTTGCTATATATAGAATTTTGGAATGTGCAAGTTAGGAGCTAGCTCAAATTTGAAACGAGCAAGGATGCCCATTCCACTTTTATAGAAAATTTAAGCTTTGAACTTCTTGGACTGTTAATGAAAGAATTTGTGCAATTTGTTCGATGCTCATTCCTGTTTGTAGTAGCTGAGATGCTGCGTTTAATCTTGCTTGCCGCTCAGTATCCGCACGTTGCTGTTCGGCATCTGCGCGTTGTTGTTCGGCATTAGCACGTTGCTGTTCAGCGTCAGCACGTTGTTGTTCAGCGTCAGCACGTTGTTGTTCGGCATCTGCGCGTTGTTGTTCACGTTGGTATAATTCGTCGAGTTCTACAGGAGTTACAAACTTGCGACCGTCTGGACGATAAATTTCTAGTGTTGTTGGCGCCAACACAAATTTGATTTGCAAACGTGGACTCACCCAATTGTTTATATTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCATTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 5 2202453-2204807 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2202453 37 100.0 36 ..................................... TTGACCCTTTTCTGAAGCAGCCGCTTGCTCTTTGTA 2202526 37 100.0 35 ..................................... TAATGCTTTAAAGGAGAACAACGAACGTGAAAATA 2202598 37 100.0 34 ..................................... TTAGTAACTTCCCGCTCAACCTTCCAGCCGAGAA 2202669 37 100.0 34 ..................................... AACAATTCAAACCAGCAAGCTACGCTTGTATTTG 2202740 37 100.0 42 ..................................... CCTGTTCTGTTCCACATTTAATTTTGTCAAGCTGGGGTTGTA 2202819 37 100.0 35 ..................................... GGCGCCTTTCTTGCTCAAATAGGGCAATATAAATT 2202891 37 100.0 40 ..................................... TTCAAATTCAAATTGCGCGCGCTCTTTATACAAAATTACA 2202968 37 100.0 38 ..................................... CTGGAAACGGGATTGAGGCAGAAATCAAAAACGCTGAT 2203043 37 100.0 33 ..................................... AAGCTGATTTCGATTCCTGCGAATTTGGCTAAA 2203113 37 100.0 36 ..................................... CCCTTCTGGCGTGACGTTCTAACCATTCGCCACTGC 2203186 37 100.0 33 ..................................... GGCTTTGGTATCTCATCCGGAATAAATACGATT 2203256 37 100.0 37 ..................................... TTTAAATAAAGCGGCATACATCGGCTCTTGAGCTTGC 2203330 37 100.0 35 ..................................... GCTTGTGTTCACGCTGTCTATTACCAATATTCGAT 2203402 37 100.0 36 ..................................... TAATATCTTAGATACTCTATCTTTAATGTTGCCCGG 2203475 37 100.0 41 ..................................... TACCTTTTGTACACAATACAGATACTCACCTGCTACATCAA 2203553 37 100.0 34 ..................................... AACACTAGCTGAATATCTATGTGACTTACTAGGA 2203624 37 100.0 34 ..................................... GTTATCAGCTACCTCTAAGGGTAAGTCCATAGTT 2203695 37 100.0 34 ..................................... TCATAGCTATGTCAACCCTATTTACAAAATAGTT 2203766 37 100.0 35 ..................................... GAGATAGAGGCGCCTCTGGAATTAGAGAGGAGGAA 2203838 37 100.0 34 ..................................... GGCTCAAGTACCGCTACATCAGCTTCCAAAGATA 2203909 37 100.0 34 ..................................... TTTTGAGTCTAACTTCCCTATCACACCTAGAATG 2203980 37 100.0 32 ..................................... TAACTATAGCGGTAGCTCCTCACTACTCAATA 2204049 37 100.0 37 ..................................... AGCCCAGCTAACTACATCTCCTGAGTCATCTACTACG 2204123 37 100.0 39 ..................................... TCCCTACCTGAGAAATAGCATTCTGGGCGCCTTGGGCTA 2204199 37 100.0 34 ..................................... TAATGCCAATGCTATAATCTTCGGCAGCAATAGG 2204270 37 100.0 35 ..................................... AACTAAAGGGGCTACTTATTAGATAACTTCCTGGT 2204342 37 100.0 34 ..................................... GTGAAGTGTATATAGCTGCACTCAAGGTACGCTC 2204413 37 100.0 33 ..................................... CGGGAGCAATTACCATCTACGAACTTCAATCAG 2204483 37 100.0 34 ..................................... GCCCCCGATACTGAGGCAACAAACGATAGAAATA 2204554 37 100.0 35 ..................................... TTTTTTGACTAAGTATGCTGTGCTACGAGCTGATT 2204626 37 100.0 36 ..................................... TCGCTTCGCTTGTACAAAAGTATTCGGGGGCTATTT 2204699 37 100.0 35 ..................................... TAGCTTCGATATCTCAGGTGAAGCACTACTTGAAG 2204771 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 100.0 35 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : ATTGGTGGTGAACCAGTCCGCGACGACTCAATTTTCTTTGCTTAACAGGTGCCTCACATCCTGCAAACTTGTAAGATATAGACTTTTGTCATGCTGAGTAACAAATGTCATGCTGAGGAACGTAAACGGAGTTTTCCCGCAGGTAGCATCTTATAGATTGGCGACTGTTTAAAAGTAAAGTTTTAACTCAATTGCAGTACATATATAATTATCGATAGGGATATGGTAAAACCATATCCCTATCTACGTATTTTGGCTCCTGTACTTGGTATCATGCGCGGAGGGGTAGGTGTGGAAAAAGAGGTGTTAACAAAAATGGCTGTATTCAAGTCCCCACAAGCGTTTGAAGAATTAGCGAAACAAAACCACCCGCGCACCTTACACAGCAAGCGTTTCAGGGATTTTGACCTTGCACAACCACCATTTCTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTAAATATATCAAGGCTTTCAGGCGCCCGCT # Right flank : CGTACACTTTATAAAGTGCATACACATAAGTACTGATTGGGTACTAGTTTGTATATCTAACTTATCATGTTTCTTGTTACACTTGTACACCCTACCGTATTATCCAGTAGTCTTGTTCACAAATCAAATAGGAATCCTATATATATAATTTCGTATTAATAAAATTAAGACGAATGTTACAATATAATAACACTGAATTGACTAATGATTTATGAGTTAGCCAATTCCTGAAGAATACAGAAATCTTTTAGTAGAAATTAAACGGCTCTTCCGTAGGTGTTATGCTGAACTTAAAACTAAAAATCAGAAATTTCCTTTCAAATCAAGGCTTTCAGGCAGTTATAGTCTAGATTGCACACAAAAGGGAGAACGTTAAGACTAATGGCTACTATCTTTGTCCAGTAAAGGTTTCAAGCTTATTTTTAGAGGTGTTTAGCATAACAAGTAAGGAAGAACCAATTAAACAGCGTATTCGTTCTGCTCAATATGAAGCATTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 6 3392801-3391601 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3392800 37 100.0 37 ..................................... ATTATTGGTTTACTCCATTGCGAGTGCCAGGGCGGGC 3392726 37 100.0 34 ..................................... AAGCAATCTCAGGCACATGAATCACAATTACAAC 3392655 37 100.0 40 ..................................... GAGGCGCCACTGCTGCACACATAGGAAACAATCGTACTAA 3392578 37 100.0 34 ..................................... GATATATTGCTACTTAATTCTTTATTAGTAGCAA 3392507 37 100.0 35 ..................................... CAAAAAGAAGTCGAAACGAGAATTAAAGAACTAAA 3392435 37 100.0 38 ..................................... GAAATACTAAACAAACCTAAAAGCGACTTACCGACCGG 3392360 37 100.0 38 ..................................... TCGTTATATCAGTGTCGGCGGTTTGGCTAGTTTAGGAA 3392285 37 100.0 35 ..................................... ACCTCTAAAACCCAGTACACGCAAAGAGTCTAGTG 3392213 37 100.0 35 ..................................... TCAAGTCGTTCGAGTTTATCGAAATAACCTTGAAA 3392141 37 100.0 35 ..................................... TTACAAGGTACTGTTTCTGATTCTGGCTGGAATTG 3392069 37 100.0 37 ..................................... ACTATTATTTGCAATATTAATTTTGGCGCCACAAATC 3391995 37 100.0 33 ..................................... GATTCCAATGCTTCATAAAAAATATTGTTTATT 3391925 37 100.0 37 ..................................... TCGTTGCCACATACGATGAAAACATTAGTAAAATCCG 3391851 37 100.0 34 ..................................... AATTGATAAATAACTACGTAATGTCTGAAGCAAA 3391780 37 100.0 35 ..................................... AATGGTGATTACTACACACAAAGCTTAAATCTAGG 3391708 37 100.0 34 ..................................... ACAACATAATTGCAACTAAAACTAAAACTAAACC 3391637 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 100.0 36 GTTTAAACTATCAATAATCCCTAATAGGGATTGAAAC # Left flank : GAAGATGAGCGCTTTGTTTTCCAAGGAGTACACATGTTATTTGAAGGTAAACCAGACCGTGCTTGGAAAGAAAACGAAACTCGCAAAAACGAACTAGTCTTCATTGGACGTAACCTAGACGAAGCCAAATTAAAACAAGACTTTTTAAGCTGCCTCACCTCCAACTAAATATATCCTTGTGGGGCAAATATTACTCTTGTGGAGCGGCTGTCCCAGCCGCCTCTATAAAACAATACTATTTATATCTACGTATTTTAAACTTAAACCATGTATCAGCGCGGATCGGGGGGTGTAAAAAAATGAGGTTTGACAAAAATGTCTGGACTCCAATCACCACAAAGGTTTCAGCCATTGGAAAATTAAAACGACCCGCGCACCATATCCAGACAGCACTTCAGCCATTTCACGAAAATCAAAATACTGTTTTATGTGTTATGATAAGGAGGTTCGCGGAAATGCACCTTGAAAACCTAATACTACAAGCAGTTGGGGCACCAGCA # Right flank : AAGTGCGATTCGTTGCTGCCCCAATAAATAAGGCAGCCAAAGGAAAACAACTATATATAGTTATCCTTTGAACTTTTTCTTGATGGAGGTGAAAGCCCTCCCCTCTAAAACGAATGGCACGAAAAAAGGCAGAGGGCAGGAGGCAGAGGGCAGAAGGAGGTAAAAGATAAAAGAAATAGGAAATGGCTTGAAGGCTTATCATATATGGCTTTCTACAATATATGTGGTATTCATTTCTAGCGGAAACCTTTGAGACAGACTTTGTAACATTAGAAATGTAACAAAAGAAACAAAACTTGTTACGGTAGAAAAAATCTCTTGTCGAGGGCGCAAAATTTATACCAAGTACAAGAGAATTTTAAAATGCTTACCTCTAAGATACCGAATCGAGTTGAAATCCTCAAGCAAAAGTTTACGACTAGTGCAGGATTGCCTTTTCGAGAACTACTGCCTCAATCAGTGATTCAGCAAATTGTTGACGAACTGAAAATTAAATATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTATCAATAATCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 7 4094776-4094147 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB217478.1 Calothrix sp. PCC 7103 Cal7103DRAFT_CPM.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4094775 36 78.4 37 ...GT.A.....T.-........T....AG....... CAACTGCCATGATGATATCCACGCTTTGTGTTTTTGA A [4094765] 4094701 37 100.0 37 ..................................... TTCCAGATAAATTTTCTTTTAATGGAACTACTTATAC 4094627 37 100.0 40 ..................................... TCCAAACTGAAAATAGTGGAACTAAAAGATTTTGTTTAGT 4094550 37 100.0 34 ..................................... ACCCGCAGTAGGGGGCACACCGCCAACAGTAACC 4094479 37 100.0 37 ..................................... CTATAAGTTCAAGCATGAATTCTGGAATATTGTTGTT 4094405 37 100.0 36 ..................................... TTTCAACATAACCAGCACATCTAATTCTAGATATTC 4094332 37 100.0 37 ..................................... TTTCAGCCATTCTTGCTCTTTACTGAGAATTAACAAA 4094258 37 100.0 38 ..................................... ACTTTATTATTCAATCAGACATATTGCCATAATTTATA 4094183 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 97.6 37 GTTTCAGTCCCGAAGACGGGATTCGTAATATTTAAAG # Left flank : AGGTATAGAAACATTAGAATGGGAAGACCCACGTGTTCCTCAGTTGTTAAGAGACCAACATCGGCAAAATAAATTATATACTCCGAGAACTGTAAACGACCAACTAAAAGAAGCTTGGGGATGTGACTTTTACAAAAGTAAATCATTAATGATATTAAGGTTTGAACAGAATTTTCATGATAACTATATGAGAGGAATAAACATTCACGACACCTTTACACAAATTGGATATCAAACCGTATCTGAATTAATTCAACAACATGCACAAGACCCAGAACAGCAAAAAAATCTACTAAAAGCTTTGAAATCACGTCCAAGCACAGATGCTTACTACCAAGTTGTTTACCGAGTCACAGATTACTACGTACTTCGATGGCTACGGGCTTTAGGTTCAAAAGTTGAAGTTTTATTACCTTGGGACTTACGCCAGCAAATGGCAGGAGAAATTCAAAAGACTTGGAATTTATACGCTAACTTTTAGCTAATGTCCTAAATACCCA # Right flank : CCCGCGCGCTACGACCCTTACAGAGTAAGGATTCTAGACAGGGTTTTCGTGAAGGTCAAAATCGACTCGATTTCAGCCGCGCTTGTTGAGATTTATTTGCAGTTATTGCAAATATGAAAATGCTGTAACTATTATGTTGTCTAGGTTCTGGGCATTTTCGTGAACCTACGGGGGCTTTTTACCCCGCTTCGGTTTACGAAACATCAAGCTGATTGCTTAATCATAAGGCGAGATGTTATTTTTGTCTAGCTTATACTAAAAACGGATAAAATATAAACTTTGTCATGCTGAGTCCTGAACGTAGTGAAGAAACTTGTAGTGGAGTGAAGCATCTATTAAGATTCTACCCTACCCTACCCTTCGGGAAAACTCCGTTTACGGGATATCTTCGATAACGGGAAAACTCCGTTTACGCTACGCTCAGAATGACAGTTCTTATTAAGAATGGCGCCAATAAATGCTACAAATAAAGCGGCACCATTCGGATTATATCATATTTA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGAAGACGGGATTCGTAATATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //