Array 1 69474-66421 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICA01000016.1 Bifidobacterium longum subsp. longum strain 815 815_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 69473 36 100.0 28 .................................... CCTTGTTTCTAGCTTTCCGTTTCATCCT 69409 36 100.0 28 .................................... GTTCAGAAGCAATGTCCCCGCCGAACAT 69345 36 100.0 28 .................................... TTTTGGTCGAACTATCCTGAGACGCGCT 69281 36 100.0 28 .................................... GTAATCGGTCGCGCTTTGCGCCGTGGTA 69217 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 69153 36 100.0 28 .................................... TTCGGTATGCACCGATTTTACCGGTTTC 69089 36 100.0 28 .................................... GTCACTTGGTCGGCGCCCAGGGGTCGAT 69025 36 100.0 28 .................................... CCTTAAGCAGCGTCATCGCGTTCCTCAG 68961 36 100.0 28 .................................... GTTTAGCTAAGAACGTCAGAGTTACAGC 68897 36 100.0 28 .................................... CTACCGTGATTAGCTTCTTCATCTCGTT 68833 36 100.0 28 .................................... AAGTGCCATGGGGGATTAACAGACGAAG 68769 36 100.0 29 .................................... CGCCGAACAATCTTATTCAGCACTGATTG 68704 36 100.0 28 .................................... CTCACGATGGCGATATCCGCTCCCGCCG 68640 36 100.0 29 .................................... CCTGTTTGCCGTAGTTGCCGCTCGGTATT 68575 36 100.0 28 .................................... AGCATGGTGCGCACCGCCGTGTCGGTGA 68511 36 100.0 29 .................................... ATAGAGATGGAATCAATATGGCTTCTATG 68446 36 100.0 28 .................................... TTAACGTAAGAAAGGAGCGAGGATGAAC 68382 36 100.0 28 .................................... CTTTCGATGTCTTGTATCTGGTGACGTT 68318 36 100.0 28 .................................... TCGGTGACCTTCCACCAGGCGGCGACCT 68254 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 68190 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 68126 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 68062 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 67997 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 67933 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 67869 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 67805 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 67741 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 67676 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 67612 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 67548 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 67483 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 67418 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 67354 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 67290 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 67225 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 67161 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 67097 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 67033 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 66969 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 66905 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 66841 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 66776 36 100.0 28 .................................... TCAATTCCGCGTCAACTTTCCAGCACAT 66712 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 66648 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 66584 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 66520 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 66456 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 48 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 32281-32625 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICA01000012.1 Bifidobacterium longum subsp. longum strain 815 815_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 32281 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 32347 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [32353] 32431 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 32491 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [32539] 32539 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 32596 27 81.5 0 C.............C.....C....CG | GC,C [32613,32617] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //