Array 1 79155-81164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOH010000008.1 Providencia rettgeri strain 594m/10B NODE_8_length_146246_cov_28.752198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79155 28 100.0 32 ............................ TACTGGCGACACTGTAGAGGCAGACACTACAT 79215 28 100.0 32 ............................ TTATCGATGAATGCGGCATTGAGGAAGAGAGT 79275 28 100.0 32 ............................ AAATAGTGAGCTAGTAAAAGTAATTTCAGAGA 79335 28 100.0 32 ............................ CGTATCTGCTTTTAAAGATATTCATACTTATC 79395 28 100.0 32 ............................ TTTGTGACGACTTTTTTTGAACTGTTTTTCCC 79455 28 100.0 32 ............................ TGATCCGTCTGTATTAGCGCCAACTCTTCTTA 79515 28 100.0 32 ............................ GATTGAATTCCGCACCCATTCCCCGGCCATCC 79575 28 100.0 32 ............................ TTGCTAGTTTTGGCCTGTTCCTGATTTCCAGC 79635 28 100.0 32 ............................ GTTCTGGACGGGGGATTTCTTCAATAATGCAC 79695 28 100.0 32 ............................ CAAATGCTCGACAGCTAAAAATCAATTAATCC 79755 28 100.0 32 ............................ TGTTCATGGGGATAGTATGTCACCAGTAATTC 79815 28 100.0 32 ............................ AGATACAACAACTTTATTAAATAAGTATTTAA 79875 28 100.0 32 ............................ CCTTACCGGTACCAAACTCAATACGGCATGAA 79935 28 100.0 32 ............................ CATCTCAAAAAACAATTAAAAGAGATGTGGGA 79995 28 100.0 32 ............................ TTCTTGGAATGTTCCTGCTGGAGCGTACCCTG 80055 28 100.0 33 ............................ ATGCTTAGTGAGTTGTAGCCAATCCCTTTATTA 80116 28 100.0 33 ............................ CCCTGAAAATCAATGTGCTGCGTTTACCTTTGA 80177 28 100.0 32 ............................ TCTGGATACTTAGCTTTAAGCATCATAAGAAA 80237 28 100.0 32 ............................ TTTTCGAGTGAGTCCGACGGTGGCAGCATCGC 80297 28 100.0 32 ............................ ATCAAGGTGGGCTGTGGTGAGTTGATTAATAG 80357 28 100.0 32 ............................ TACTTTTGAATTAGAAAAGTAACCGCTAGCCC 80417 28 100.0 32 ............................ GAAGCAAAGTAACATTGCCCGACATAGAAATT 80477 28 100.0 32 ............................ CATTTAACGAAACCACTATCACTATCGAGCAT 80537 28 100.0 32 ............................ TGATTGAATGCTTGTGGCAAATCACACATATC 80597 28 100.0 32 ............................ TTTCGCAGCAAACCAGACTTTGCCCAGCCCAC 80657 28 100.0 32 ............................ TGATTTGATTTTGTTGGCCATGACTTTAAGTT 80717 28 100.0 32 ............................ CGAGGCTTGAAGATAACGGTGTCATCACTGAT 80777 28 100.0 32 ............................ GACCAAACAGGCAATAGCGGTGAATTAGTTGC 80837 28 100.0 32 ............................ AGTAAAACCAGTGCGCAAGATGCCGCGAATTA 80897 28 100.0 32 ............................ TGCCAGTAGAGGCTTTTCGCTTCCTGTCTCGG 80957 28 100.0 32 ............................ GCATTAATTTTAATTCTATGGCCATTAACATT 81017 28 96.4 32 .........................G.. GCAGAATGAGCCACCGATGGATTGGGATGATC 81077 28 100.0 32 ............................ TCTGTTGCGATAATGGCCCGTCTCGCCGACTT 81137 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAACACCCTCCCAAAACAAAGGTATTTTGGTGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89802-90670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOH010000008.1 Providencia rettgeri strain 594m/10B NODE_8_length_146246_cov_28.752198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89802 28 100.0 32 ............................ TTGCAATTCATCCCTCAATATCACTCGATTTG 89862 28 100.0 32 ............................ AGCAGTTCCAGACCCTCGCAGTTTCAAAACTG 89922 28 100.0 32 ............................ TCATTGACTGCAACTGGGTAGCAACGAACGAA 89982 28 100.0 32 ............................ TCATACAGCACGGCAAAAGTATTCTAATCGCT 90042 28 100.0 32 ............................ GTAGGCGTTGGTCTTTTCTTCGCGCTCATACC 90102 28 100.0 32 ............................ ATCATCCGTTATCGCCCAAATCTTATTGGCCC 90162 28 100.0 32 ............................ AAGAATAACTCCGGTAATAAAAAATAAAGAAA 90222 28 100.0 32 ............................ TGCTCCCTCTCATATTCAAGTAGGCAAATATA 90282 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 90342 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 90402 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 90462 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 90522 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 90582 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 90642 28 89.3 0 ...T......A.........T....... | G [90668] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAAGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //