Array 1 65644-63980 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65643 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65582 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65521 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65460 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65393 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 65332 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 65271 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 65210 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 65149 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 65088 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 65027 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64966 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64905 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64844 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64783 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64722 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64661 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64600 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64539 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64375 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64314 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64253 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64192 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64131 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64070 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64009 29 96.6 0 A............................ | A [63982] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83023-81899 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWN01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 19_18 NODE_13_length_136564_cov_13.1437_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83022 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82961 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82900 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82839 29 100.0 31 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTA 82779 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82718 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82657 29 100.0 31 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCA 82597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82536 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82475 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82231 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82170 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82109 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 82048 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81987 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81926 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //