Array 1 428070-427502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009759.1 Yersinia pseudotuberculosis strain EP2/+ chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 428069 28 100.0 32 ............................ CGCCGCCACCGTGCCTGGAGTCGTGCCCACAT 428009 28 100.0 32 ............................ TTTTTCTACGTCCTTATCGGTAAACAAATCAG 427949 28 100.0 32 ............................ ATCCAGAAAGCCCACTACGGCTGGCAATGATT 427889 28 100.0 32 ............................ TGCTCAAACGTACATGACAGTTCAAATACTGG 427829 28 100.0 32 ............................ ACTTGCCGCCATCATTGAATTGAATCAACAAT 427769 28 100.0 32 ............................ GGTTGAGGGTCGGAGACGAAAGAAAGAAACAG 427709 28 100.0 32 ............................ GTCACGCAGAACCTATCACAATGCGGAATGGG 427649 28 100.0 32 ............................ GTCTTCATCAACGTGATAAATCACTTCAGCCT 427589 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 427529 27 89.3 0 .....................CC.-... | T [427504] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4209713-4211003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009759.1 Yersinia pseudotuberculosis strain EP2/+ chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4209713 28 100.0 32 ............................ TCATGGCAGCGGGTGACGTTCGCAAGAAAATT 4209773 28 100.0 33 ............................ ATAGGTTGAGGTCACGCTCAGGTACTGATTAAC 4209834 28 100.0 32 ............................ TTGCACTGCTCCATCGATTGCATTGGAGTAAC 4209894 28 100.0 32 ............................ AACGAAGAGGCAGATGATGGCCGATGATAATA 4209954 28 100.0 32 ............................ GCGCAACGTCCGTTATTTCGGTTACAGGCGAG 4210014 28 100.0 32 ............................ GGCAGAACTTGCTTAACATGCTGTCCTTGCCC 4210074 28 100.0 32 ............................ AGAAAACGACGAACGAAAGCCAGTAGCAGTTT 4210134 28 100.0 32 ............................ ACAAGCCTTAGCTACTTCGGGAATCCCTACGC 4210194 28 100.0 32 ............................ TTGATCTGGACGCCGCTCGACAGCCAGGGCCA 4210254 28 100.0 32 ............................ TTTCAGCCACATACGGCGAAAGGATACAGCAT 4210314 28 100.0 32 ............................ CTGATTATGTATGCATGGCCATAATGAGATAC 4210374 28 100.0 32 ............................ ATTCTCAGTGGTCGCAAGACGCAGACTCGCCG 4210434 28 100.0 33 ............................ CAGAAGCATTGATATCTTCGGAATGAAGCTTTC 4210495 28 100.0 32 ............................ TTGATGCATAGACAATTCATGGATAGTAAGCT 4210555 28 100.0 32 ............................ ATCGCTAACCGACGCATCATAAATCTTAGACG 4210615 28 100.0 32 ............................ AACTGAAGTCGATGTTATCCAAGCTAAATATA 4210675 28 100.0 32 ............................ GGCGCACGATTAAACGAAGCGCTGGCCCTGAC 4210735 28 100.0 32 ............................ GAACGAGAGGCGATATGCCAAATCCAAAAAAT 4210795 28 100.0 32 ............................ GACGAATGGCCCGGCATCACCCGTTGGCCTGC 4210855 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 4210915 28 100.0 33 ............................ GCCCAGGCGGCACTCAACGCCAGGGCGGGGACG 4210976 27 85.7 0 ...................-A.A.C... | T [4211000] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAATGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //