Array 1 2953-2729 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUEP01000034.1 Bacillus pseudomycoides strain AFS003288 AFS003288_96_E9_Contig34_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2952 29 100.0 37 ............................. GAAATTTTGGATAGGAACTGAAAGCGAACGTTTCAAT 2886 29 100.0 35 ............................. GCGGCTGGAGTGTTTAAACCTATAGGTATTGTAAG 2822 29 100.0 36 ............................. AAGTCAGAAATGCGAAAATGATTTGAACGCGTTATA 2757 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 36 GTTTTGAATAAACTATGTAGAATGTGAAT # Left flank : ATTAATATGGAATTTCTTGCACTAGCGGGTGAAGATAAAAATATAATTTTAAGAAACTGGTCTTACTATCAGTTGCAACAATTTGTAGAGGATAAAGCTAAGCGAGAAGGAATCGATGTGAAGTATGTAGATCCATACCGTACAAGTCAAATGTGCTCAAAATGTAGGAATTATGAACCAGGACAAAGGGAATCACAGGAAAAGTTTATTTGTAAATCATGTCATTTGGAAATCAATGCAGACTATAATGCATCACAAAATATTGCTCATAGTACAAAATATATTACAAATAAAAATCAAAGTGAGTATTTTAAAAAATTGCAGCATACTACCGAATAGAGGATGTTAATGCAAAGTATTGATATCAATGGAATTGTAGGTATTTTATGAGAGAAGTAAAAATCTTATTAGAGGTTTGCTGCAAAAAAGGAAATTTACCTTTGAATCATGAAGTATATAAATAGTGCTACAATCATGTTCTTTGAAAACATGTAAATGGG # Right flank : TTATGTTCAATGCGCTTAAGAAGCAAGTTTAAAGTGGTTATAAGATACATTTAAAAGCCTGTTTTAACATGGCTAGGGCGATTCAGTGTCCTAAGGCGGAGGGATTCTTCCACTCACGCAAGGGTTAACCCTGGATATTATGTAACCATCCAGGCATTCTATATAGTTATTTAATCAAAAGCTATCTTATTGTAGATAGCTTTTTTATTAGTTCAAAACTTGTAAAATAGTTAGTTAAATATTTATATAGGGGTAGGACGCACATTTTAACGTTTTTATACGCTAAGGGATTCTCAAAACTTCATAACACGAGTTGAATTGAGGATTTGATTTAAAGATGAGTTTTGAGACACTATTTAAGCTCTTTTCAGCACCTTTTACATTTGTCTCAAATACCTATTGATGATATCGCTTAGAGTAGTAAAATCACCGTGTTCTCATGTCGAATTTTTCTTAGCGTATATTTTCGTTAAAATGTTGGCGGTACGCCTAAATATAAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATAAACTATGTAGAATGTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10165-8702 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUEP01000017.1 Bacillus pseudomycoides strain AFS003288 AFS003288_96_E9_Contig17_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10164 29 100.0 36 ............................. ATGCTAGTATTACTCGTTGTAGTTTTATTCGATTGT 10099 29 100.0 36 ............................. CAAATTTAGTGAAGTGTTAGATGAAAGGCATATTTT 10034 29 100.0 36 ............................. CCTACTTGCTCAAGCAATCCTTTGTCTCCTAGCAGT 9969 29 100.0 36 ............................. CTGTAATTTCTTTTTCTTTTTTTAATACAATCACCT 9904 29 100.0 36 ............................. TATCAACTAACGGATTCACTGTATCAGACATTCGAA 9839 29 100.0 36 ............................. GAAAGAGAAGTTCTAGATGGGTTTGAAAGCTTATTA 9774 29 100.0 36 ............................. TGATACACCGTATTTTTCGTTGGTCACAGATATGAG 9709 29 100.0 38 ............................. ATCTTCTATGATAACCAACATATAAACGAACGACTCCA 9642 29 100.0 36 ............................. ACTGAAAGAGCCAAAAAGTACCAAGAGGTATTCTTT 9577 29 100.0 37 ............................. TATTATGTTTTTTATCATTAGGATCAGTGACTAATTC 9511 29 100.0 36 ............................. AAGAGTTGATCCATAAAGGTTGCATTGTTTCCCCAG 9446 29 100.0 36 ............................. TGTAGTCCCTAACCTTGCACCTCTTGAGTGTATTGA 9381 29 100.0 36 ............................. ACGCGACTTGTAATCACGTAGATATTACCTTTTAAA 9316 29 100.0 35 ............................. CCGCCAGCTCCTCCGCCCTCATTTGTAGCAACATA 9252 29 100.0 36 ............................. CTCTATTTGGAAGCACGGGCAATCGGTGCAGAGGAA 9187 29 100.0 36 ............................. GAGAGATGAAGACATTGCAGTGATACCTCTAATAAG 9122 29 96.6 36 ....................T........ TTCTTTTCCCAATTCGATACAGAAGCTGAGCTAAAA 9057 29 100.0 35 ............................. GATTTATCTGTTGCTGTAACTGTTACTTGAATATC 8993 29 96.6 37 ....................T........ CCTACTCCACCCGCGAACCCGATCTTATAAGCGAAGA 8927 29 96.6 36 ...............C............. TATGTTTGGGCGGGGGGAGCACCACCTAATTTTGAT 8862 29 96.6 36 ....................T........ TGATCTATTACTACAACATTTCCATAGCCCCCGAAT 8797 29 93.1 38 ..........T.........T........ AGGGATATGAATTTAGACAAACGTTTTGAGGTGTTAGA 8730 29 86.2 0 .......................A.G.GC | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 98.5 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTTATTGGAGAAGATGCTTATAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTAGACACAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCTGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTTCTTTTGAGCTTTATTTCGCTAAGTGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGTCAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGGTGAAAATATCAG # Right flank : GCCTATCCAATATAATTTATTATTTGATTTATTTAATTACTTTAATCTTTAGATAGCTTCTGTTCATGTTTAAACATAAAATGTGAGGTGTACTCTTTTTCAATTTCAAAGCCACACTCAAAAGAGGGTATGCAGCAAGAAAAATGGCATATACAGTACTATATTTCATGTTGCAAGCAAAGTAAAAGAACCCTACACAAAGCAGGACTCTCTTACAAAGGTATTCACTGGCAAATGACTTCACCAAAGGAATTGAGTCTCGACCACTTAATTCCTTTTTTATGTTATAACAGAAAAATAGAAATTTGCAATATATGTAGTAAGAATATACTTTTCACTATTTCACATCAATAATGTCATTGAACTTAAAAGTAATTTTATTATAAAATGCGTCAGTACATATTACTGAATTATTCAAAGGATCTATGTCCGTTACAGTTATATAGCTTGTAAGTAGATGGCCATCTTCATAATAAGTAATTAATATTTCTTCTTCTGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 25468-25169 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUEP01000017.1 Bacillus pseudomycoides strain AFS003288 AFS003288_96_E9_Contig17_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 25467 35 97.1 31 ...............G................... CAATAACTAAGCATTTGAGACTTGCAACGAG 25401 35 91.4 31 .T...........TT.................... CTTGAAAATGAACATAATTAGCAAGATTACG 25335 35 100.0 31 ................................... AAAACCTAATGTATTTATCGAGCATGTAGAG 25269 35 100.0 31 ................................... AATGAATTTCGCCATTGCAACTTTCCCCATG 25203 35 85.7 0 ............G....T.......A.TT...... | ========== ====== ====== ====== =================================== =============================== ================== 5 35 94.8 31 TCATAGTTCCATTAAAGCCATTGCTGTACTATGAT # Left flank : ACAATCTAAAAACTCTCCACTATATCTACAAGAGGCACAACTTGGTGAATTTCTGTTTAATGGTTCTCAAAAAAGTGGCTATGTTAGTAAAGGTTCACCTGACTTTTTCCTAGCACTACAACGTGAAGCTTCTAACATTTCTACTGGAAAGGCTTTTTACATTAATAAGGGGAAAGTTATAGAAGTAAAAATTCTTGGTGCAGATCAAGGAATAGGAATTATCGGTCATTTTAAAGGATTAGATAAAGGTAAGTTTATGACAGCAACATATAATAATAGTGAAGGCATATGGAATTTCTCGACATACCAGACTGATCTTGAAACAGGGAACGCAAAAGAAATTGATTCAAAAATGCTTCCTCTTGAAGAAGGGAAAGGGTATTTAATGAAAAATTTTGATATGGCATTTTAAAAAAGGAGAACTCAAAATATATGCTCAATGTTCAAAATAATTCGGTTTGATGATGCAGGCTTTTTTTCAAAACCATATAACTCCAAAA # Right flank : ACGCATTCAAAAAAGCCTGTAATATCAACGCTTACAGGCTTCTTGTTTTTTATTTTTTAACCTATATAGGATGAGTTATCCTACATTTTGTTGTTTTTCATAAAAAAGGCCTTAAATATCTCTACTTATTATCTAGTATTCTAGGCGAAAAGAGACATAAAAATACGGTAAACAAAATAAAATTGTTTACCGTTTTAACATTAATTGATTTTTATCTCGTGAAAATTTCTACGTGTTTCTTTTCTTACTAACCTTAAATCTCCTAAAACACCCACCTCATATTTTTCTAAATCCTCAATTGTTTTAAGACTATAACGATATTCATTCTGTTTTGATGGCTTATTTACATCTTTAAAATTAAGACGGTCAGAATCGATATCGAGAGTACCAAAGTATAAAAAACGATCTTCATCACCTTTTACGAGACGTACTAAATCATAAGGGTATAAACTAAATTTAAACGTAAAGCTGTTATCTAGTGTTAGCCATTGCTCATAACC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCATAGTTCCATTAAAGCCATTGCTGTACTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //