Array 1 2273-2434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2273 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 2339 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 2405 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCACAGGACGTGCCTGTAAAACAAAACTTGTGCATTTGAATAACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9938-11298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9938 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 10003 30 100.0 36 .............................. TTGGGTGGCGCTGTCGCGCACTCCCTTGACCCTCAA 10069 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 10136 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 10204 30 100.0 37 .............................. CTTCAAATGGGATGACTCTAACTATATCAGGATTTCA 10271 30 100.0 35 .............................. ATTGAAATGATATGCGACTGGAAAGCTGCGGTGAT 10336 30 100.0 36 .............................. CGCTTTCAAACGCCATTAAATCGTCACCTCCTCGGT 10402 30 100.0 37 .............................. TCTGGAACACAAATGAAAGGAGTAATAACTGGATGAA 10469 30 100.0 38 .............................. TCCGTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 10537 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 10602 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 10669 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 10735 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 10802 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 10869 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 10934 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 11000 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 11067 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 11133 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 11199 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 11268 30 76.7 0 ......GC...G.T...G.AA......... | C [11279] ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 355990-355293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355989 30 100.0 36 .............................. CGAGGCTATTTGGAACAGCAGAAAGCCGGAGGCAAA 355923 30 100.0 37 .............................. AAAGCAGCTCGGCTAAAATAAACATGGTTCGCAAAAT 355856 30 100.0 37 .............................. GCTTCCAAATCACAAAAAGAAGTTTCAGCAAACAACT 355789 30 100.0 35 .............................. ATTGACGTAATGCTTTTTCTAGTATGTTTTTAGTC 355724 30 100.0 35 .............................. TTGGCGAGGTCAAGTTCCGTTACAAATCCGTAACC 355659 30 100.0 37 .............................. TTACTTTAGCTGAGTACAAGGAAATTACAGGAGAAGA 355592 30 100.0 37 .............................. CAGCTATCTTGAAAGGTGATTGGAAAGGCGCTTGGGA 355525 30 100.0 36 .............................. CATTTTTGGCAGATGATATTACACTTTTTAATATAT 355459 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 355391 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 355322 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCATTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAACTTCGCTGACGCTTTTTGCTGCCACTTTTTGAATGGGTTCAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1052520-1054424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1052520 30 100.0 37 .............................. TGCTGATAATGCGTTAATTATTGACACGAAAAAATCT 1052587 30 100.0 36 .............................. ATCGCGGCCGTAGATGATGTGTACGGAACGTTTCAC 1052653 30 100.0 37 .............................. GCAACGATGAACTCTAATGTATCGTCGTTGCTGTCTC 1052720 30 100.0 38 .............................. CATTTTCCGCTTGGTGAAGCACTAGAAGAGATGCGCAC 1052788 30 100.0 37 .............................. ACTTGGTTGAAAAACCTACTGATGAAAAGATACGAAA 1052855 30 100.0 37 .............................. TGTTTTCTTGAGGTTTTTCTAATGTTAACTGTAAAAT 1052922 30 100.0 36 .............................. TCAGTTGTTTCCTGCTGTTTTTCTTGTGTATCCCCC 1052988 30 100.0 36 .............................. CCACGATGTCATGACATTGTATAGACGTTCCAGATA 1053054 30 100.0 36 .............................. TGTTTTTTCGGATAAGGATTTTGAGAGAGTATTAGA 1053120 30 100.0 38 .............................. CTAATCTCGAACCAGTCCATAAAATAGTCATCGATCTC 1053188 30 100.0 37 .............................. CGGCTATCAAGCGAGAAATAAGCCTCATCGACAATCA 1053255 30 100.0 36 .............................. AGGATTGGAGAACATGCTGACCAACATGTTCGTCCA 1053321 30 100.0 36 .............................. CTGTAGGTATGCGTTGTTCAACATAAGTAGGGAAAG 1053387 30 100.0 36 .............................. AGTCAACAGTTTCAAGTAATTCTGTTTGCTTTCCAG 1053453 30 100.0 39 .............................. TCAGAACTAGCGTAGAGGATAGAACAGGTAGCTATCGCC 1053522 30 100.0 39 .............................. ACGCACCTAGATCACTTATTACCTTATCTGAACTTCGAT 1053591 30 100.0 38 .............................. TGAAAAGTATATAAAGCATTTTAATATTGGAGGCGATT 1053659 30 100.0 37 .............................. TCCGAACGATAGCTTTCCGACACTTTGCCGATGGCAC 1053726 30 100.0 36 .............................. TCCCGCAGGAAACATCTCCTTTGATGAGAGTTTAAA 1053792 30 100.0 35 .............................. AAGGAATATTCGTTCGAATCGTTTTTGCCGCGTGA 1053857 30 96.7 35 ....A......................... TGGTAATATGAAAGTATGGGTAGATCAAGATTAGA 1053922 30 100.0 37 .............................. AACAATGCGGAAGTGATTCCGATTCCGACGCGTCCTG 1053989 30 100.0 38 .............................. ACCGATAACGGTGGAAGTGCTGTTTCAACTATCGCAGA 1054057 30 100.0 39 .............................. TCCTTCCTCATAAAACCCTATACCGAAACGTATGGACGG 1054126 30 100.0 38 .............................. TATCTTTGAGCATGCTTTTCACTTCCCGTTTGTCCGCT 1054194 30 96.7 36 .............................T CTTTTTCATTCATGAGTATTCCCCCTTCTTTGTTTA 1054260 30 96.7 39 .............................T TCAGCCGCCCCGTATCCATATGCTCGTACCATTGGATTC 1054329 30 96.7 36 .............................T TTGTGCGAATCATAAAAAACCCCACTCGTCCGAGTA 1054395 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTAAATAGCGGCTATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CGTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCCTGTTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2529363-2531597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2529363 30 100.0 39 .............................. CTCAACGATGAAGAATCCATACTATAATATCTGCAGATA 2529432 30 100.0 36 .............................. TTGTGTGAAGTTCTTTTTCTTCCCCTGTTGTTGAAT 2529498 30 100.0 35 .............................. TCGTACCATTCGACTTTGGTGTATTCGTTGTTGTC 2529563 30 100.0 35 .............................. ATGCGAGAAACAAATCACTTTCTCCAAACAAAAAA 2529628 30 100.0 35 .............................. TCTTTCCACGCTAATGATAAAAACCAAGCCATGAT 2529693 30 100.0 36 .............................. ATGGCCTTCACTGCGGAACGCGGCAATTCGAACCGT 2529759 30 100.0 37 .............................. AATGAAAGAAAACAAAGAAAAAGTCATTGACGTTTCT 2529826 30 100.0 35 .............................. GAGTCTTTAGTTAGGACGTTTTCTGATTCGGAAAC 2529891 30 100.0 38 .............................. CGCTACATATCTATCGAAAGGAGGGACGAGTATGGCAC 2529959 30 100.0 38 .............................. TGGAAAAGGAAGTCGGGCATTGGAAAGAGCTTTTCGAA 2530027 30 100.0 36 .............................. TTGGATATCCATACTTTTCTATCATGGCATGCTTCG 2530093 30 100.0 36 .............................. AGAACACCAGCAATAAATGATTCCCCCGGCGAACAA 2530159 30 100.0 38 .............................. AAGCTGGCAGCGTTCGGCAGGCGCTCCGCCTGTCGAGG 2530227 30 100.0 37 .............................. CGTCGAATTCGAATTTTTCGCCGTAAAAGTCTGTGCC 2530294 30 100.0 36 .............................. AAAGGTGGCCAAGGTGTTTTGAAGCGCGGCACCGTG 2530360 30 100.0 37 .............................. ACAAAGAGCTTGAAAAAATTCCGGTCCGCATCGACGA 2530427 30 100.0 37 .............................. TTTTCTTCTCGGAGCCTTTTCTTTGCGAGCCGTATTG 2530494 30 100.0 37 .............................. CACGATGAAACCACTAGGAATTGTCCGCAAAATCGAC 2530561 30 100.0 35 .............................. ATCGGTCTAACCGATAAACTAGTACAATATCGATA 2530626 30 96.7 37 .T............................ GAACTGTATGCTATATCTTTTTCAATATGGCTGAACA 2530693 30 96.7 38 .T............................ AATGCCCCGACTTGCACGCGATAAACCTTCCCTTGTGT 2530761 30 96.7 35 .T............................ TGTAGGGAAAGCCAGTGGATGGATCGCGTCTATTT 2530826 30 96.7 38 .T............................ AACAAGTAAATATGAATGAACACCAAGCTGCAGCTCTT 2530894 30 96.7 39 .T............................ ACGATAGAATCATGCTTCTATCTAATGAAATGATATTTT 2530963 30 100.0 36 .............................. ACATTTGCAAGGTGGGAAAATGAAGAAAAGTATAAG 2531029 30 100.0 37 .............................. GAGCCGAGTCGCCGCGTTAGTTTGGGGTTGAGCTAAT 2531096 30 100.0 37 .............................. GGCATCTCCCTCGAGGAACTAGCCGCCGCAACTGAAG 2531163 30 100.0 39 .............................. TGGAAGAAAAAGATTTCGAAAATAAAAATAAATAAGGGC 2531232 30 100.0 37 .............................. AATGGCTAGCGGTCGGGAAGCGTGCCGGCCTTTCTTT 2531299 30 100.0 36 .............................. CTCACACCCTACCAACACCTTATCCACAAACTTATC 2531365 30 96.7 38 C............................. ATATATCGAACCTTCACCAACATAGCTCGCTGCGTTGT 2531433 30 96.7 37 A............................. TCGGCTTGCCATCATCAGCGCGTAGGTCGCCATCCCA 2531500 30 93.3 38 C...G......................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTTGGA 2531568 30 86.7 0 .T..................A....A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.7 37 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : GGTGCCGTGTTGATCGAAATCGATGAAAAATGGATGTCAGGGCGCAAATACTTGGATATGGCTGAATATTGGAAGTGGCGGAAAACGAAAGAGCAAGGAGTCCGATCGGTGAATCAGGAGGCTCCGGCGATCAAGAGAGTGGGATAACCTCTACGCCGTGTCAAGGAGAACGTGGAATACCGGAGCGAAGTGAGGATATGCCGCGAAAGCTCCTTGACACGCCTGTTCCTTGACAACATGATCATTTGTCCGGGAAGGCGACCGGCAGGGAGACTTTCCGGTCTTACCTACCATACGTCAAGTCATCAGGTCCATGTTGTCTATCAAAGGGGAATTTACACAATAATTTGGACTTGACCCTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCGACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATCGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATATTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2541048-2543344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2541048 30 100.0 37 .............................. TCAAAGGATACAAATTGAGATGCTTGTTGCAGTACCG 2541115 30 100.0 38 .............................. CACTCACAATGAGCACCCTAAAAATTCAAGTATTCGTG 2541183 30 100.0 38 .............................. TATATAGATCAAACAACAACTCTCTTGGGAGTTCGTTT 2541251 30 100.0 37 .............................. TGGCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 2541318 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 2541385 30 100.0 37 .............................. AAGGCGTAAGAAAAGAACACTGATCATTAAAATTATT 2541452 30 100.0 35 .............................. TGATTCTTATACCACTTTGAAAAAGCGACAGAATC 2541517 30 100.0 38 .............................. ACACCAGGCATCTTGAAGACCGTGACACTCTTCGTCCC 2541585 30 100.0 35 .............................. ATGACGCAAACCAACGCCACTAATTGCGTCCTCGC 2541650 30 100.0 35 .............................. TTTTCGTTTTGTTTCCGCAGCGAATGAACGTTTAT 2541715 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 2541781 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 2541848 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 2541914 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 2541983 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 2542050 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 2542115 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 2542183 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 2542251 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 2542318 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 2542384 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 2542451 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 2542518 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 2542586 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 2542654 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 2542721 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 2542788 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 2542854 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 2542919 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 2542984 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 2543050 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 2543117 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 2543182 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 2543248 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 2543315 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGCATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2552581-2552940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2552581 30 100.0 37 .............................. TCATCTTACTAGAGACAAAGAAGCTTTCCACGTCGGA 2552648 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 2552713 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 2552778 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 2552844 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 2552911 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATTAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCTAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACAGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 3859207-3859368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3859207 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 3859273 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 3859339 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3866884-3867975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016916.1 Parageobacillus thermoglucosidasius strain TM242 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3866884 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 3866949 30 100.0 35 .............................. TTGGGTGGCGCTGTCGCGCACTCCTTGACCCTCAA 3867014 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 3867081 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 3867149 30 100.0 35 .............................. TTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 3867214 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 3867279 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 3867346 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 3867412 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 3867479 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 3867546 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 3867611 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 3867677 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 3867744 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 3867810 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 3867876 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 3867945 30 76.7 0 ......GC...G.T...G.AA......... | C [3867956] ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.0 36 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : GGCCTGCCGAGCTTGACAGTGGTTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAAATTGATATCCCGCTTCATCGGCAATTTTATACTCAAATGAACCATGATCATAATCCCAATTCCCGCCAATGGTAAAGCCAAGCGGCTTTAACAATTGGCCCCAATGGAAAGAGAGGAAACGTTTCCCCTTCCAACCGTGAAGGATATTCCGATCATCCAAAACACCCTCTTTTTCCACCATTGTTCCCCTCTCCGCGCTTTTTATATGTTTGTTAGGAAATATGGCCTGCTACATAACGCCCCACCGCGGTCAAGGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGACCGACGACATCCCCTTTTGCTGCTTTCCCCAACTTCCACCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATATACTAAACATAGCTTGCTTTCGAAAAAAGCTGATATACCAACGCTTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //