Array 1 2024-1811 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV817116.1 Corynebacterium sp. HMSC078C09 Scaffold394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2023 29 100.0 32 ............................. CAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGT 1962 29 100.0 32 ............................. CGAGGACACCCAAGCGCGTGACAGGTCGTCAA 1901 29 100.0 32 ............................. TCTCGGGTCACTGACTTCGGGTCAAGCAACAT 1840 29 86.2 0 ...T..........T.........A..A. | C [1814] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTACGCCCCACGCACGTGGGGATAGCTCG # Left flank : ATGAGCCCAAACTCGCCGCCCCCGTAAGAGCCGATCTTCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCAAAGTCCAGAGCATTCGGCGCGCCACCAATAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCTTCCACAAGGCCATTCCACGCGGAGACAATGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGAAGAACTGCACGGCGGCGTTGATGTAGCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACTCGGGGGCGTCTGCGAGGTACACGGGTAACGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCGCAGCACGTAGGGGTTACTACATTTGCGGTGCTCCCCGCGTGTGCGGGGATGAGCCCAACTAGGCCCGCGCCCTCACACCACTCGCTAAGTGCTCCCCACCTGACCGCGGAAGCGCTAGGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGA # Right flank : GTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGATCTCATCGGTGTGGTACTCAACGGCATTATCGGTGGCACGATTGCACGCCGTAGGGAATTCGACATTATTGGCTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCTGGCGGCATGATCCGTGACATGCTGATCGCCAGCGGTCCGGCTGCGGCTATCTCTGATCCGCTGTATCTCACGCTGGCGTGTGTGGGCGCGCTCATTGCTTTCTTGACGGAC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGCCCCACGCACGTGGGGATAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 4194-2088 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV817116.1 Corynebacterium sp. HMSC078C09 Scaffold394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4193 29 96.6 32 N............................ CAATCAGCAACAACCTGCAGGCCAAAGCGCAG 4132 29 100.0 32 ............................. CGAAGCCTTCATCCGCTGCCGCGCCGCACGCA 4071 29 100.0 32 ............................. GAAGGTGTCGCCGCCTGATTTGAGGTTGATGT 4010 29 100.0 32 ............................. CGATTCAGCCGGAACCTATGTGGGACGTCTTC 3949 29 100.0 32 ............................. ATCCGCATCTCGGGAGAAGTCACCCTGCCGGA 3888 29 96.6 32 ............................G GGCTGACCCGGTGCGTCGTAGTCGTACACGCG 3827 29 96.6 32 ............................T AAAGGGTGGTGGCTTTTAGTTTTGAGGAGGCT 3766 29 100.0 32 ............................. TGCGCGGTCATGTTCTGAATATCGCCCAGGTC 3705 29 100.0 32 ............................. ATAGCCGGCGTCCTTGCCGCTCCATGCGGACT 3644 29 96.6 32 ............................G GCCACCGGAACCTCAGTGGAGTCATTCACCGT 3583 29 96.6 32 ............................G TCCTACCACCCGCCCCAAAGACAGACGACAGC 3522 29 96.6 32 ............................G CCATCATCCTCCGCGACAAACTCACCCGATAC 3461 29 100.0 32 ............................. CACAAGGAGGTAAGCGCTAATGGCACGCCACT 3400 29 100.0 32 ............................. TATCCAGTGTCGTTTGAGGACGTATTCGACGT 3339 29 100.0 32 ............................. CCACCACACCACCAACGACTTCAAGGTTGTAA 3278 29 100.0 32 ............................. ACGGCTTTACCGCTACTTCCGCCCCCGGAGAC 3217 29 100.0 32 ............................. CACAGCAGGGGAGCAGTCGTGAGATGGGAGAG 3156 29 100.0 32 ............................. GCAGTAGAGCAAGTCAACGCCCATACTCGGGC 3095 29 100.0 32 ............................. ACCGCCATCTTCCGCTGCTCCGCCGGTTCTAC 3034 29 96.6 33 ............................A GGACGGGGCGGGCCGCTTCATTGACACGGTTGG 2972 29 100.0 32 ............................. AAGACACTCCCTGGGAACTGGGATGCGCTGCC 2911 29 96.6 32 ............................G TGGGTTCCCTACATGCGGACGGCTAATGGCTC 2850 29 100.0 32 ............................. CATTAGCCTCCAGATACGCCTGGGCATAAGCA 2789 29 96.6 32 ............................G AGCAGGTCGTATGCCTGCGTGCCGACAAGCAG 2728 29 96.6 32 ............................G GGTGAGCTACTCGGGTTGCAGCGTTCCAAGGT 2667 29 100.0 32 ............................. GGCGGCGAGGGCAAGAAGGGCCGTATTTTCGT 2606 29 100.0 33 ............................. TCTTCATCCTCGGCCTCAGGCCACAGGTCGATC 2544 29 96.6 32 ..........G.................. AAACTCGCCGCCCCCGTAAGAGCCGATCTTCC 2483 29 96.6 32 ............................G CAAAGTCCAGAGCATTCGGCGCGCCACCAATA 2422 29 96.6 32 ............................G CCTTCCACAAGGCCATTCCACGCGGAGACAAT 2361 29 96.6 32 ............................G CGAAGAACTGCACGGCGGCGTTGATGTAGCAG 2300 29 100.0 33 ............................. CACTCGGGGGCGTCTGCGAGGTACACGGGTAAC 2238 29 96.6 32 ............................G CTGCGCAGCACGTAGGGGTTACTACATTTGCG 2177 29 96.6 32 ..............T.............. AACTAGGCCCGCGCCCTCACACCACTCGCTAA 2116 29 72.4 0 .........A.C...C..C...A.C..TA | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CGTGCTCCCCGCGTGAGCGGGGATGAGCCTGGTCAACCCTCACTAGCGACGGCGCAAACATGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGCGAACCGGGCAGTATGTGGCTAACGATCGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCATACGGATGAGGGAAGAGCTTATCGCCTGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCATACGGATGAGGGAAGAGCTTATCGCCTGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGTAGCTAACTTCTGGCAGATCACTAATATCCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCCTCAGCCTCCCCAGCGCTCAAATCAAACTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGAGTACGCCCCACGCACGTGGGGATAGCTCGCAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGTGTACGCCCCACGCACGTGGGGATAGCTCGCGAGGACACCCAAGCGCGTGACAGGTCGTCAAGTACGCCCCACGCACGTGGGGATAGCTCGTCTCGGGTCACTGACTTCGGGTCAAGCAACATGTATGCCCCACGCATGTGGGGATAACCTAGGTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6889-4298 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV817116.1 Corynebacterium sp. HMSC078C09 Scaffold394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6888 29 100.0 32 ............................. TTTAGCTGTAAATTCTTCCTGCACACCGTCAC 6827 29 96.6 32 ............................C ATCGTGCGCGCCGGTGCCCTGCTAGCGTCCTC 6766 29 96.6 32 ............................C GTTTCAGGCCGGGCATCGTACTGCCAATCGCC 6705 29 96.6 32 ............................C CTAATACCGGGCGGCAGATGACCCTCCACGAT 6644 29 96.6 32 ............................C CCCGGCTACTCCGAGACGGGCGCGAAGATTCA 6583 29 100.0 32 ............................. GAAGCCTGGTACGGCAGCAAGAAAGTGTATTC 6522 29 100.0 31 ............................. CTCTTCCTGATTCATCGCGCCCCCTTATTTA 6462 29 96.6 32 ............................C GAGCGGCGCCGACATAAATACCAAGCCCAGAA 6401 29 100.0 32 ............................. TTGACGATTTGTGTTGTGCCACCCACTGGGGT 6340 29 96.6 32 ............................C CGGAGGCCGGAACATTGTTTGGCGTTGACGTT 6279 29 100.0 32 ............................. CTGCTGGCAAGAAGCTCAACCTTGCTGCGCTT 6218 29 96.6 32 ............................C AACCCGGGGCCTTTCGGTTCCTGGCGTTGGTT 6157 29 96.6 32 ............................C AGTTTGATGAGTGCGTCGAGGAATGCCGGCTG 6096 29 100.0 32 ............................. GTTTGCACCAAACCGGTTTCCCCATCGACTAG 6035 29 96.6 32 ............................T AGCTGAGCTGTTAGCAGAGTTCGCGGCACGTA 5974 29 96.6 33 ............................A GTTTGGGGGTCGCCGGGACGTCTGGGTGGCGCT 5912 29 96.6 32 ............................C CCGGCGCGTGGCGGTGAGGCTTCCTCCGTCGG 5851 29 96.6 32 ............................C GCTCGGCCAGTACAAGCTGAGTGACGTTGGGG 5790 29 100.0 32 ............................. ATGGCTACAGCCCCACACGCATCGCTGAGTGC 5729 29 100.0 32 ............................. CTGATAGGGGGCGCGACGTCGAGTCCCGACTC 5668 29 96.6 32 ............................C CCAACCACCGGGCGAGCATTCGGAATGTAGGT 5607 29 96.6 32 ............................C CAATCAACCCGATGGTGGTATCGAAGACCTCC 5546 29 96.6 32 ............................C CATAAGAACGAGAACCATAAGACTAGTAAAGA 5485 29 100.0 32 ............................. ACTTTCAAAAGTCGTTTTCTAGCTCGTCTGGG 5424 29 100.0 32 ............................. TTCGGGGAGTTCGTCGACTTTCTGCGTAGCAA 5363 29 96.6 32 ............................C GTCACCGGGCGCATCCAGCATTTTGAATGGCA 5302 29 100.0 32 ............................. CACTCAGGGCAGCAATGTGTAGTAGTCATTTA 5241 29 96.6 32 ............................C ATCCACCGGATTACCCTCGAATGCGTTTTTAT 5180 29 96.6 32 ............................C GGAGACCTCACTGTCTTCTATGACGAACGTGA 5119 29 96.6 32 ............................C CGGCTGGCGAAAAGTTCACCTTCGAGCGTCGC 5058 29 96.6 32 ............................C GCCCACATGGAATGCAGCCCCACAACGGCACC 4997 29 100.0 32 ............................. TCCCGCGATACCCCGGCGCAACACCATAGTTT 4936 29 100.0 32 ............................. GAAGCTCAACGGCATCCATAAGGAGTTCAAGG 4875 29 100.0 32 ............................. GGTGGGGCCGTAGCCTCGGCTTCTGCGGCCTG 4814 29 100.0 32 ............................. CAATCACCGCAGAGCTGAAAGATGCTCGCTCT 4753 29 100.0 32 ............................. GCACGGGCAAACTTAACGACGAATTCGGGGTC 4692 29 96.6 32 ............................T GGTCAACCCTCACTAGCGACGGCGCAAACATG 4631 29 100.0 32 ............................. GGCGAACCGGGCAGTATGTGGCTAACGATCGA 4570 29 100.0 32 ............................. TCATACGGATGAGGGAAGAGCTTATCGCCTGG 4509 29 100.0 32 ............................. TCATACGGATGAGGGAAGAGCTTATCGCCTGG 4448 29 100.0 32 ............................. GTAGCTAACTTCTGGCAGATCACTAATATCCG 4387 29 96.6 32 ............................C GCCTCAGCCTCCCCAGCGCTCAAATCAAACTG 4326 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCCGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGTGACTTATCAAAATGGCTGATTGAACTAACGCCGGGTGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGTAGAGCATTACTGGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAACCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAGTTCAAAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTTCGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : CAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCCAATCAGCAACAACCTGCAGGCCAAAGCGCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCGAAGCCTTCATCCGCTGCCGCGCCGCACGCAGTGCTCCCCGCGTGAGCGGGGATGAGCCCGAAGGTGTCGCCGCCTGATTTGAGGTTGATGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCCGATTCAGCCGGAACCTATGTGGGACGTCTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCATCCGCATCTCGGGAGAAGTCACCCTGCCGGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGCTGACCCGGTGCGTCGTAGTCGTACACGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCTA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //