Array 1 118136-119502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOKM01000021.1 Acetobacter tropicalis strain DmCS_006 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 118136 32 100.0 34 ................................ TAACATTACTCAACATTTGCAAAATGGTTAAACG 118202 32 100.0 35 ................................ CATTGCAATGCGGCGTGCATCAAATTCCTCATAGG 118269 32 100.0 35 ................................ GCTCATTGCCGAGGCAAATAGCCTCATGCCGCGTG 118336 32 100.0 35 ................................ CCTGCCACAATCAGACTGAGGTGCCTGAGTATGCG 118403 32 100.0 34 ................................ ACTTGTGTTCGGATACACAATTGATAGGGCCAAG 118469 32 100.0 36 ................................ ATCTGTTTACTTGCCCACAGAGTTGAGGTCTGCACG 118537 32 100.0 35 ................................ TTGAAAACGTGCCGACATATGCTGAAAGATCACCA 118604 32 100.0 34 ................................ ATTGCCCTAGATATTTCATCTGTCAAAGTATAAG 118670 32 100.0 35 ................................ TGCAAAAGAGTTTGGAAAAGAAGTGCGTTGGTGAG 118737 32 100.0 34 ................................ GGCGGCGGCTATTTGTGGCGTGGATAGTAACGGG 118803 32 100.0 34 ................................ TGCCAAAGTCTATCGTGATTTAGAATTTGGCGAG 118869 32 100.0 38 ................................ GAGGTTGTTACTGGCAGACGTGCAGACATTCGTGAGTG 118939 32 100.0 34 ................................ GAGCGCCATTATAATTATACCCGAAAATATTGAG 119005 32 100.0 35 ................................ GATTGATTACGTCAAAGAAAGCGGTTTTACGAATG 119072 32 100.0 35 ................................ TTGCCGAAGATATTAGCTGAAAGACCAGTATCTTG 119139 32 100.0 34 ................................ AGCACCTCACGTTGGGCGAGCTGTGCGGGCTAAG 119205 32 100.0 34 ................................ ATTTGTCAGATCACCAATGATGAGCTTGCCTCGT 119271 32 96.9 35 .............T.................. ACCGCCCTGCCTGGTTGGTTCCTAGTGGGTGCCGA 119338 32 100.0 34 ................................ CCGCTGCGCTGGCGTCTGCTGCACTGGCGGGACG 119404 32 100.0 35 ................................ GCGTCCTGACCCATGATGGTGAACCATGGTTTGTG 119471 32 93.8 0 ........T..........T............ | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.6 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : CAGCCTGTGGCAGGTTGGCAGGGGGCACAAGGTGCAGAGTATTGCCACCCGCGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCATAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGCCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGATTCGCGCAAGATATAACCCTTTCAAACCAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACAG # Right flank : CTGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTCCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTGGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCAATTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42953-43710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOKM01000062.1 Acetobacter tropicalis strain DmCS_006 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 42953 32 100.0 35 ................................ TTATGAAGGAACAGCAGACAGCGGAAGGCATAATG 43020 32 100.0 34 ................................ GTGCTATCAATAACGATACTGGCGAAACAACATA 43086 32 100.0 34 ................................ TTTAGTTTTTGGGTTTATAATTTCGCTTTCTTTA 43152 32 100.0 33 ................................ TCTAGCCTCTGATGGTAAAGCCATTATTGAAAG 43217 32 100.0 34 ................................ GGGCATTTCTTTGGTTGCCGGAACAAAAAATGCC 43283 32 100.0 34 ................................ AGCATTGCGTCAGTAGAAGGGAGATTCCCAGTGA 43349 32 100.0 33 ................................ GCTTTCTACGGCCCACAAAATCGGCAGGATTTG 43414 32 100.0 34 ................................ CCCAGAAAAAGGTCTATGCTGGCTATGGAAGGGT 43480 32 100.0 35 ................................ TCCGCGTGCCTTGGTGAGTACTGCGCGAGCTTCTG 43547 32 100.0 36 ................................ TGGAGTTGCAATGGGACCAGGTTGATTTTGAACGTA 43615 32 100.0 33 ................................ GTTGTCGATGCATCCGAGTGCGATATTAACTGC 43680 31 81.2 0 ......T...A......-C.....G......T | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGTAACCGCCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACTTACAGC # Right flank : TATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTACGGGCTTCAGGGCATCTATGCGCAAATTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCCCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //