Array 1 8670-7116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKK01000003.1 Escherichia coli strain 200244 ctg7180000007015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8669 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 8608 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 8547 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 8486 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 8425 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 8364 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 8303 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 8242 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 8181 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 8120 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 8059 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7998 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 7937 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 7876 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 7815 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7754 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 7693 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7632 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7571 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7510 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7449 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 7388 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 7327 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 7266 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 7205 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 7144 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1346-1923 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKK01000060.1 Escherichia coli strain 200244 ctg7180000007116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1346 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 1407 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 1468 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 1529 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 1590 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 1651 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 1712 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 1773 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1834 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 1895 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //