Array 1 7-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNM01000060.1 Cyclobacterium qasimii M12-11B contig00064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 37 ..................................... ATGTTATTCATAAACATTAAACAAAAAGGGGTTGATT 81 37 100.0 34 ..................................... GTTCGGGCCAAGATCAAAAAGGATTCTAGTTATG 152 37 100.0 37 ..................................... TTCGGGCTTACTGTACTTAGAGACACTGAAGTAAGAT 226 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTCTTAATCCTTGTTGTAGTGGATGTGTCTCTCGGAC # Left flank : ATATAGG # Right flank : CTGCTGATTCCATAAGTAATTGACTAAGTTTTGGTTATGTCCTTGTGTTGTTGGATTTCTCCCTGTTTTAGCCTTCATAAACGCTCTTTTCTGATTCCCTTGTTCTAAATCTAGAGGCTTTTTATTGATTATGCAAATTTGATTTAGTGTTTAATTAGAGTTATTGAATAGCCTTGCCATCCCCACTTTTCTTTTTCTTATCAAAGGATTGAATCGCCTTAACCCTGACCAGTACCCCATCCTCTATACAAAATTCTATTAATAAAGAGGGAGGAATAAATATATCTTTTACAAAGCCAAATTGTTTGCTAGGGTGCATGGTGAATTTCCCTGATTTGGTTATTATCCAATTACTGAATAATCTATCGTCTTCGAACTTCTTGGCTTGGTGTACGAAAATCCACCCATTGGGAGCTTGTTGTCCTACTATTTCATAAGCTTGTCCGGTCTGAAGTTGTAGGCTTCTTGTAATTAATTTGATTGTTTCCTTATTGGGATTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTGTAGTGGATGTGTCTCTCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 31-1169 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATNM01000041.1 Cyclobacterium qasimii M12-11B contig00096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================================================================================= ================== 31 25 100.0 49 ......................... AATAGAGTCGGTTGACCGTATTGAAATATCTTGTCTCGTCAGAGAGCAG 105 25 100.0 50 ......................... TCCAGGGTTTGATTTGTTAATAGACTCTTCTGGCCAGTGTCCGAGAGACA 180 25 100.0 49 ......................... AAAATAACGAACTGTTTTAACTACTAGTTTACGAGATGTCCGAGAGACA 254 25 100.0 49 ......................... CTTTCTAACTTTAAAGTGTCAGACACTTTGTTCCATAGTCCGAGATGTA 328 25 96.0 48 ......T.................. CATTGAATTTGTACCTGAAACCCCTATTGATATAGGGTCCGAGAGGTA 401 25 72.0 93 ......T...........GG.CCGA GCGTGAAGAAAAGTGCCAGCGGAGGCACTTTTTAGTGAGGGGCCAGGAGGCGGGTGGGTCTATTATAGCTATAGGTATTATATATCAAAGAAA 518 25 88.0 76 A.....T.....T............ CTTGATCACAGGATCATCTCCTGCATACAGTATCCTGTCCGAGAGACATCCCGATGCGCTACACTTTCGGGACAGG 620 25 100.0 45 ......................... TTACTAAGTTTAATTGTGTATTCTCGTTTCATGGTCCGAGAGCAA 690 25 92.0 183 ......T.................A AAGTTAAACTTAGTTGTTTGTGTTAATTTCCAAGATGTTAGAGAGACATCCCGATACGCTGCACTTTTCGGATACAACAAGGAGGACCGAGCGTGAAGAAAAGTGCCAGCGGAGGCACTTTTTAGTGAGGGGCCAGGAGGCGCGTGGGTCTATTATAGCTATAGGTATTATATACCAAAGAAA 897 25 88.0 76 A.....T.....T............ CTTGATCACAGGATCATCTCCTGCATACAGTATCCTGTCCGAGAGACATCCCGATGCGCTACACTTTCGGGACAGG 999 25 100.0 47 ......................... TACATATACTCTTTTTGTAGCCGTTTGTGGTTTCAGTCCGAGAGCAA 1071 25 96.0 49 ......T.................. TACGATAAATTAAAATGAATGAATAATTAAAATGATAGTCAGAGAGATA 1145 25 96.0 0 ......T.................. | ========== ====== ====== ====== ========================= ======================================================================================================================================================================================= ================== 13 25 94.5 68 CATCCACTACAACAAGGATTAAGAC # Left flank : TGAATCCTGTTACCAATCGTCCGAGAGACAC # Right flank : CGCAGTCACTTTATTCCATAGCTCTTTATGCTCTGGGTCAGAGAGACATCCCGATGCGCTGCACTTTCGGGATACAACAAGGAGAACCGAGCGGGAAGAAAAGTGCCAATGAAGGCACTTTTTAGCGAGGGGCAGGAATGCAAGGAGGTGTTGATTAATTATCGTGATCTCTACAAATAACAAGATCCCTATGGTTGGTAGCATCGGGTAGTCTTTTTTTAACATATCATCCTGGCCGGTTCCTGAGCGGAGCCGAAGGATAGGCATTTCGTACTCGTCACCCTATGTCTTCGACTCCGCTCAGCCGCCGGGATGATGACAGCCGCCGGGATTGTTGAATTGCCGCCGAGAATGTGGGATCTGTAGAATCTGGCCTAACTGATTCCCGAGCAGACCCGAAGGACAGTTAGCACGAAAAAAGGCCATCTTAAAACAAAGACAGCCTTTCTATTTACTTATGAAAAATCGTTTACTATACCCTTTCCAACTTTACTGGGTAG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-2.20, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCACTACAACAAGGATTAAGAC # Alternate repeat : CATCCATTACAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //