Array 1 522665-522815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKR01000001.1 Escherichia coli strain MOD1-EC5582 MOD1-EC5582_1_length_552569_cov_46.4384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 522665 29 100.0 32 ............................. TCCCGCGCCGAGGACTACGGCGATCGGGTTGT 522726 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 522787 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 538317-539932 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLKR01000001.1 Escherichia coli strain MOD1-EC5582 MOD1-EC5582_1_length_552569_cov_46.4384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 538317 29 100.0 32 ............................. CGATCCGGGCGTGCCGTTTGTTGCTCGCGGTA 538378 29 100.0 32 ............................. ATTATATATATCAAAATATTGGTCCTGTATTT 538439 29 100.0 32 ............................. CAGATCGTTAAGGCAAAAACGCCCCAACGAAT 538500 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 538561 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 538622 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 538683 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 538744 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 538806 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 538867 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 538928 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 538989 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 539050 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 539111 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 539172 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 539233 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 539294 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 539355 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 539416 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 539477 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 539538 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 539599 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 539660 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 539721 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 539782 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 539843 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 539904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //