Array 1 41932-41302 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZO01000020.1 Pararhodospirillum oryzae strain NBRC 107573 sequence020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 41931 32 100.0 33 ................................ GTTGATCGTAGGGAGACTGCAAAAGCGCGGCAA 41866 32 100.0 34 ................................ AGCAATGCGGGCGGGGCCGGCTTGCATGTGTCGG 41800 32 100.0 34 ................................ GTCCTTATTCAAAGGGGTAAGAATGGCCGCACCT 41734 32 100.0 35 ................................ GACGAGCTGCGCGCCGAGCTGAAGCTGGACGACGT 41667 32 100.0 35 ................................ CCATGCCCCGAGCCGCTATACGCCATGCCAACGAC 41600 32 100.0 35 ................................ CCGGCAGATCCTGGCCGGATCTGACACCCACTCGT 41533 32 100.0 35 ................................ CCCGACCTCCTGCCCCTTGACGAGGGCGGAGAGGT 41466 32 100.0 34 ................................ GTTTACCCCCACCTGGGAGACCAGCCGGTAGACA 41400 32 100.0 35 ................................ GGGGATGAGGGCGCACAGCTTACGGCGCTGGTCAA 41333 32 93.8 0 ............................G..G | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.4 35 GTCGCCCCCCGTGCGGGGGCGTGGATAGAAAC # Left flank : AAACGGCCAATCCGCGCGTCGTGGCCTTCGCGCCACGC # Right flank : CACACGCCGCATCGGGGTCTGGTCGCCTTGCGCCACACCCGTGCGGCGGAGTATCATACCGATACCGACGGAGGCCGGGCGCCGCTGCCTTCAGTTGGCCACCGTCGGGGCGAGGGAGAGCGCGCCTCCTGTCGCCCCCCGCAGGGCCATGAGCCCAACGCGGGGGGAAGCCAGGGCCGGGTTACGCGTCGCGCAGAAGGGGGGCGGCGCGGATGCCCAGGGCGCGGCCGGTGCCGGCGAAGCCGGTGGCGAGGCTGAGCACGAGGGCGAGGCTCACCAGGGCCGCGATCCCTCCCGGGGCCACGACCAGCGGCGTGGACAGGCCGAAACGCAAGATCGCCCAGGCGGCGCCCACGCCCACGCCCGAGGCGATCAGGCCGGCGGCAAGGCCCATCAGCCCGTATTCCACGGCAAAGGCTGCGGCAAGGGTGGGGCGGGTCGCGCCCAGGACCTTGAGGGTCACGGCCTCGCGCAGGCGCCGGCGCTGGGTGGCGGCGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2722-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZO01000021.1 Pararhodospirillum oryzae strain NBRC 107573 sequence021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2721 32 100.0 33 ................................ GCGCATACGACAGCATTGGCCACGGCGGAAAAT 2656 32 100.0 35 ................................ CCAGACACATCCCCAGCCCGAGAAATCATCGTGGA 2589 32 100.0 35 ................................ CATCCAGTCCCTGACCGAGCGCGATCTGGCGCGGT 2522 32 100.0 34 ................................ GATGGAGCCCCCATGACGGCGGCAATCCGCCAGG 2456 32 100.0 34 ................................ GACCCCACAGTGCGGACACCGTACATGCCAATAG 2390 32 100.0 35 ................................ GCGCGGGATGGTCGTCTGACCTGCGGCCTGATGGC 2323 32 100.0 34 ................................ GAGACCGACGATTTTGCGGACGATTTCAAGGTTG 2257 32 100.0 36 ................................ GTCGCGCGCCAGCAGTGCCGCCAACTCGTGCTGAAC 2189 32 100.0 34 ................................ GGTCGGTACCTTGCGCACTATGGCGCGGCCATGA 2123 32 100.0 35 ................................ CACGCCGACATAGGGCGGATCGCAGTAGAACAGCG 2056 32 100.0 35 ................................ GTGGACCCCTGGGAAGCCGACCAGCACCCGGGCGC 1989 32 100.0 34 ................................ CGCCCCTTGTTGCTGGCGACAATCGCGGCAACAA 1923 32 100.0 32 ................................ TCGGCGGTGTGCTGACCCTGGGCGCCGGGCTG 1859 32 100.0 37 ................................ GCGAATCTCAGGCACGTCGTTGATCGATAGTACGAAC 1790 32 100.0 34 ................................ AGCGGCCTTGGCCTGGTATGTCCCCTCCTGGCCG 1724 32 100.0 37 ................................ GACACCCAGAGCAGATGGAAGCGCGAAAGGTTTGATC 1655 32 100.0 33 ................................ TGGCCGCATGGACAAGCGCGGCGGAAGGCCCCG 1590 32 100.0 34 ................................ GGAGAATCGGTAGCGTGGGACAAGACGATCGAGA 1524 32 100.0 34 ................................ GTCGATTGGCTCCAAGGGATGGTTGTCCAGGGCG 1458 32 100.0 35 ................................ CATCGCTGGCCCCGGCCAGCGGCCCTCCTCAAGGC 1391 32 100.0 35 ................................ CATGCCGTCGCGCCAGAAAGGCCGGTTGCGGCGAT 1324 32 100.0 36 ................................ TTCCCCGCAGGTGCGGGGTTACTCATCAAGGCTAGC 1256 32 100.0 34 ................................ CAGGCTGCTTTAAGCCGAGACATCAATCCACCTC 1190 32 100.0 35 ................................ GAGGTCCTCCGGCGTAGCTCTGCCAGAGCGCTCAA 1123 32 100.0 35 ................................ CCTTCTCGGTCAGGTAGACGCCGCACTCCCCGACC 1056 32 100.0 34 ................................ AGCGACGAGGGTGGCTGTTGCCCTTGTTCGGCAA 990 32 100.0 33 ................................ CCAGGCCGAGCGGGCAATATCGGCCAGCGCCAC 925 32 100.0 35 ................................ TGACCACCTCCAGGGTATCGACGGTGATACTGGGC 858 32 100.0 34 ................................ GCGGCCACATCGTCCGATCCGAAATACCCCGCTT 792 32 100.0 34 ................................ TTCTGCCGGCGCCGCGAACTCGCCCGCGTCGCGC 726 32 100.0 34 ................................ CTTGATCGTCCGGCGCCAGCACCGCCTGGGCCGC 660 32 100.0 33 ................................ CCATGACTCCCGCTGGCGCTATGATCACGGAAT 595 32 100.0 34 ................................ CGCGCCCTTGAATAGGTCTGCGATGCCAGTCAGC 529 32 100.0 34 ................................ GCTGCACAGCAATCCGGCGCCTCTGCCGAGCTTA 463 32 100.0 35 ................................ ATTGAAAAGGCGGCCGGCGCGGTTAATGCGACCGC 396 32 100.0 34 ................................ CCCTGCGCTACGCCCGGGGCATCGGCCTTGACCT 330 32 100.0 33 ................................ CACCACCATCTGGGGGGACATCCGCGCCTTTTG 265 32 100.0 33 ................................ TCCCGCCCGACGCTCACGTCCTTTTCCAAAACA 200 32 100.0 36 ................................ GCAGCGCCGAAGTCTCGTCCGATGCGCTGGTCTGGC 132 32 100.0 33 ................................ GTCGAGGTTGGCTCCATACCAGTCACCGGCCTC 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 100.0 34 GTCGCCCCCCGTGCGGGGGCGTGGATAGAAAC # Left flank : CCCTGCCGCTGCCCTTCGAGCCCAAGGCGAAGACGGCGGTGAGTGGCGATGCCGGGGCCTTGCTCGGCGCCCTGGCCACCGAGCTGGCGACCCTGGAGCCGTGGACGCGCGAAAGCCTGGAAGCCTTCGCCCGCGCCCAGGCCGAGGCGCGCGGCCTCAAGCTGGGGCAGGTGGCCCAGCCCCTGCGCGCCGCCCTGACCGGCAGCACGGTGTCGCCGCCTTTGTTCGAGATCATGGAAATCCTGGGCCGCGCCGAATCCCTGGCCCGCCTCGCCGCCCTGCCGGCCTGATCCGCGCGTCCTCTCGGATGCGAACCCGCCGGGTGCGAACCCCAAGGGAACGCCGGAATTCCGGGAGGATCGCACCGGCTTTAACCCGTTGATTTCAAGGAAAAGGGGGCATGGTGCCGTTGCACCGGCCCCCTTTTTTCGTCCCCCCCGCCCCCGGTTCGCACTCCCGTCCTGTTTTCTCCAATCCCCCCAGCATGATACACTCCGGCC # Right flank : CTTATCGGCCTCGGCCAGGAGGCGGCTAGCGGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29179-29413 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZO01000022.1 Pararhodospirillum oryzae strain NBRC 107573 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 29179 37 100.0 29 ..................................... TTGGTCGGGGCAAGAGGGTTCGAACCTCC 29245 37 100.0 29 ..................................... GCATACGCATGTCCAGGCCGAAAGGCTAA 29311 37 97.3 29 A.................................... TGATCAAGGTCCACCAAAAAAAGACCGGC 29377 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GACTGTAGCACGGCTTGTTTCGGAGAGCAGCTACAGC # Left flank : GGAAATCGTGCGGCAGGAAAGGCTGGATCTCGATGATTGAACCGGAAGTCCGTCGGTTGGTCAGTTTGCGCACCCGCGAGCGGCGCGGGCTGCGTCAGGGAGGCGTTTCGGCGTATCGCAGCATGTGGCTGGTTGTTCTCTTCGATCTGCCGGTGGGGTCCCAGGCGGAACGCCGGGCCGCCAACCGGTATCGGCACCTTCTGCAAGACGAGGGTTTTGTCATGAAGCAGTGGTCGGTGTATGTGCGCTATTTCGACAGCCGGGCCAAGGCCGAGGCCGCCGCCGACCGCCTGGGCGCCCAGGCCCCGCCCATGGGGTTGGTCAGCATGCTGTTCCTGACCGACAAGCAATACGGTCTGACCCGCAACTTCGAAGGCGCGGCACCGCGTCCGACCGAGAAAAAACCGGAGCAACTGGCCCTGTTTTGAGCCGTTTTGCTCCGGTTTTTCGTCACCCTACCCCCGGAAAACAAAGCGAAATCAAGGAGGTGGGAGGGGGTG # Right flank : CCGTGCAGAGAGCATCGAAATCCCGGGGCGCCATCGCTCTGACGACGGCCTTGATTCTGGCGAAGAGCATTTCGATGGGATTGAGGTCGGGGGAATAGGCGGGCAAGAAGGACAGCGTGGCGCCGCACGCTTCGATGGCCCGTCGAGCAGCGGCGTTCTTATGGACGTTGAGATTGTCGCAAATCACGATGTCGTCGGCGGCCAAAGTCGGGGCCAGGGCTTGCTCGACCCACGTTGCGAACGCGTCGCCATCCATGGCACCAGGTAAAAGGATGGGAGCGTCCACACGCTCAGAGCGCAGGCCCGCGATAAAGGTATTGTTATGCCAATGTCCGCGGGGAACCGAATCAATGCAGGGTTGGCCCCGCTTGGAACGCCCGCGTAAACGGGTCATCTTCGTATCAAAACCACTTTCGCCGATGAAGACCAACGCCCCGATATTAAGATCCGTCATTCCATTACGCCATCGCATCCGCGCTTCGACAATGTCTTCGCGCTTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTGTAGCACGGCTTGTTTCGGAGAGCAGCTACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 22430-17736 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZO01000050.1 Pararhodospirillum oryzae strain NBRC 107573 sequence050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 22429 32 100.0 34 ................................ AGCGCGGCCTTGAATCCGCGCTCGGGCAGACGTG 22363 32 100.0 35 ................................ GCCCGATAGGTCGGCGTCGGCCGATCCGCTGCGGG 22296 32 100.0 34 ................................ GAGGCCACGCAAGGGCGCCCCGTCGGGTTGCTGT 22230 32 100.0 35 ................................ CCGTTCGCGGGTCCTTCCTGCCCCAAAAACTCATA 22163 32 100.0 35 ................................ GCGAGCCGACTTTGACAGGATCGTCGCCCGACATG 22096 32 100.0 33 ................................ GTGGGAGCGGGACGCCCGGGCGGGTTTGGCGAG 22031 32 100.0 33 ................................ ATAAGCAACGACTGTAAGTAGTCGTCAAGATCG 21966 32 100.0 35 ................................ CACGCCGCGTACCCTGCAGAATATTCAGACGACGC 21899 32 100.0 37 ................................ CAGCGATTTCGCCCGACGACGTTGGCCAGGCGTTGCA 21830 32 100.0 35 ................................ TTCATCGGTAGATTGGCCGGGGACACTAGGGACAC 21763 32 100.0 34 ................................ GTGGCGTGGCCACCGACGGCCACAGCCTGGTCTC 21697 32 100.0 34 ................................ GTGGATCTCGGCCAGTTGCGGGCCAAGGGTGTTG 21631 32 100.0 34 ................................ GCCCGTGCTGTACGACGCCGCCGCCGACGCGAAA 21565 32 100.0 33 ................................ GATCGCAGATCCGCCGATGAATTGGCGCCGGTG 21500 32 100.0 33 ................................ TTTCTGGCGATTCCGACTCCGGCCATGCCGCAG 21435 32 100.0 36 ................................ ACGCAAGGCGTTGTTGATCTGTACGCCCAGATGGCG 21367 32 100.0 34 ................................ GGCGGCACACGTTGAGTCACGCTTAGAGTCACTG 21301 32 100.0 35 ................................ TTGCTCGTGCCCTACGCCCGCCGGCGGGCGGTCAT 21234 32 100.0 35 ................................ CTGGGGACCGTGCTGTCCGGTCTTTTCGCCGCGCC 21167 32 100.0 34 ................................ GAGGCGTTTATCGCCGGAGGATGGGTGTCTCTGT 21101 32 100.0 36 ................................ TTGTGCGTAATACCTACTATACACTCCAGACCTGTG 21033 32 100.0 35 ................................ GCGGCGATCTTGGTCGCCAGGATCGACATCCTGGC 20966 32 100.0 35 ................................ ACTGCAACCGGCGATTGGAAACGGTTGCTGGGATC 20899 32 100.0 33 ................................ GTATCCGCGCGGCCCGCAGGCGGCCAAGATCTT 20834 32 100.0 35 ................................ GGTCGATACCTCGCGCGATACAATGCTGGCATGAG 20767 32 100.0 34 ................................ AGGGATGTATTGCTCGATATTGCTCGATCGGTAC 20701 32 100.0 36 ................................ GGCAGCCACCTGGGCGGCCTGGGCAGCGTCGCGCGC 20633 32 100.0 36 ................................ CTGCGCGGCTGGCTGGCTCGGGCCAACGAGTTTCGG 20565 32 100.0 34 ................................ TCGCCGAGCTCGACATCGAGCACACCGCTGACGA 20499 32 100.0 36 ................................ GTCTCGCCCTCACCCTCGAAAATCACCCCTGCCGCT 20431 32 100.0 35 ................................ GCCAATCGTGGCGGCGGACGTTATTGCTGCGATCG 20364 32 100.0 34 ................................ TGACGGGGGCGGATGGGGCTCTCCTGACGAAACG 20298 32 100.0 34 ................................ CGGACCTGGGCGGCGGAATTCACGGAGTACCCCC 20232 32 100.0 34 ................................ CTGCCGGCCGACGCCTCCTCCGCGCGCAAGCGGG 20166 32 100.0 35 ................................ CGGGCCAGCCCATCACCTGTCCCATCATTTGGCGC 20099 32 100.0 34 ................................ TGCGCGGGATGGTCGTCTGACCTGCGGCCTGATG 20033 32 100.0 34 ................................ GCCTCGGGCGCGATCGATTATCGCGGTATCTACT 19967 32 100.0 32 ................................ TACAACCTTTGGCTGGGGTTGCCTTGGGAAGA 19903 32 100.0 36 ................................ CTAGCGGTCCGACGCTTACCATCCCGACCGACGAAC 19835 32 100.0 34 ................................ GTGTCTCACCTGGTCTCTCGGATCGACGTGCTGG 19769 32 100.0 34 ................................ CTCTTGTCCGGGCACTCCGACGTGAGGGAGCGTT 19703 32 100.0 35 ................................ GTCCTGGCTGACGCCTGCCGCCTTTCTCGCGGCTC 19636 32 100.0 34 ................................ ATATCTCGGACGTCTCACCTATCACGCGGAAGAG 19570 32 100.0 33 ................................ GGCCGCCTTGGCGGCATAAGTCCCCTCCTGCCC 19505 32 100.0 33 ................................ AGGGCGGCGGAAGACATCACCACGGCTCACTTG 19440 32 100.0 33 ................................ GTTGCCTGCCACGCCTGGGCAGCGTGGGCCGGG 19375 32 100.0 36 ................................ TCCGATCGACGGGACCTACATCCGAGGGCGCGCCGA 19307 32 100.0 34 ................................ TCGCACGCGGAGCAGGTAGCTCAGGCCAAGCGCC 19241 32 100.0 35 ................................ GAAACGGGTGGACTACGAGCGCCTCCTGGACGCCC 19174 32 100.0 35 ................................ CCGGCGGCCCAGGCCGGGAAGATCATCCCCAAGAG 19107 32 100.0 35 ................................ CTCCAGGAGACTTCCAACCATGACCCAGCCCACGC 19040 32 100.0 36 ................................ GCCGTCAGGTGTTAGCCAATAGCGCACCAGCAGCGT 18972 32 100.0 36 ................................ TGTTTTCCGAGTTGAGATAGGGCCGTTTTCATCGCG 18904 32 100.0 35 ................................ GGTGGTGCCCAGCGCGCGGGACTGCCTTTTGCACC 18837 32 100.0 34 ................................ CGGTCGCTGGTTGGAGTTGTGCAAACCCGCGCTC 18771 32 100.0 34 ................................ GGATCACCCGCGCCGGGGGCCGGGTGCGCCCGCC 18705 32 100.0 35 ................................ GCTGCCCGCGTAGCCCGCAACCGGCAAGCCGCCGG 18638 32 100.0 34 ................................ GATCCATGGGGTGTTGCTTCCGTCGGGCGCTGGC 18572 32 100.0 40 ................................ GCGGCCGGGGTGATGGCCGAGCTGACCGGGCGCGCGGCGG 18500 32 100.0 34 ................................ GCCGAATTGGGCCGTGCCGCCCGGTTGGACCAGG 18434 32 100.0 34 ................................ CTCGATAACGACATGCGCGACGCGGGCATCGCGC 18368 32 100.0 35 ................................ GGTCGGTACCTTGCGCACTATGGCGCGGCCATGAG 18301 32 100.0 35 ................................ ATTATCAATTTCGGCCACGTGGCTGCCGCCAACAA 18234 32 100.0 37 ................................ TATGCCGGCACGACAACCTCGGGGCTGGCGTGTGATG 18165 32 100.0 34 ................................ CACCCCCACGCCAACCTTGTTGGCCTCGTTCTGC 18099 32 100.0 35 ................................ TTAGGCCGCACGAGGAGCGCACGGTGCGCCGGGCG 18032 32 100.0 34 ................................ CAGGCCGGTGGTCAGGGGGACCGGCGTCCAGGTG 17966 32 100.0 34 ................................ GCGGCACACCTGGTCGCCAGGATCGACATCCTGG 17900 32 100.0 34 ................................ CGTCATCGAGAGCGAGGGACCCAACCCCAACCCC 17834 32 100.0 35 ................................ CGCTCCTCCGCGCCGGCCGTCACAGCAGGTAGCTC 17767 32 87.5 0 ..................A..C....G....G | ========== ====== ====== ====== ================================ ======================================== ================== 71 32 99.8 35 GTCGCCCCCCACGCGGGGGCGTGGATAGAAAC # Left flank : AAATAGGAGGCGCCGTCATGATGATTTTGGTCACCTACGACGTGAGCACGGTGGACACGGCCGGCCGGCGCCGCCTGCGCCAGGTGTCGAAAGCCTGCCAGGACTTCGGCCAGCGGGTGCAGCTTTCCGTGTTTGAGATCGAGGTGGATCCGGCCCAATGGGTGGCCCTGAAGGCCCGCCTGGAATCGATCCTCGACCCCAAGAGCGACAGCCTGCGGTACTACCATTTGGGGGCAAACTGGGAACGCCGGGTTGAGCACGTCGGCGCGAAGCCGGCCGTCGACCTCAACGGCCCACTGATCTTATGACCCCCTCGACCCCTGGTGCGAACCGGAAGTGGCCCCGAATTCCCGGGGAGGTTCGCACCAAGTCTATCGCCTTGTTTTCATGGGAAATAAACACACGCTTTCGTCGAGGAGCCTCCCCGGCGCCCCTTTCTCCTCCCGGTTCGCACTCCCGTTCAACTTTTCTCAACACCCCCAACATGCTATAAACCGGCC # Right flank : GGGAAGGAAGAAACACCTTGACTTGGGCATAGGTGAGACCGAGCGTGGACCCTTCTCCTCGTGGCGACGTGGGAAACCGCGCCGTCCGAGATTTTGCGCCGTTCTGATGTTGCCTGAGGGTCTTCCCTCGAAATCCTGCACTACGCCCCTGCTTTAATATTTTGAGGCACGCAAGATGCACACCCCGCTCGCGCGCATCGTCATTGTCGACGACAGTGACAGCGTTCTTCGTTATTTAACCCATTTGGTCACGAAATTTTTTGGCGAAGGCGCGGCCATTGCCTTTTCCGATCCCCTGGCGGCCTTGCCCTGGTGCCTGGTCAATGAGGTTGACCTGATTGTCGTGGATAACGTCATGCCGGGGCTCAGCGGCCTCCAGATGATCGAAAAACTGCGCCAGCAAGGATGCAACACGGAAGTCCCGATCGTGATGGTCACGACGTGCGACACCAAGGATGTCCGCTACACGGCCTTGCAAGTCGGCGCCACCGATTTTCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22739-23927 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZO01000056.1 Pararhodospirillum oryzae strain NBRC 107573 sequence056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22739 29 100.0 32 ............................. CTCATATCATTATGCGTCGGGGGCATGTGGGG 22800 29 100.0 32 ............................. CAAAGACGAAACACACCCGATTGTGTCAACCG 22861 29 100.0 32 ............................. CCTCCCCCCGCTGATCCGATCCCTCTCAGCAC 22922 29 100.0 32 ............................. GGGAATGATACCTGGACTCAAACCCAGCTTTT 22983 29 100.0 32 ............................. TTGCAGGGAGCTTACTTGCGGGGAGCTGACTT 23044 29 100.0 32 ............................. TCACCCGAATCCACCGATCGGCCGTGTACCCA 23105 29 100.0 32 ............................. GGTCAGAACCCGTATAGCGGAGACCTGTACGA 23166 29 100.0 32 ............................. GGCCACGTCGGGCAGCGCCTGGCCCCCCAGCG 23227 29 100.0 32 ............................. GCCCTGGTGTGGTCTTGCCGGGTCCGGGAGAT 23288 29 96.6 32 ............................T TTAGTACGCGCGCGCGTCATCACCGCTCCCCC 23349 29 100.0 32 ............................. GAGCATGCGGGCTTTCAGGCCAGCAAGTTGTA 23410 29 100.0 32 ............................. GATATGACCATACCTGTGTCCACACGGATCCC 23471 29 100.0 33 ............................. TCAAGACGTGCATTATTGGGGATAACCTCGTGA 23533 29 100.0 32 ............................. CCGAGGGCCAGGCGCTCGTCAAGCGCCTTGGG 23594 29 100.0 32 ............................. CTTGATGGCTACTTTGAACGCTCCTCCGACGG 23655 29 100.0 32 ............................. TTGGTTGACATCTCCTCGGGGAGGGTGCGCCT 23716 29 96.6 32 A............................ TCCTCGCCGTCGGCCGGGCCTGGGCGCGGGCC 23777 29 100.0 32 ............................. TGCCGAGGAAAAATGCCGCAGCGATCAGCCCC 23838 29 100.0 32 ............................. AGGTCGATGCAAGACAGGCCGGAAGCGTCACG 23899 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GGTTCCCCCGCAAGCGCGGGGATAGACCC # Left flank : AATCGATCGAACGACTGACAAGACGCCGGGCGGCGCGGATTTTTCGCCAACAGGCCGTTATCCCAACCATGATCGACCGGATCAAAGGCCTGCTTGATCCGAACGGCCCGGACGAGGAAAACCTGTGATGCCGATGGTTGTCGTGATCACCCGGGACGTCGAAACTCGTTATCGTGGCTTCCTGGGATCGATGATGTTGGAACTGGCGCCTGGTGTCTATTCCCATCCTCGGATGAACGCCGGGGTGCGGGCTCGCGTGTGGGCTGTTCTCGCGGACTGGCATGCCCGGCTACGCCAGGGCAGTATCGTCATGACCTGGGCCGACACGGCGGCAAACGGCGGCCTGGGCCTCGCCACGCTGGGAGAGCCTCCCAAGGACATTGTCGCCCACGACGGGATGCTCCTGGTCCGCCGCCCCCTCCCTCAAAAGGGAGAAAAAACCGACGACATTCCGTTTGCTGTTTGAAATCGTGAACAATCCTATAAAGTTACAAGGCAGA # Right flank : GCCGCCGGGCGCGGGCCGGGATGGGCCTGCTGGGAACCGGAAAAGAGAACGAAAAGGGGTGAAGCCGTCCAGGTTTGGAAAATTGTCTAAAGGGCTTTGGAAAAAAGGACACGCACAGTGACCCAACCGCGCCCTAACCCTTTGAAAAAACTGGTGCCGGATGCAGGAATCGAACCCGCGACCTTCTGATTACAAATAAGGAAAAACGGGCTGAAACGGGGTGACGCGAAATGACAGGAGGTTTTGCGGACCCCGCCCAACGTCATTGAATGTCATATGGTTTCAGCATACCCTCTTATTATTCGATGACACCCGGTGACACCCGATCCCAGCTCACCGGGTCCGCACTGGGTCCGCACTTTGAACTGCGGACCCGGGCCGGGAGCGGGGAAGGAGCCTGTCCCATGAAGTTGACCGAAAAGAATATCGCCGGCCTCGTCTGCGAGCCAGGGCGCAAGGATCGGCTTTTTTTCGATGATGATTTACCGGGGCTTGGGGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAAGCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //