Array 1 3376-3588 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYU01000001.1 Lactobacillus johnsonii strain NM60_B2-8 NODE_1_length_106422_cov_1061.64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3376 28 100.0 33 ............................ CAATACAAGGTATCTGCATTTTTGACTAATGGG 3437 28 100.0 33 ............................ TGATCCTATGAAGCTTAAGTCCAACATAGTTGG 3498 28 100.0 33 ............................ TGCTGTACACATGGTACCTAGCGTAAGTATTTC 3559 28 92.9 0 ..A...........T............. | C,C [3583,3585] ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTGTTCTCCACGTAGGTGGAGATGATCC # Left flank : CGACTTTTGATGTAGATTACTTTTTGCATAGATTAGAGAAAAAAGGGATTATTAATGCACAAGTCATTTTAGATATTCGGAACGGCCAAGAAGATACCCCAGATATAAGAATGGCTTCAGGAGACGCCTTAAAGAATGTACTTAAAACCCATTTGCTTGGAAGATAATTAATTATTTTTAAGGGAGTAAATTTATTTGTCCGTGATTCACTAGCAATGGTTGATAAGAATGCAAAGAATAGAAAATGAAACTTAGGATATTTTGTACAGTATAATTACATAATATTGATTATTTGCGATTTGAAAATTAAATATAATTAAAAGGTGTACTGCCTTTATTAATTGAAGCAGTGATCACTTGCGTTAAAACCATGAACAAAAAAATATATAAATGATTTTTGAAATCATTATTCTTTAAGAAGCCTTTATGAATTTAGTAAAACTAATGAAAAATTGTCGTATTATAAACTATGAATGTGATAAGAACAAAGAATATTTAGT # Right flank : CCTTTGATGTATATTTCCAAACTTTTCGAATTCTTTTCTTTTCATTGTGCTATGCTTTCATAAGGCTTATACAATCTCATCTCTCATCGAAAATACACAGAAATAGTTTGTTTAAAGACCTACGTAGGTCGATATTTAATTATTACTTGTATTCTTACTAAAAAAAGGTGTATCTATTTTATTTTCATTTAATCGCTCAATGATATAATTAGCATAAATTATCTTTTGTTCATTTGTAGCATTACTTTTCAATATTGGCAACGGTGCATAATCAACATACACTAACACACCCTCCAGTTCTTTAGGTGTTAATATCATGAGCGAAAACCTTCTTTAGTTTAATATTTCTATCTTTTTACCACAGGCTTTCGAGCAAGCTGCTGCGGAATTTGAAAAATCAAATAATACTTTATCATAAGATCATTGAGGTAAACAGTCTACTAGAGTTTCCGACGAACGGACAAAATAAACCTAAAATTATTCAATAGAAAGAGTAAGTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTAGGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 5796-6606 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYU01000001.1 Lactobacillus johnsonii strain NM60_B2-8 NODE_1_length_106422_cov_1061.64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5796 29 100.0 33 ............................. ACAGTAGGTTGCCACTATATGCAGACAACACTT 5858 29 100.0 32 ............................. AAATGGATATGGTGTTACAGCGTCCAATCTTA 5919 29 100.0 32 ............................. AATTCATTATTGGTAAACTATCTGGCTTTTCA 5980 29 96.6 32 ............................C TTATAGAAGCCCCGACGGTCCAACAGCCTGTA 6041 29 100.0 32 ............................. TTTTTCCAGTGTTTCTTTAGTATTATCTAAAC 6102 29 100.0 32 ............................. GAATTATGCTTTAGATCACCAATATGGAGTCA 6163 29 100.0 32 ............................. TGGGATCAATTGCGACAGATTGGAGTCCAGCG 6224 29 100.0 32 ............................. TTGTTACCTGATCCGATTTTTTGCAAGAAATA 6285 29 100.0 32 ............................. TCTGAGACGTCTTTTCCCCATTAATTGTTACT 6346 29 100.0 32 ............................. TATCTAAACCATTGTGCCGAAGAATGGAGAAG 6407 29 89.7 22 ..G...........A.............C AGTTGCGCCCGTAGGGATTTTT Deletion [6458] 6458 29 93.1 32 .................A...A....... ACTCAACAGATTAAAGTTTAGAGACGTTTCTA 6519 29 93.1 31 ..............A............A. ATTCCTCTAACTTGGCTGATGAAGTAGCCAA 6579 28 72.4 0 ..G..T........A.A...TA.-.A... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.1 31 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATCAAATTTTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTACTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCCTTATCTAAACTTGAAAAGCTAGAAGAAGGAGAGAGTACTCCACAAATTGGCTCACAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGCGTGCTCATAATTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAACGCCTAGAAAATAGTAATCGGATAAAATAAGATAAGCACGACCAAATATCATGAGATGGTATTTGGTCTTTTTGCTGGGGTCAAATGTAGGTTAAACACTTGATTCTTAGTTGATAGAAACTAATTGAAAATGATATTATTTGAATTAGAGAATGGCATCATATCAAGGATCTTTTAGT # Right flank : TAGGATATTAGCAAAAATAATTTATATTTGAGTACTTTTTATCAAAATGATGCAATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGGGAAGAGTTAAAAATTAATTATTCTATAAGTGACCTTTTTGGCTTTTAATTAGAGTACTTACTATATTGTATAAAGCAAAATTATCGAAAATGGTGTAGGAAGAAAATCAACTGTACTATTGGTCCATTGAACGTATTAAGGTGAAGAGATGATTAGAACTATATAACATTGATGCCAAAGTAATTAAGCTAGGCCCTTTTGGAAAAGTGATGCACGATAATTCTGAATTTAAAAAATTGTATAGTGCACAATCAAACCTTTAATCTCTGTTCCAAAAATAAAGTTGAATCTAATTCAGCAAAGGTAAAAGTTTTATCTCATTCATTAAGCGCTCTAGTAGCGCTTTTTGTTTTGCGATGGACTTATCACTACTGATGGATAATCTAAAAAATTAATAATGGAGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16739-17438 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYU01000001.1 Lactobacillus johnsonii strain NM60_B2-8 NODE_1_length_106422_cov_1061.64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16739 29 100.0 32 ............................. ATATAGCGAGGTGATATGTTATTAAGATTTAT 16800 29 100.0 32 ............................. GGTATAGCGAAACAATTGATGATTTGGCTAAA 16861 29 100.0 32 ............................. ATAAGAGCCTTTGGAAACAGGCAGGTGTTGTA 16922 29 100.0 32 ............................. TCTCCAGGTGCCCAAGCATGTTCCATGGATAG 16983 29 100.0 32 ............................. GACCATAGGGACAAAAACGGCAACGAAGTAGC 17044 29 100.0 32 ............................. CTTCAAGCAGTTTCAACTGACGGAATGCTGAA 17105 29 100.0 32 ............................. ATAATATTCGCTTTCTTTAAAACTGAACTATA 17166 29 100.0 32 ............................. TAACCCGGGCACAGTGGGTTGCCATTATATGC 17227 29 100.0 32 ............................. TCAGGGAGGGATGCTTACATTCCGCGGTGCTT 17288 29 100.0 32 ............................. CGCAGATTACTGGTAGTAACAGCAGGTTTACT 17349 29 96.6 32 ..............A.............. GAAGTAATAGGTTTAAGACAGGGTGAAAATAA 17410 29 82.8 0 ..A..........G.......G.A....C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTAAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGATTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCGGATTTTGATGCAAAAAGTACGTATCAATTAGCATTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACCATTACATCTTTTTAAAATGTTGCTACGATAGGATTCTTTTAGT # Right flank : CATGAAAAGTGGTGTTGGCAAAATTAATAACTCGTATTCTCCAGTAAATAAAAAATGCCACATCATTCAAAATATACTATATCTATACAATCCTACGTTAATCAGTTGAATGACTTGATAGCCCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAATCAAAGGACAAGTGAACGTAGTTTATTAGAGAGAAGAACAATGGCGCTATGCTAAAAAAGCGACTCACGAGTCCACTATGAAAGTAGGAGATAGTTGGGTGAACGTGCATAAATACTAGATAGGTGCGGGTGCAAATCTCGCGTTGCATGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTGTATTTTTTCTGGAGGGTAGGACTTAAATATTTAATAAAGATAATCCAGATTATCATCCCATAACTAAATACACTAACTCTACTTGTTATGAAATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 24329-24474 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYU01000023.1 Lactobacillus johnsonii strain NM60_B2-8 NODE_23_length_34821_cov_1948.97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 24329 23 100.0 38 ....................... AGTAATTCATATGGACGAGCAGGGCGCACCACAGGATC 24390 23 100.0 39 ....................... TACTTGCTTGTATTGATGCACATCTTTTAGCTTAGGATC 24452 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================= ================== 3 23 100.0 39 ATCTCCACACACGTGGAGAATAC # Left flank : AGCCTGCGACAAAATTTTTGATACCGATGGTTTTTCGTTACCGACCAACAACGAGAAGTGTTTGGGTTGACACATAACCTCATCCGACGGACAAATTACATAGCCTGAATTTTTTCAACTGGTTAAACGCAAGATATTGTCGACTCAAATCGATCCAATACCTAATTTTGCTTAACAACTACAATCCTAAGATTTCTTATGCCCCGATGAACTGCCGCTTGCGAAGCCTAAAGCAGAAAGTTTACTCTTTCCACAGTAGGGTCCACCATATAGGTCTTATAGGTCTCCTTACCCAACCCAACGTATTCTTATGGATCAGTTAATGCAAGGAGCAGTGCCGCATTCCAAAGTTTGCAGCACCCACATCTCCGCGTATGTGGTTCCTACGTTAATATTCAATTGTCAATGTACTACGTGGACTTGATTATTTTTAGTCGGCAAGCCTTCCGACCAATAGGGTTACCAGGATTTGAACCTGGATCGTTAAGAGGATCAGGAGT # Right flank : CACTAAAAGATCCTTGATTAACTGCTTACCATTAGCATATAACCCTAGAATAAGATGAACTAAGAGATCATCTTATATGTATGTAAATTAAAATTTAGATTTTTTTTGCTGGTTTTTCAGCAATAGAGTTACCAGGAGTCGAACCCGGATTTTCAGTCATTGTTAAAAACTTGGATTTGGAAAAGAATAAATTCATTAATATTATCAAAAAACAAAAATCATAAATAATTATATGACCTAGAAAAAGCTTAAAATTAAAACTAGAAATTAAAGACTGATTGCCTACCTATTGGCAGATAACTCTATAAAAAAGCTTTTCAGCTTTTTCACTACTCTATCCTTGTAGTTTTTCATTACGGGAGGAAAATATAGATATATAAATTATGTTTGCTGATCTCTCGATCAGCAACAGAGCTACTAGGAGTCGAACCCAGATAGAAAGTTTTGAAGACTTTCTGTTTTCCGTTAGCGTATAGCTCTACGTTTAAAAACGTGAAAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCACACACGTGGAGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //