Array 1 219569-221960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEEO010000003.1 Clostridium perfringens strain NCTC8503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 219569 30 100.0 35 .............................. AAGTTTCCCCCTGGTATGGTTTAGTCTTTTCAGCT 219634 30 100.0 36 .............................. TAAGTTGTTTAGCAAATTAAAATTTGCCACTTTAAA 219700 30 100.0 36 .............................. TTAGGTAGTTCAATAACAACACCAACTAATTGTTAT 219766 30 100.0 36 .............................. GCAGTAATCATTATAATACCTCCAAAAAAATAATAT 219832 30 100.0 34 .............................. ACAGAAATTTATTAAAGAATTATACCCAAGTGCG 219896 30 100.0 36 .............................. TAATTATTTATTAAATAATTCATAAAACTTGTCCCA 219962 30 100.0 35 .............................. TACTTACCCTCATATTTTTTAGGTCTACCGTAAGG 220027 30 100.0 35 .............................. AATGAAGAAATGTCTACAATGAGAGTTGAAACGTA 220092 30 100.0 36 .............................. AGTGAAACATAAAAAGAAGAGGGTTAATTAAAACCC 220158 30 100.0 36 .............................. ATAGTTCCGTCATTTTTCCATAACTCAAGAACTCTA 220224 30 100.0 35 .............................. CCCCTTTTATTTATAGAGCAATTGATTGTGATTAC 220289 30 100.0 36 .............................. ATTATTTTCATATTTATAAAACCTCCACAAATAAAA 220355 30 100.0 35 .............................. TGAGCAGTTGGTAAACTAACAGTAACACCTAAAGT 220420 30 100.0 36 .............................. GCCATTTGCTTAGACAATTCACTACTTTTTTCTAAC 220486 30 100.0 35 .............................. AGAGCTTTTTGAGTACAAAAATCTTTTTCTTGGTC 220551 30 100.0 35 .............................. CATCCACCACTTACACCAGCTACACTTCCATTCTC 220616 30 100.0 36 .............................. CCGTTAAATAATATTTTATTGTCTTTATGGTTTGCC 220682 30 100.0 35 .............................. AGTGGAGAAGTAGATTTTGATACATTTTTAGAAAA 220747 30 100.0 35 .............................. ATAACTGCCCAACCAATTTGAGCAGAAATCCAAAA 220812 30 100.0 36 .............................. CAACTTCCAGGTAGGTTATGGACTTGGTTAACTAAT 220878 30 100.0 36 .............................. AGAGAAATAATTAACTCTTTCAAATCAGAAAAGCGT 220944 30 100.0 37 .............................. ATGGCTCTGATGTTGGAGCTTTGCCTTGGGAAATGGG 221011 30 100.0 36 .............................. GCTTTGCAAGAAGTAAGCAGAACAACAATTAATATG 221077 30 100.0 36 .............................. AGGTAAAGCAGATATAATAACTCAAGAAGCTAGAGA 221143 30 100.0 35 .............................. TTAAATAAATTTTTAGTTTTAGGGAAGTTTATTAG 221208 30 100.0 35 .............................. GTTCCAAGGCTAGGCGTTGATTGGTATTCAGAAGG 221273 30 100.0 37 .............................. TTTATCATTGCAACTGTATTCAGTCTAAATGATGAAA 221340 30 100.0 35 .............................. AATATACATAGATAACTGTTGGATAGAAAGAAATG 221405 30 100.0 37 .............................. AGATATAGTAAGATATTGCAGATATTTGACTAAAACA 221472 30 100.0 34 .............................. TCTTTTCCTTCAAGATCTTCCATCTCTACTTTAT 221536 30 100.0 35 .............................. AGTTTTAGAGATAGTTCTGTAACGTCTTTAGTTAA 221601 30 96.7 36 ................A............. ACTATTGCATTAGGAATAAAACTAAATTGAGCTCTT 221667 30 96.7 36 ................A............. ATCTTAAAATCACTCCAGTTTTCATAGCCAGTAAAA 221733 30 96.7 35 ................A............. GATCCTGAAGGATGTACTTGGGGAGAAGAGTGCTT 221798 30 96.7 35 ................A............. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 221863 30 96.7 36 ...............A.............. TGTTCTATGGCCTTTATTTCTATAAGTTCATCTCTA 221929 30 90.0 0 .......C......G.A............. | TT [221952] ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.3 36 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTTTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCTTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATTACCATTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAGCTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCGATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTACAAAATTTGTTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 232163-233905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEEO010000003.1 Clostridium perfringens strain NCTC8503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 232163 30 100.0 36 .............................. TATTCTCCTGTTATAATCCTTCTACTTGAAAGAGAA 232229 30 100.0 36 .............................. AGTGCATGAGAATGTTAACTATAGTAAATTTGAGCC 232295 30 100.0 36 .............................. AAAATATATAAGCGATAGAACTATTGAGAAATATGC 232361 30 100.0 36 .............................. TACTTATAGAGCTAAAAGACAGTTTAGAGGTTCTTT 232427 30 100.0 36 .............................. GCAGATGATAAAGTTGTTGGATAAGTTAGGTTTAAA 232493 30 100.0 36 .............................. TAAACAAAAATAAAAAAATTCTAGCCCAAAAATAAA 232559 30 100.0 36 .............................. TCTTTATGGTATATATGGTTATTTTGGTTTACCGGG 232625 30 100.0 36 .............................. ATATCCAAAATAACACCCCCATAAAATAAATATTAT 232691 30 100.0 36 .............................. TGAAAAACATCTAAACCACAAGGAAAATCAATAGTA 232757 30 100.0 35 .............................. ATAGATATAAATGAAGCTTTGATAAACGTTGCTAG 232822 30 100.0 36 .............................. TAAAATGAGCCGTTAGCAAAAACATATTCAAAAGAA 232888 30 100.0 36 .............................. CTTGTTGGGAATTTAACTATTACCATATCTGAATTT 232954 30 100.0 36 .............................. TCTATAACCCCCGCCCCATCTCTTCCGGGTTGTCCA 233020 30 100.0 38 .............................. TTTTAATAACTTAGCTAAGCTTTATACTTATTAGATGG 233088 30 100.0 37 .............................. TTACCCCACGGAATAGCCCCAACGCTAGCACCACCGA 233155 30 100.0 36 .............................. AGGTATGGTTATTTCTCCAAAACAAGTTGAAAGTGT 233221 30 100.0 36 .............................. AAAATTTTCATCTTCTAAAAACCTCCACAAATAAAA 233287 30 100.0 36 .............................. AAAGATGAAGGGAGTTTTGTTATTATGAATTTGACT 233353 30 100.0 36 .............................. ATTAAACCATTTAAAAATACAAATGAGTTAGTTAAA 233419 30 100.0 36 .............................. TGGTTGATGGTGATGGAGATGCAGATTGATTAATTA 233485 30 100.0 34 .............................. CCTGAAATTTTCCAACACGTTCCTGGTAGAGCAG 233549 30 100.0 35 .............................. TTAATTCTTTTTTCTAATTGGTTAGCATCTGCACC 233614 30 100.0 35 .............................. GCATCAACTATCTTTTTATTTTTTTGAAATTTTCT 233679 30 100.0 36 .............................. TCTTACATTCTAATACTTTATTCCTATATCTACTCT 233745 30 100.0 36 .............................. AGAGTATGTAATTAAAGCAAGAGATGTAGGTGTAAA 233811 30 100.0 35 .............................. TGGTTTTGATACTCCTGTTACTGAAGTTAAAAAAA 233876 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATCTGGGAATGGCTTTATTTTTAAGTTTTTGTCTTTTAGCATGGATGTATGGAGAAAACTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAGAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTGCTCTATTATTTTATTAATTATTTATATACTAAAGAATTATGATAGAGTTAAAAGCTAATAATATAATCAAAAGCAAACCAATATAATTTAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //