Array 1 135575-134146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026364.1 Proteus hauseri strain 15H5D-4a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 135574 26 100.0 35 .......................... CCGAAATTAGACGCGCTCATAATGAAGAGTGTTCG 135513 26 100.0 35 .......................... CCATTCATCTTGTCGCTTCAATACATACTGTTTAA 135452 26 100.0 35 .......................... CCGCCCATCGTCATGGTCTTTGGTTATTAACCACT 135391 26 100.0 35 .......................... CCGTCGTTTAACAATCAGTCCTGAAATATTATAGA 135330 26 100.0 35 .......................... CCGGGAGAACCTAGACCAGATTACCGAGACGTCAT 135269 26 100.0 35 .......................... CCGATACTGTTTCTTTCATTAGTGAAGTGTTGATC 135208 26 100.0 35 .......................... CCGCAGGTGCAGCTTCATCTGCTCCTCTACTATCA 135147 26 100.0 35 .......................... CCGCGCTTATTAAAAATGACCACACTGGTTTATCA 135086 26 100.0 35 .......................... CCGGGATTTCGCGGCCTACTAGCGGAGCACAGTCA 135025 26 100.0 35 .......................... CCGATAAATGCGCACCATCTCTTTTTCTGGCATTT 134964 26 100.0 35 .......................... CCGTTGATAGGCGGTGTTGAGTTACACCCCGGTGA 134903 26 100.0 35 .......................... CCGGATTTCAGTTGCGTAACGGTAAATTAATGACA 134842 26 100.0 35 .......................... CCGTCACAGTGGGCGCGACTTTATCATCAGCAGAT 134781 26 100.0 35 .......................... CCGTTTTTAGCGTCATACTCAAGAGCTAACTCTGC 134720 26 100.0 35 .......................... CCGTTCGGGTTTTTTATCTGCTGAACAACCGCTTA 134659 26 100.0 35 .......................... CCGTATCGTCATCTTACTAATATTCGAACAATGGA 134598 26 100.0 35 .......................... CCGATTAATAAATTACCATCTTTAGTTTTACCGAC 134537 26 100.0 35 .......................... CCGATGAAAAAAAAACCACGCATCATGACCACTGA 134476 26 100.0 35 .......................... CCGACTGCTTCTCCAAGATGAAGATGAATCATAGA 134415 26 100.0 36 .......................... CCGCAGTGCTTGGATAAAGTAGAAAAGCAAGCATCC 134353 26 100.0 35 .......................... CCGATATTAGGGATGGTTCTGACTGTCTCCCTGAT 134292 26 100.0 35 .......................... CCGTTTGATGGAGGTTACGCTAGAGGGTTGACAAG 134231 26 100.0 35 .......................... CCGGGACATGGTTACTGGGAGAACTTTTCAGGTGA 134170 25 92.3 0 .......................T.- | ========== ====== ====== ====== ========================== ==================================== ================== 24 26 99.7 35 GTGTTCCCCGTATACACGGGGATAAA # Left flank : AAACATTAAATAAGCTGATCCCTTTAATCGAAGAGATTCTTTCGGCTGGAGAAATTTTTCCTCCGGAGCCACCTTCTGATGCTCAACCTCCTGCAATTCCCCAAGCGCGGCCTTTTGGTGATGAAGGCCATAGAGAAAAATAGCAATGAGTATGATTGTGGTTGTGACGGAGTCTGTACCTCCTCGATTACGAGGGCGATTAGCGGTGTGGTTATTAGAAGTTAGGGCTGGTGTTTATATAGGTAATGTTTCCGCACGAATAAGAGAAATGATTTGGCAACAAATCAATGAGTTAGCTGAAAATGGTAATGTAGTTATGGCATGGGGAACAAATACTGAATCAGGCTTTGATTTTCAAACGTATGGAGAAAATCGCCGTGAACCTATTGACTTTGATGGCTTAAGATTAGTGTTATTTAAACCGCTAGAAGATGATGAATAATAGTTGGTAGAAATAAAAATGTTTTTTTATTTAGTTAAATCAATCGGATATATTTAGA # Right flank : CTGTATATAGAAATAAAAATCAAAATTAGAGATATCCTTTTTTCATTAAGCCCCGTTTTCTTTCCTTGGTTACTTACACCCCTTATCTCCATTTTTTGTTATTGATAGCTTAATTTAATACCTAGAGCTGATAATAAAAAACTAACTAATTATTCTAATAAAATTACGATAAATCCATTTATGTCTTGTTTTTTAAAGAAATAGACACATTTATTTTAAAAAAGTAACAAGTGAATTTATATGTTTATTTTATGAATAAAAATGCTTATTATTCTTGGTGAATATTCACTGTGTGTATATTTTCGTGCCTAATTAATTACAACAAAATAATTGGTTCAAGGTTTTACATCACAATCACTAAGGAAAAATAAGATGTCTTTTGGTTTACGATATCTTGCGTTGGTACCTCTTTTGGTTATCACTGCTTGCCAACAACCTATTAATCACAATCCATCTGTAACACAAACAGCGCAGGTTCAACCTGTTATTGTTAATAACTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACACGGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145342-144395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026364.1 Proteus hauseri strain 15H5D-4a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145341 29 100.0 32 ............................. CATAATGAGAAGTCACGTCTAGCGGCTCCCAT 145280 29 100.0 32 ............................. GAAACCGAAACCATCACCGCAACATGCACATC 145219 29 100.0 32 ............................. ATTTTTCAAAATTGCGCGATAACTTACCAAAT 145158 29 100.0 32 ............................. TAGGTCAATATAGCCAGAAAGTGAGGAAATTT 145097 29 100.0 32 ............................. GTCAATGATAATGGTGAGTTTGAATATGCCAT 145036 29 100.0 32 ............................. ATTATCTTGAGTATGCGAAGTTACTTTTACAG 144975 29 100.0 33 ............................. CCCCTGTATGACGTCGAAACCTATTTACGACGT 144913 29 100.0 32 ............................. TACAGAAAGAATTTTATTTGCTGAACATTATC 144852 29 100.0 32 ............................. TCGCCAGCTAATCCGCTATTAATTAGCTTCAT 144791 29 100.0 32 ............................. CTGACTGATGAGCTAATCGCTAAGGCAAGGGA 144730 29 96.6 33 .............A............... CGGATAATGCGCTAACAGTGGCAAACGGTGTGG 144668 29 100.0 32 ............................. CATTAGGTTCTGGCGTTCTTCGTGGTGAAGAA 144607 29 100.0 33 ............................. GCATGGCATGGAAACATCAAGCAAAAAAAAATC 144545 29 100.0 32 ............................. GACTTGAATGGGAATATATTGAGATTGATGAT 144484 29 93.1 32 ........T............G....... CGGATCACTTTTTTAACAGCAATAATTTTTCG 144423 29 72.4 0 ........T....AT.......C..TTAA | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : AGTTCCTAATGCCAAGCCAGCCTTAGATTGCCCAGTTGTTTTCCCTTATGCACCAAACGCCGTATTAGTTGGTTTTTTAAGTAGTTTTGCGGCAGGTGTAATTGGCATGTTTGTGCTTTATCTGTTGGATTGGACTGTTATTATTCCGGGTGTTGTTCCACATTTCTTTGTGGGTGCAACAGCAGGGGTATTTGGTAATGCAACGGGTGGACGTCGTGGTGCAATATTAGGTGCTTTTGCTCAAGGTTTATTAATTACTTTCTTACCTGTATTCCTATTGCCAGTACTTGGTGATATAGGGATCGCGAATACAACATTTAGTGATGCTGACTTTGGTGTTATTGGCATTCTATTAGGTATTATTGTTCGTTAATTTTTTCCAGCTTAAAACTAAACTAAACGCCTTACTTGGTTTAATTAAGTAAGGCGTTTTTATCTATTTTTTTGGTAAAAAAGAGAAGGTTAAATTTCTTTTTTATATTCAATCTATTATGATTAGA # Right flank : ATTGTTACGCAATATAATTATATTAAGTGTTTTTTAACAAAAAAATCACATCCCGAAGGTTTTTGGGCTATGCCTAAACTGAGTTCTAAAAATATAAACAGGGGAAGATCTAATTTTAAGTATTAAATTAAGAAAATAGTTGCTATTCATTATAGACTTTAAATTATAAAAATTAGTGATTAGGTAGATATGAATACAGACTATTATAATTATTGGGGTAAATTTAAATCAGATAATAATAATGAATATTATCACTTACTTCCTTATCATAGTCTCGATGTGGCTGCTGTTGGTGCAATATTATTTTCAGCAGATACAAAGATAGTAAAAGATATTTCTAATTTTTTGCAGATTAGCCCCAAAAGCTTTTCTAAATTATTTTTATTAATACTTTCTCTTCATGATATCGGTAAGTTTTCATCGTCATTTCAATATATTAATCAAAATATCATCGATAAAAACCAAGTTCCTGAAAGTAGATTTTCTTACGATGGAAAAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //