Array 1 3117105-3118057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIG01000004.1 Xanthomonas albilineans strain PNG130 Xal-PNG_130-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3117105 31 100.0 33 ............................... TCTGAATTCGAGAAAGATGTAAATGAGTTAATT 3117169 31 100.0 36 ............................... GTTGCGCACGCCGCCGCGCACCTTGTCGTAGCGATT 3117236 31 100.0 36 ............................... TCGTCTGCGGCCCAACCGGATCGGGAAAGACTACGG 3117303 31 100.0 35 ............................... CGGTGAAGCTCGTCGTCGACGTTCTTCGTGATTCG 3117369 31 100.0 37 ............................... CTCTGCGTCTATCGCCTCGGCGGTAACAAGCTGCTGG 3117437 31 100.0 34 ............................... CCATCACGGAGAGGATCGTGACCATTGAGGATGG 3117502 31 100.0 36 ............................... AATGAAATCAAGAGTACCCACGACTTCGACAGGATG 3117569 31 100.0 34 ............................... TGGCATCGACAAGACCGATCTGCTGGCCGGTGGT 3117634 31 100.0 35 ............................... GCGCCCTCGTGGAATTGGTTCGCTGGTCGGATCGG 3117700 31 100.0 33 ............................... CCTGTATTCGGTCTGTTGTGCGGCTAACGCGGG 3117764 31 100.0 35 ............................... ATCACGCTGTGGCCTATGCCCAGTTGCTCGGCAAG 3117830 31 100.0 34 ............................... TTGGCTTCCTCCGCCATGTCCATCTTTGCGTCAC 3117895 31 100.0 36 ............................... GCAAACGCCAAGCTGCTTACCCTTTTCGTAGATACA 3117962 31 96.8 34 ..........................A.... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3118027 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ===================================== ================== 15 31 99.1 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAATCGTCGCATGATGGTCTTGGTCAGCTACGATGTCAGCACCAGCTCACCGGGAGGCGATAAGCGCCTGCGCAAGGTCGCCAAAGCCTGTCGCGACCTGGGCCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGGCAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTATCACCTCGGTGCAAAATGGGAAGCGCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATGAAAAAGAAAGCCGACTCTCAGACCCGCTCCGCCCGGACGCAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGACTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCCGTGCCGCGCGCCAACGCAGTGTGGTAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGACCAGCGTGACGCGGCGTGCGGATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCGCCGCCGCGCGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAAGAGCGCATCGTTGGGCGCGATCACCACCACTGGCATGGTCGCGTCCACCAAAGCCAACGGGCCATGCTTAAGTTCGCCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCACCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3298037-3298245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIG01000004.1 Xanthomonas albilineans strain PNG130 Xal-PNG_130-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3298037 28 100.0 33 ............................ GGTAGAAATGGCGCTAACCCTACAACTGTCTAT 3298098 28 96.4 32 ..C......................... ATAGTCGGTCGTCCCGTCGCTGTATTGGACGA 3298158 28 100.0 32 ............................ TGTACAACAAACAGTTCTGGGCCTATTTGGAG 3298218 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 4 28 94.6 33 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGCGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGGCTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCCGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCAAGGCCAGCGCCTCCACTTGGTGTTCGACGTGGATATCCTCCGGCACCTCGCTAACCTCATCGATCAGCTTCGGGACTTCATGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATACGATTACGCTCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTCCGCCAGGATCGGATAGCCAATCCCCTCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3463311-3462981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIG01000004.1 Xanthomonas albilineans strain PNG130 Xal-PNG_130-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3463310 28 100.0 32 ............................ ACCCACCGAGAACGGCCTCCCCAGTCTGAGGG 3463250 28 100.0 32 ............................ ACTCACCGTCAGATTGCCCGTGATGTTCACTG 3463190 28 100.0 32 ............................ TAAATAGGTAGTTAGGTTAATATGCTCTTGTG 3463130 28 100.0 33 ............................ CGACATACTGCGGAAGCCCCGCGCCGTAGTCTT 3463069 28 100.0 32 ............................ ACGTCAAGATCGGTGACCGTTTCTATGCCCCA 3463009 28 96.4 0 .........................G.. | C [3462983] ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACAGATGCACAATGACAACGGTCATGACATGCTCGATTCACTGCCGTTTAGGCCGCTCAGAGAACTGTCTGCACTCGCATGTAGCCATGACGCTATGATCTGGGAGCCAATTTTGGCAATAGGAAGAGGGGTTCTACATGAAAGCTATTTTGTTAGCGGCAGCACTGATGGCTGCCATCGCCCCAGCGTTTGCGGATGTTCACGTGCGCGGCTATCACCGTTCGAACGGCACATATGTAAAGTCGCACTATAGAAGCTCCCCCAGCCATAACCACACCAGCCACTCTCACCGGAGTCGATAATCCTGAGGATT # Right flank : TGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGTCCCCCCTGCAAGGAATCAACATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGCACCAATCTAGGCGAACCCAAACCACAAGGTGATCTGACAGAGCCACCCGACTATATGAGCGAGGGTGCAAAGTCAGCCTGGCGCTACGCGCTGGAATGCGCGCCACCACATCTGCTCAAGCGCCTGGACATGTCGGTGCTGGAAGTGTGGGCCTGCGCCGCTGATCTGTATCGCAAGGCACAGACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCACCTAACACCGGTGTGCCGATGCAGTCACCGTATCTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAGGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3470718-3470509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIG01000004.1 Xanthomonas albilineans strain PNG130 Xal-PNG_130-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3470717 28 92.9 32 A...............A........... AAAAGGCCGAAGCAATCGCGAGGTCTTCGCGC 3470657 28 100.0 32 ............................ TCAGTGAACACATGGTAGCCACTGCCGACAAT 3470597 28 100.0 32 ............................ CGCCGAAGAACTATGGGGCCGACATCGCCACA 3470537 28 96.4 0 .........................C.. | A [3470513] ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TGCATTTTCTTCAGCACCACTGCGGGGGTGTCGATTGGTGTCACATAGTGGCCGCGATCGCCCTTTTTAACCCGCACTGCGCCTGCGTCGATGCTGGTGCCCACCAGGGCCTGTAACGTATTTGCGTGGGCCGACTGAGCCGACCCGTCGCTGGCGGCGTCCAGCACCACTTCTTTGCCTTCATCCAGCGCCTTGCGGGCCAGCTCCAGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAAGCGATCTGCCATCGCTGTCACGTATTCAAGACGGCCCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGACATGCTCG # Right flank : TGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCTCCCTCAATTTTTCGCGCGTGCAAAATGAAACAGGGGGGGGTACCCNGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGCACCAATCTTGGCGAACCCAAGCCACAAGGTGATCTGACAGAACCACCCGACTATATGAGCGAGGGTGCAAAGTCAGCCTGGCGCTACGCACTGGAATGCGCGCCACCGCATCTGCTCAAGCGTCTGGACATGTCGGTGCTGGAAGTGTGGGCATGCGCCGCTGATCTGTATCGCAAGGCACAAACCGGCATCAACAAGAGCGGATTGCTATTGAAGGCACCCAACACCGGCGTGCCAATGCAGTCACCGTATTTGTCCATCGCCAACAAGCAGGCGCAGATCATGACCAAAGCAGCAACCGAGATGGGATTTACGCCTGCATCGCGCTCGCGTGTCACGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //