Array 1 5719-4694 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJOHR010000083.1 Campylobacter coli strain 1921C12 NODE_83_length_7737_cov_51.816580, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      5718	    36	  97.2	    30	T...................................	AAATTTGATGATAGCTTAGAAGTTGATTTG	
      5652	    36	 100.0	    30	....................................	AAATCAGATCAATTTATGATAGATGCTGAT	
      5586	    36	 100.0	    30	....................................	CAAAGAATAGAAATAGTGGTAACTTATCTA	
      5520	    36	 100.0	    30	....................................	AATTTTTAAACTATTTGTGTTTGCTTCAAA	
      5454	    36	 100.0	    30	....................................	TAATTATTTAAATCATCTTTCTTATTTCCA	
      5388	    36	 100.0	    29	....................................	TTGTCAAGTTTCAAGCGAAGACGCAAAGC 	
      5323	    36	 100.0	    30	....................................	CACTCATCTTTAAATCTTGTAGCCCAAGTT	
      5257	    36	 100.0	    30	....................................	ATGTTACATCTATTTGTAGCATTTACTTGA	
      5191	    36	 100.0	    30	....................................	AAAATCTTTAAATATCAATGGAGTAGATTT	
      5125	    36	 100.0	    30	....................................	GAGCCTTTGGAAAACAATGTTTTTATTATA	
      5059	    36	 100.0	    30	....................................	CTTCGGCACTAGCGAAAGGACTAAAAGACA	
      4993	    36	 100.0	    30	....................................	ATCACAGGAGCAAATTCGCAGCAAGTCGCT	
      4927	    36	 100.0	    30	....................................	ATCGAAGTAGGTCAAAATATACCTCAAAAA	
      4861	    36	 100.0	    30	....................................	TTATAGTCGTGAAACAAGGGTTGCAATAGG	
      4795	    36	 100.0	    30	....................................	TTTAAAGGAATTATACAAGGATACGCTGAT	
      4729	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	                              	       

# Left flank :   ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAATGTGGAATTTAAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTAGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGCTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGT
# Right flank :  AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:77.78%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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