Array 1 12694-12993 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYR01000026.1 Campylobacter jejuni strain BCW_6882 346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12694 36 97.2 30 ......C............................. TTCAGAGCAAGAATATGCGAACTGGATTAA 12760 36 100.0 30 .................................... ATTATTTTTAATACTAGGTCTAGGTTATGC 12826 36 100.0 30 .................................... TCGCTTCTTTCATTTTGAAACCTTTATGCT 12892 36 100.0 30 .................................... CTTTCAAAATCAATTTTGCAAACTTTAAAA 12958 36 80.6 0 ............GG.T......T..T..G......A | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 ATTTTATCATATAAACAATTAACAAGAGACTAAAAC # Left flank : GTAAGAACTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCT # Right flank : ATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCACTTAAGCCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATATAAACAATTAACAAGAGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 30463-30295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYR01000051.1 Campylobacter jejuni strain BCW_6882 373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30462 36 97.2 30 T................................... TTTACAACTATGTTTGAAAAGATAGCTTTT 30396 36 100.0 30 .................................... AAATTTTTTATAAACTCATCATAAGAACGA 30330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTCTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCATAAATTTCAATAAATTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGG # Right flank : AGATATTTACCAGATAATGAAAATTTCAGGGTTTTTTAATAAAAATAGCAAAAATTGCTATAATTTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCTCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGGTGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCGGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTGCTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4789-4956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJYR01000069.1 Campylobacter jejuni strain BCW_6882 393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4789 36 100.0 30 .................................... TGGTAAAATTCAGATAATTTAGAGTATACA 4855 36 94.4 30 ........................G....A...... TTTAGATTTTATAGGCAAAGCATTTATATT 4921 36 97.2 0 .........................C.......... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Left flank : AGGATAATATATATAAAATAAATTCTTTATTTAATCAAATTTTTACAGCACAAGATTATAAAAATTACAAATTAAATAATGATAAGACATATGCAATAGTTTTCAAAAAAAATAAAATAAATAATTTTATTTTAAATATACTAAATAAACTAGATTCAAAGTATTTCTTTTATTGGAATAGGGAATTAAAAAAGCATTCAAATCCAAAATAATGCAAACCAAAAGCCACGCCTCTTTCGGTTCAATGTTTTTTGTTGCAATTGTATTAAGCTAAGACTAAGCGTGGTTTATTTATAATTATTTCGGTTTTTTAAGTGAGATAATCAACGAGTTTGATTATCTCGTTAATTAATTCTAAGACAAGAACTAAAAACTCAATGATCTTACTCATCATGCCTCCTTCTTATAACCGAAAGAGTAGCCATACTTAATACGCTTTAATTGTAGTATTTTTAAATGAATTTTTATTATCTTGTATTGTTTTATTTTACAAAAATTTT # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTCACTTTCAAATGGTGTTTTTTACCCATTCAGATTCAACTATTGAAAGAACTCTTGCAGTTTTGTAAATATTATCATGCGGATTTAGTATAGTTCTCACGGCGTAATACTGTTCGTTTTTAACTTCCTCTTTTTCAACTACAACTATCGTATCAACTGATTCTTCTTGAAGTTTCAAAGGAATGTATAAAACTACTCTTTGCTTATAAGCTGCAGGAATAATCATCTTTTGAAGATTATAATTATCTTTGATGATTTTCAATTCACCATTAATAATGTGTCCTATGAACCTATCATTTAGTTTTTTCACAATTTCAGGTAATCGCTCTTTTCTCTCAAAAAGATGCAAATGATTTACCCTAAAATCCAATTTACTGTCAAAAATGATTTCATTTTTGAATGTATCATAATCGCTTAAAGATTTAGGTATTTCTAAATCATCTAAAACTCTATCTCCATTAGAACA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //