Array 1 457046-457741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHG010000001.1 Listeria welshimeri strain FSL W9-0648 NODE_1_length_463161_cov_170.126498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 457046 36 100.0 30 .................................... ACTGTTCGTTTGGGTGTTGTAAAGCTAATT 457112 36 100.0 30 .................................... AATGTTTAGCAGCAACGGCAGATTGGTTTC 457178 36 100.0 30 .................................... CTCTAACATTGTTTTATTAACAATTTGAAT 457244 36 100.0 30 .................................... TGAATGGCGTGAGGTTCGTACACTTTACCG 457310 36 100.0 30 .................................... AATATCTGTTTGCGGTCTTCTAGTCTAGTA 457376 36 100.0 30 .................................... TGTTAAACTTACTTTTGTCCCAAGCTCGTT 457442 36 100.0 30 .................................... TATACATGATAATTTAGATATTCTAATGGC 457508 36 100.0 30 .................................... CTTTCTTATAAAATACTCTTCCGGGCATTA 457574 36 100.0 30 .................................... CACCTGTTCAACAACTTTTAGCGCTTCTTT 457640 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 457703 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [457728,457734,457737] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTACTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGTTAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAATTATTAATAATTAGAAATGAAAACCGATATAACTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 315277-315747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHG010000004.1 Listeria welshimeri strain FSL W9-0648 NODE_4_length_331176_cov_152.827000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 315277 29 100.0 34 ............................. TGTTATACATTGTATTTTCCTCCCGTTCCTTTAC 315340 29 100.0 36 ............................. TCTTCAGTGATATGTGCATACGTATTTAATGTAACT 315405 29 100.0 35 ............................. GACGCTATAGCAAATAAAATAACTGATATTGAAGA 315469 29 100.0 36 ............................. TCCGCTGATATGATTGTTTTGCTAGCAGATGCTTTA 315534 29 93.1 24 ....................G..T..... GGTACCTCAATACCTTTCTTCAAA Deletion [315587] 315587 29 100.0 36 ............................. GTACGAGCGATTAGCTGTTGAATCACAACAGGCGCA 315652 29 96.6 37 ................T............ TAGAATTTAAATAGTTCATCTACGTTAAAGTTTGAAG 315718 29 86.2 0 .............C..A.C.........G | T [315744] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 97.0 34 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : GTACTACATAAAATGTCACTGTACCATCTTTTTCTTTCTCTTTGCTGTCTGCTTTGCTCGTAGAAGTATCATTGCCACAACCCGCAATCAAAAGTAATGCACAAAACACCATCATTAATTTCCAAATATTTTTCTTCATCTTTTTCTCCTTTTTTATGTTTTTTAGCAAAATAAAAACCCAGATAAATCGAAAAAACAGCCCCAAAAGCCAATTTTCGTTTTATCTAGGTTATGCCCAAAGTAGGTAACATTCCTGAATAAGGATATTTGTTTATAAGATGATTTTAGCATGAATAGAAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTAGGGACCGACAGATTTACGGGATGCATTGGGAGAGAATGAGAGTGGGTGGTGAATAGTAATTTTAGGAAGTTGAAAAGCCGGTTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGTGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCCATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGGATTATAAATTCATTCAGCAACTAAAACATAGATAGTAGCACTATCATAAATTTCCAGTCAATAAAAAATTAAAATCAAATCCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAATAAGTGAAAAATTTCAATTAATAATATGGCGAATGCTAAACAAAACACTAGTATTTTCAGTGGTTTGTTTTCGCTAGCATTCACTCTTTGTTTGTGTTAAATTAAACACAAACAAGAGATTGGGGATGACAAAATGAGATTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTATAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAAAAATCTAGTCCAGAACGATTCAAAGATTTATTTGGTAGTAACAAGCGGAAAAAATACACTTTTTCGATATACCTGCCTGAACCTAAAAATAATAAAAATGAAATTCACCTTGAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 325517-327215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHG010000004.1 Listeria welshimeri strain FSL W9-0648 NODE_4_length_331176_cov_152.827000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 325517 29 100.0 35 ............................. CTTTCTGCATGAGCTAAATCCGGATAACAAAAAAA 325581 29 100.0 35 ............................. TTTTTTTATGCGGATACTTGTGTTAATCTTATTGA 325645 29 100.0 35 ............................. CAAACAGTCGTTGATGAAATCTTTGAAGATTTAAC 325709 29 100.0 36 ............................. GAACTCAGATATGGATACGGCGATGGTGTTTTCGGC 325774 29 100.0 36 ............................. AAGAATTACGCAGGACGTGTAACACACAACACACAG 325839 29 100.0 37 ............................. GGATGAGGTTGGTAAGAAAATACCGTCCGGGAACAAA 325905 29 100.0 36 ............................. AGCATCACTTAAGAAATCATTGATTGTTGAATTACC 325970 29 100.0 35 ............................. CAAATTGCTGATGAAGTGTTAAACGATGCTGATAT 326034 29 100.0 34 ............................. TGGGGAGATGCTAAAATAACTGAGCAAGCACGTA 326097 29 100.0 34 ............................. GTCGTTTTTGCCGCGCTTGCCACAGCGCTAAACG 326160 29 100.0 37 ............................. TTTACTGTGAAAATACCCGACGCAAAGGTCGACAAGC 326226 29 100.0 34 ............................. AGCTTTAAAAATATGATGTACATGCCCGCGACGA 326289 29 100.0 38 ............................. TCAGGAACAGGTAGTATTGCGAGATCACTAAGAATATC 326356 29 100.0 35 ............................. ATTTTTAAGGTTAGTAGACAATGTTTGATTTTTCT 326420 29 100.0 37 ............................. ATAACTTTAAAAGCTTACGTGTAGCAAAACGTATTGC 326486 29 100.0 37 ............................. CTATCTCCCAATGGTGCACGTTTTCAGAGGTCGCATA 326552 29 100.0 34 ............................. AGTTGTATCTGATAAAGATGAGTGGTCTGGCTAT 326615 29 100.0 34 ............................. TTCCCCATTGATCCATCAAATGATTAGGGACGAC 326678 29 100.0 34 ............................. TCCGTACCACTTCGTTCTATAACTTGTTTCTTAT 326741 29 100.0 34 ............................. AAACCTCGAACATCCCATCCGTGAATGCTGACAA 326804 29 100.0 34 ............................. GTAGCAGAATTTTACGTGGAACGCTGGGATGATT 326867 29 100.0 35 ............................. TTCGTTCCACTCAAGCAACGTATAATATTTATCGT 326931 29 100.0 36 ............................. TACCATGGAAGAAATGGCAATATCACCTCGTTCTTC 326996 29 100.0 35 ............................. CTTCTTTAGGAATTTGGGATGTAGGAGCTTTAATT 327060 29 96.6 33 ...........C................. GGATGAACTAATGCTTTTTGATGAAGGCTTGAG 327122 29 100.0 36 ............................. ATTTTAGGACTCTAAGTAAAAGGAGATTACACTAAT 327187 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 99.5 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATAACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAAAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCCCTCAACAATACACCCCCCAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAATCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //