Array 1 58687-58459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTFJ010000002.1 Lactobacillus intestinalis isolate A49_41_LA_DSS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 58686 30 100.0 37 .............................. TCTTTTTATCGATTCGAGTATCCTTAGTGATAGTATC 58619 30 100.0 35 .............................. TTTAATGCGTTTGGTACTAGTCGCTTGAGGGTAGT 58554 30 100.0 36 .............................. GTCCCTAACATCAAGTAAAAAGCGGCTCTCGCATTA 58488 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCGTATGAGCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGCTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACTGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGATATGTGGAAAAAACACGGAGATCGACAGATGAAAAGAATGCCCATATAATACTATTGTTGAATTATATCTAATAAGGTAAGTAATCTATATATGCTTTTTCGGTTAGGGCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : GTTTACTAACACAACACTTATTCTTTCATTCCAAATGTTTTTCATGTTTTTATCTATTCTCTAAAATTCTAACTATAAAAGGAGCTCAAGAAAATTTTCTTGAACTCCTTTTTCTTTTATTTAGGCCAATTCTTAGCTAATTCTTTCAAGAAAGGTTGAATGACCGATCTTTGATTTTTTAGATAAGTACCATACAATTCGATATAATTGTCTTCATCCTTAATAGGTACTAAAATTCGATCATCATCGTCTCTTTCTTTATAACCAGTTGCTAAGGTTAGGTTCGTTCTAAAAACCGGAAAATTGGAATAGTGGGTTAATTCATCTAAAGCTGGCAGATCTTTTTGATATAAAAATTGTGCTTCTGGAATATGATCTTCAATTACTTGAACCCATGGCCCAATATCTTGAACTACTAAGAAGCTCAACCCGGCTAAATCTTTGAAAGTGACACTCTCCTTTTGGGCTAAAGGGTTCATTTTGTCAATGCGAACGGCTAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 63562-63198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTFJ010000002.1 Lactobacillus intestinalis isolate A49_41_LA_DSS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 63561 30 100.0 37 .............................. ATCTCCTTGTTGAAATTTTTAATATGATTTTATATTT 63494 30 100.0 36 .............................. ATGCAACGGGGATGCTCGAAAAGCACTTGTGCTTAG 63428 30 100.0 36 .............................. AATTACCAAGAATACGTTAACAAACGTATTTTCGAG 63362 30 100.0 38 .............................. TTTTCCCAGTCAACGGCTGGAACAGCTTCACCCACATA 63294 30 100.0 37 .............................. GATGGTGAATATGTACTTCTTGCTAAACATTTAGGGC 63227 30 86.7 0 ..................G.A...A....C | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.8 37 GTTTTTATCTAACTTAAGAGGAATGTAAAT # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGAGGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATATACCCGTAAATCATAGCGCGTATATACCAGTTCAAATGTCTGAAGATGTGGGTCTAGAAAATGATGGTGTTGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGTTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAATCATATGTTGATGAAGATGGCAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTCCAATAATCAATTTTTCACCTGGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAGTAATTTTTATCAAAAATAGGATTATATTTAAGATGGTCGACAGAATCGGGACTGTAAAGTATTGATTTGTAAGGTCTGTCGAAGGGAACA # Right flank : GAAACAACAGGATATTAGTTAGTAAAGAAAATTTAGAGAATAGTGATACGAGGTATATTGAAGTGCATCTTGCATTTACTCTATAAAATAGAAAGTGTGGAAAAATGAATGACTATTTAGGTAAGTCTTTAAATCAATCTGAAGGAAATCACTGTGAGACGATTGTAGAACATACTAATAATTTGTTGAGGCAATATAATTTATTGAAACAAACGTATCCTGACATATTTCAAAACTTTTGGCTTTGTCAGAATAAGTTCAATAATATGTTGGAGCAGCCAAATATTCATGGCAAGGATGACTGGCGACTCTTAGAAATTGCTTGTGCATATCATGATTTAGGTAAAATGAATCTACGCTTTCAGAAAAAAGTAAAGGCCGGGAAAAGTTATTGTGAAGATGAAATTCCTCATGCCTTGTTAAGTATTACAATGCTTCCAATTGAGGAGTTGAAAAAACAATATACAAAAGAAGAACTCATAGCCTTAATTTTTGCAATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 111466-109787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTFJ010000002.1 Lactobacillus intestinalis isolate A49_41_LA_DSS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111465 29 100.0 32 ............................. TTATTAAATCCAGATTGTCCTTTTGATAATCC 111404 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 111343 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 111281 29 100.0 33 ............................. AACTTCTTCTTCAGTCACGTCACGCGAAAAGTA 111219 29 100.0 32 ............................. AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 111158 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 111097 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 111036 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 110975 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 110913 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 110852 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 110791 29 100.0 32 ............................. TAGAAATCATGTTGATGAAGAAGATAACCTGA 110730 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 110669 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 110608 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 110547 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 110486 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 110425 29 100.0 32 ............................. ACCAGCAGTGGCCATGCTCATTCCTTTTGATA 110364 29 96.6 32 .....T....................... AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 110303 29 100.0 32 ............................. TTACTTTTGTCATTTTTAGTACCTCTTTCGTT 110242 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 110181 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 110120 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 110059 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 109998 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 109937 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 109876 29 100.0 32 ............................. AACCAGCAACAACAGCTTCAGGCAAGAATTCT 109815 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AAATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAGTTTCTTGATAATTATAAGTTGAGTACAGTATTGTCAGAATATAAAATTGAAAATCAAAACCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGGAGGAAAATTAAAGCTTTAAAGTTTTCACCGGTAATGAATTTAGCTTTAGATAATTTTCAAAATTAATTTGAACCATTGTATACGATCAATTGGGAGAGGTCTTTCTGAGTATTCCGGAATTATGAGTAGTTAAAAATAGGTTTACATTTAAGTAATACTATAACTTGAAAAAGCACTTAAAGAAGTAAAAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATTATGAAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCGGCCTTTGTTTAGT # Right flank : GGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAGTAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGGCACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAAACAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 221454-222338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTFJ010000002.1 Lactobacillus intestinalis isolate A49_41_LA_DSS, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 221454 29 100.0 32 ............................. TTTTAACTTTACGATGTTTCAGTATGTCAAGG 221515 29 100.0 32 ............................. AATAACGTAATTACCATCACCGGTAGTTGGGA 221576 29 100.0 32 ............................. AGAGAGTTTTGAATGATTGATCTACTCCATTG 221637 29 100.0 32 ............................. ACAAGTCCCATAATTACATGAATTGGGTTAAA 221698 29 100.0 32 ............................. TGACTTAGCATCTACTACTTCAAAAGGCTTTG 221759 29 100.0 32 ............................. CAATGGGGGATGGGTACTTAATCCCAGAAAAA 221820 29 100.0 32 ............................. GATAAATTGGCTTCAGTTGCACGTGTTTTAGG 221881 29 96.6 32 ............................A AAGTGTTGTAGCTGGCCACCCGGCTATTTTAG 221942 29 100.0 32 ............................. TACCGACCCTGACTTAATTAAAGCAATCAATG 222003 29 100.0 32 ............................. ACTTTGTTGACTCTTTTATTTACCAAGTCGAA 222064 29 100.0 33 ............................. GTAAATTCATTGTAGTTAATGAATCCGATAATT 222126 29 100.0 32 ............................. ATAAACCCAAAAGACATACAGTATGTTTTAGG 222187 29 96.6 32 ........T.................... CAATATAATCAGTCTTTAGCCAATGCTGAGGG 222248 29 100.0 32 ............................. TATTCAGCGTCTTTATCTTCAGTAGTGAAGAT 222309 29 86.2 0 .....................T..T.TT. | A [222330] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATTGAAGGCTGCTAATCGTGAAAAAACTCAAAATAATCCACTAGAGCTTGCGATGGATTTACCTGAGTCAACATGACCTAGTTTATTCAAACTTGGACCATAATCTTAAGGTAGTCAATGAGGACTTTTTTTATTTTAATATGGCGGTCAATTTTCTAATAAAAAAATTGCTCCTTTTCTTTCAGAAAGAGGGTATGGCCCAATCTCCAATTGCTCGGTGAAATTATTGCTGAAGATGGTAGTTGATAAAAGTGATGCGGAAATTGTATAGTTCAATAGATGTAGTAAAAGCCCTAACTTGTAATAATGATCTTCATAAGAGTGCTTGTATTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGCTATATATAGAAGAATATTTGATATAATTGAGTCGATGATTTGATGGGGAGGAAGTACAAACTAAAGAAAAATTGCTTTTCAGCAAATTTGAAATGGCTTAATGACGGCGTTTCTTTAGT # Right flank : TTGAGGATGAGTCCTCAACAAGAAAAATTATAGAGCTATCAACATGATTTCCTAAAGGTTGTTTATGGAAAATCACTCTAAATGTCTCTAAAATGAAGATGACATGGATAGAAAGGGAGAACAATTATGAACGCAATTTTTGAAAGAAGAGCTGTTAGAGAGTATAGGGATCAAAAAGTTGATGATGAGAAAATCAAGAAACTAATTGAATCTTTTCAAGCAGCTCCGTGTGCACTCCATCAAACGGATGTGATGGAATTAAGTGTAATTACGGTTCCTGAATTGTTGAAAAAGTTAGAAGAAAAGACTAAGAATTCGTGTTATAACGCACCTTTGGTATTTATGATTAATACTAAAAAAGATAGTCAATTTGGTGAGAGGGATGCTTTTGTTGCTGCTGAAAATGTGATGGTTGAAGCATTTGACTTAGGCTTAGCTTCAGTTTACGTAATGGGTGGTGTAATCGCTCTTAATAAATTTCCAGATTTACAAAAAGAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //