Array 1 23601-22673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARU010000080.1 Cedecea sp. P7760 CH6-P-agarici_S8_L001_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23600 28 100.0 32 ............................ GATCGGCAGCCGTGTACTTAACCGGCTCTACG 23540 28 100.0 32 ............................ ATCTAGCCCCCGTGCAAGTCAGGTCCGTACAT 23480 28 100.0 32 ............................ CATTCGATGATCTCGTTAAGCTGGGCGTGATC 23420 28 100.0 32 ............................ ATGATAGAAGCGAAGGCCGTCGCCACGTAAAG 23360 28 100.0 32 ............................ GGGCATCAATTCGGCATTGAAGGGCTGGAGGG 23300 28 100.0 32 ............................ GATGAATTCTTGAGTATCCGCACGCAGGTTAT 23240 28 100.0 32 ............................ GTGAGCAAAACATGTCGAAGTTGGAGGAGATT 23180 28 100.0 32 ............................ AGCATCAGCGTAAGCCACCAGGCTTGTTCCCT 23120 28 100.0 32 ............................ ACTGAGAACCTGTCCCATGGCTTCGGCTGGAA 23060 28 100.0 32 ............................ GCAAATTCATGTCGTTATACAAGCGGGAAGGG 23000 28 100.0 32 ............................ ACTTCCCGGCGAGCGGCCCACCAGCAAAGCTC 22940 28 100.0 32 ............................ AGCATCAGCGTAAGCCACCAGGCTTGTTCCCT 22880 28 100.0 32 ............................ ACTGAGAACCTGTCCCATGGCTTCGGCTGGAA 22820 28 100.0 32 ............................ GCAAATTCATGTCGTTATACAAGCGGGAAGGG 22760 28 100.0 32 ............................ GTTCTCCAGATAATTACGGATACGGTCGATAA 22700 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAATACGGGAAAGACTTCGGCGACGTCCTACCGA # Right flank : TAATACATTCATGAAAGCTATGCATTCTAACTCATCCATTCCTGTACTGATGGTTTTTATTATTTCTTTTCCGTGCATGATAGTAAAATGAAAGCTGTTCTCTCAGATTAATGAGTGTTTTGCATTACTTATCTTGAATTAGTTCTCAGTGTTTAAGTAAAAAAGCGTTATGATGTCTCCCTGAGTGCGTTGTATTCAATTACATGGATGTAATCTTTATGTTAATGCCTTCTGATTTAAAAACTATTCTTCATTCTAAACGAGCGAATATATATTATCTTCAATATTGCCGGGTGCTGGTTAATGGCGGAAGAGTGGAATATGTGACCGATGAAGGCAAGTCGTCACTTTACTGGAATATCCCCATCGCCAATACTACGGTTGTCATGTTAGGAACGGGAACCTCCGTCACTCAGGCAGCAATGAGAGAGTTTGCAAGGGCTGGCGTGCTGGTCGGGTTTTGTGGCAGTGACGGGACGCCCCTTTATTCAGGTAATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4043-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACARU010000091.1 Cedecea sp. P7760 CH6-P-agarici_S8_L001_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4042 28 100.0 33 ............................ AGAAAGGATACCCGCAGACATGGCGGCAAGTAT 3981 28 100.0 32 ............................ TGAAATTGTCCATTGAGGGATGGGAACTCTCT 3921 28 100.0 32 ............................ CGAGAGTTTGCGCCAGCCCTTTATTTTTCTGA 3861 28 100.0 32 ............................ TTAACGCTAAAGGTTTCCGACATGATGACTTC 3801 28 100.0 32 ............................ GTTGGTGAAATGTTCGCGCCATTAAAGCCGGT 3741 28 100.0 33 ............................ CAGGCGAACGCTGCGGAGTTCATGATCGCCGCT 3680 28 100.0 32 ............................ AATATTCAGATAGAGATCGCGGGGCGTTATCA 3620 28 100.0 33 ............................ CTCCGGGGGCACCCTTTTAAGGAGACCAAGCCA 3559 28 100.0 32 ............................ TCCTCGTTCTCCGGCGCGTCGGGTATCCATTC 3499 28 100.0 32 ............................ AGCGAACGCAGTAACCAGCCATAACGGTAGTC 3439 28 100.0 32 ............................ GCGCTCTGCATCCTGGACTATTACCGCAACTA 3379 28 100.0 32 ............................ TTTCGCCAGACGCTCAACCTCTTCGGAAATTC 3319 28 100.0 32 ............................ AAGATAAGTTAATGGAGAGCAGACAAACCCAA 3259 28 100.0 32 ............................ CGGAGGTGCTCAGCACATCACAGGCAGAACAA 3199 28 100.0 32 ............................ TATTGAGATCCCCGACGGCGCACTATATGGAT 3139 28 100.0 32 ............................ AACGTATCGTGCCTCGCGATCGACCATCCAGT 3079 28 100.0 32 ............................ ATCTTGGGCCCATATTTTGATAGCGGGTTAGA 3019 28 100.0 32 ............................ CGGATGGCAGGTTGAGAATCAGGCGGCCGCCG 2959 28 96.4 32 ..............T............. CGTGAGAGTGGTGGAACGCCGCCAGCAGGAAA 2899 28 100.0 32 ............................ TGCTGCCGTGGCTTGCCTGGGAGTATGCCGTC 2839 28 100.0 32 ............................ TGCGCCGTAATACCATCCCCGAACACCAAATT 2779 28 100.0 32 ............................ CTCATTTCCCAGTTAGGGAAGTCAGCCCAAAT 2719 28 96.4 32 ...........T................ AGGATGTTCATCGCGTCGTCTGCGCTTTGCCC 2659 28 96.4 32 ...........T................ TTCATTTGTTTTTCGAGCGCGTTAACGACGGT 2599 28 96.4 32 ...........T................ ACAAAGCCCAGCGATAGCTACCCATAGCATTT 2539 28 96.4 32 ...........T................ GTCAGGTCCACGACCTTCTGACGCTCGCCATC 2479 28 96.4 32 ...........T................ TCCTTACAAAATCATGTCAATACGACCGGCCA 2419 28 96.4 32 ...........T................ TGTTCCCCGGTGACTCACTCAATTTGCAGACA 2359 28 96.4 32 ...........T................ AAGAGAATCAACGGCGGCTTTAACGGGCTGCA 2299 28 96.4 32 ...........T................ TGTGTACTGCCAAAACCAAAGCAGAGGTGATG 2239 28 96.4 32 ...........T................ AGCAGCGGCTCATATTTGCTGGTTCGAGTAAG 2179 28 100.0 32 ............................ ATGTCAACAATACCCATGTCGTTGATGGTAAA 2119 28 100.0 32 ............................ TAACATGAAGCCTAAAAAGCTGGTTCGTAACA 2059 28 100.0 32 ............................ AGCAGGACGCAGCTCGAGCCACTGCGAGTTAG 1999 28 100.0 32 ............................ TTCAGATGATGATTATTCCCGCCGTTGCCGCC 1939 28 96.4 32 C........................... TTCTGTCTTCCATTAATCAGGAAAAGATAATG 1879 28 100.0 32 ............................ GTTAACTATGTTGCCGTGAAAGACACCTATCA 1819 28 100.0 32 ............................ TTATTGAATGGAGCGGGTTCCCACCAATTGAA 1759 28 100.0 32 ............................ TCGTCTTCAGGATGGTGAAAATAACCATGTTA 1699 28 100.0 32 ............................ CAGAAAGCTCTCGACAATCTCATCTTCAACGT 1639 28 100.0 32 ............................ ACATCCCGACCGGCACAGAGGTGTCATTCACC 1579 28 100.0 32 ............................ ATGAAGATAAGACCACCATCAGCGATAGCGTG 1519 28 100.0 33 ............................ CTGCGCCTGGAGCGCCAGTTCAATGTTTTTTTA 1458 28 100.0 32 ............................ GCATCGTAAAAGTATATCGCCCAGAATCTGAG 1398 28 100.0 32 ............................ TGGCGGTGAGGGTGGCGCTCCAGCAGCCCCTC 1338 28 100.0 32 ............................ TAACTCGTTAAAAGCGCGTTTTCATGTCGAGT 1278 28 100.0 32 ............................ ACAGACACAGCGCCATGAATTGAACCACTTTA 1218 28 100.0 32 ............................ TTTCCCAAACGCCTGATAATTCCATTGACCTG 1158 28 100.0 32 ............................ ACGGAACGCAGTCCACCATTCGCCTTCCGTCT 1098 28 100.0 32 ............................ AATATACCGTTGGTAATCCGGTTAAACCACTT 1038 28 100.0 32 ............................ AGGTATCTGCGTACTGAATCGATAGCCTGGCG 978 28 100.0 32 ............................ ATAGCCAGAAGTTCCACGGACTGAATACTGTA 918 28 96.4 32 ...........T................ TAAAAGACTACGTGAGCATTATTGAGCATCCG 858 28 92.9 32 ........T..T................ ACGTACCCGGATCTGCTGGACGCCATCAAAAA 798 28 96.4 32 ...........T................ ATGCGGTGGCCGCTGCCTCTGCTGGGGCATAT 738 28 96.4 32 ...........T................ ATCAGCAAAGTGAAAACCAAATGAGCGAACAG 678 28 96.4 33 ...........T................ CGGCAAGCCCGCGTCAAAGTCGCTTTTAATCGT 617 28 96.4 32 ...........T................ TTCCTGAAGGTAAAACAGCGCCGCGAATCGAC 557 28 96.4 32 ...........T................ TTGACGCTCAATTTTTCGGAGTGGCACAACGC 497 28 96.4 32 ...........T................ AGATTCTGACAGGTCAAAACCGCTAATTACGC 437 28 96.4 32 ...........T................ AGGAAATGAAGCATAGCTGCAATAAAACCATC 377 28 96.4 32 ...........T................ AGATTGCGGCAACACCGCAAACTAGATTGCGG 317 28 96.4 32 ...........T................ GAAAATAGCCCCAGCCCTTTAAGCTTACGCAT 257 28 96.4 32 ...........T................ ATTCAAAAACCATCTGATAGTCAGGGTTCATG 197 28 96.4 32 ...........T................ ATTTCATCCGTCATTTCCCGAGGCACCATCAC 137 28 96.4 32 ...........T................ TGCTAATGGTCAAACGGTATCAGGTGGTCAGT 77 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 67 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTCGAAAAAGACGGGCGCGAGCTAAAAATTCGTGTCGAAGGGCAATTAACATTCAATAGCCTTCGCCAGCGCATTGATGCCGCGTTGCTCGGCCTGGGGCTGGCTTTTGTCCCGAGCGATACGGTGACCGACAAGATTGCCGAAGGGCGGCTGGTGCGGGTGCTTGAGGCCTGGTGCAAACCGTTTCCCGGCTATTACCTTTATTACCCCAGCCGCAAGCAGCACACAACAGCCTTCTCTCTGCTGGTGGATGCGCTGAGATATTCGTCCTCACCCACAGATGATTAATCGATTATCGATGAGTTTTTCCGGACGATTTGCGAGTCGCTGCTGAAAATTCGCCGATGACAAAGTCTGAAGGTTCCCGGCCCCTTTTTTTAGCCCTGCTCGTAACTTATTGATTTTTCTATTCTGCGCCGTTGTGCCTAAAAAAAGGGTGTGAAGTGGGAAAGAGATGATTTTACGTATTGCAACAGAGGGTTAGCTGTGAAAAGCTCTT # Right flank : ATGGTCAATGAGCGATTCCGGCAGATTCACCGCGTTCACTGCCGTACAGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //