Array 1 28716-30530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNOP010000016.1 Acidaminococcus sp. NSJ-142 nsj-2-A-ZM-C-D5-41_ctg0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 28716 35 100.0 43 ................................... TCTTCTATATAGTGTGCCAATTAATTTTTAACCAGATACTTAA 28794 35 100.0 43 ................................... TTTTTTCATGATTATCTCTCCCTTGATTTTTTTTTTATTTTTA 28872 35 100.0 36 ................................... CTAAGTAGCGTAAAAAGCAACCGTGAACTAGTCAAA 28943 35 100.0 46 ................................... AATTTGCCCATATCTGGTATACATTACTTGATAACTACCCTTCAGA 29024 35 100.0 38 ................................... TGTCTATAAAATGACTGACGGTGCCGAAGTGCTAGAGA 29097 35 100.0 38 ................................... ACCAAAACAGCTTATGCTACAATAAAGACAAGCAAGAA 29170 35 100.0 37 ................................... GTTGACACCCCGCATCAATCATATATTCGCGTATAAA 29242 35 100.0 44 ................................... TCTTTCTGTTCTCTCATTCCATCTCCCCTCTCCGGGAGTGCATT 29321 35 100.0 41 ................................... GTCGGGAGTGCATTTTATTCTGTTGTCAAGGTTCTTTTGAT 29397 35 100.0 40 ................................... GAGGTCCTTAACGTCACTCAATGTAAGCCTTGCAATCCTT 29472 35 100.0 43 ................................... ATATTCAAGCCTTTAATTTTCTTCATTTTTAACACTCCTTTTT 29550 35 100.0 40 ................................... ACAAAAAAAATGTTGACAATCAAAATGAGGAGCGATGAAA 29625 35 100.0 40 ................................... TAAGGCTTTTTAACACCCCGTTTGTGGCTTAGGGTTTTCA 29700 35 100.0 38 ................................... ACTAAAATCCTCTCTACTTTTAGCTCTCATCGTGATGT 29773 35 100.0 37 ................................... TAATATCCACAATAGGGGTATAATGATTGTGTTTCCC 29845 35 100.0 36 ................................... TCTGCCTTCGGTTTCAGCTCCGCAATCCGTTTCTGC 29916 35 100.0 38 ................................... TCCTGCTCCATTTTCTTCACAGAGTCCTTGGAGCATTT 29989 35 100.0 40 ................................... CCATCCACCACCTGCGATTATTATCACTGTTTCGTGTATT 30064 35 100.0 37 ................................... TAATATCCACAATAGGGGTATAATGATTGTGTTTCCC 30136 35 100.0 36 ................................... GATATTGCCAACTGTCAATACATTTATCAATTCCTT 30207 35 100.0 42 ................................... TTCATTGTTTTCTTGTACGGTTCCAAAAATGGCCTCGTACTC 30284 35 100.0 34 ................................... ATGGTCTACTAGCTTATCGACATTTATCGTGTTG 30353 35 100.0 36 ................................... CCGCCCTTGAAATGCCTTGAGTGCGGCCATTTATCC 30424 35 100.0 37 ................................... TCTACCACCACATAGGTGGCTTCCTTGAAAGGCTGAG 30496 35 88.6 0 ....................A...........CCA | ========== ====== ====== ====== =================================== ============================================== ================== 25 35 99.5 39 ATTTACTAAATGATTCCCCGTAAGGGGACGGAAAC # Left flank : CCGGTACAGAGTTTTCTGCAGCAAAAAATTGCCCTTGGGCAATTTTTCTGTAGTTGAGCTACATAACGGTCCGCACTAGCCTCAAAAGGGGACAGACCTTTCCCACTCGGGGGGGGAGTCGTATCCATTTCTCACGGCCTTGGCCGTAGAGAAATGGAATATACGACCCCTGCGATAGCCGTCCGTGAGCCGAACCCGCAGGGTGAAGGGGAACGGAGCACGGCGAACCGCTGAAAGTGGCACCGTAGGTGCCAATAGGGGCAATCTCCCCAGCGGGCCTTTCCCTCCCTATCCCCTGCAATAGCTTGCATCCTCTCTTTTATTTCGTTATACTAATACTAGTACTGTATTTCATCACCTCAAAACAGCGCCGGGCCGCATGGGGTCTGGCTTTACAAGTATTTTGACGCTGCCCTGTGCACCCATTTTCCCCAATTTCTCCAACAGCGCCGTTTTTTCCTGTTTTTAGCCAGGCAGAAAGCGGGTCTTGGAGGGGTAGG # Right flank : AATCTAATATCCAAATTAAAACAGCATTCGAATTTAGAACTTCCAAAAACAATCTTTAATAAAAAATCCATCATGGGATGATTTTTGTACAATCCTTATGGTAAAATAAAACTATCAGATAGTTACCACTCGTGGCCCCATGGCCTCGAGGATGATTTTTGTACAATCCTTATGGTAAAATAAAACCATATGTATTAGGCCATTGCCAAAATCGATTTTCCCTAAAACAAGCCTGCAACTGCGGAATGAAATCTCAGCAAGGCAGTAAATGGCAAGGGCTGTTTTATTATTTATTTTTATAGGCAAAGATTCGGTCTAAGCAAAAGAAATTAAATAATCGTAAGATTGGAATATCTCAAGTGGTGAGGAGGAGTTATATGTCACAAGGTGGGTATGACACTCTGGTTAAGGGTGCTCTGCTGCATGATGTGGGGAAATTGGTCTATCGTGCCAATGCCTTGACAGGGACGCATTCCCAGAGAGGGGCGGAATTTTTAAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACTAAATGATTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 41896-43136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNOP010000016.1 Acidaminococcus sp. NSJ-142 nsj-2-A-ZM-C-D5-41_ctg0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 41896 35 100.0 42 ................................... GCCATAGCTTTGTCAGCTTCGTATTGCCGCCATGCCTTATCC 41973 35 100.0 41 ................................... GCGTACATTTCGTGCAGTCCTTCAATTTTCTTCATGATTTA 42049 35 100.0 39 ................................... AATATGAGCATCAAGGGACGAATGGCAAGGCATGAAAAG 42123 35 100.0 42 ................................... TGTTGTTCCAATCCCTTCATCGTTACCGCATTTTCATATTCC 42200 35 100.0 37 ................................... TAGCATAAGATGTAAATCCAACGAGGATCACTCCCCA 42272 35 100.0 38 ................................... TTTTGCTTGTCTTTATTGTATCAAATTATTGCCAACCT 42345 35 100.0 42 ................................... ATTTTAATTCCCCCTTTGTGTGTACTTCTTAATGGATACCCA 42422 35 100.0 42 ................................... ATCAGGTGTTGCCATTGCGGTAACTCTTTGATGCTTTTATTG 42499 35 100.0 41 ................................... GTAAGCATCAGCTTAATCATATGAGTGCCACAGTGTATAAA 42575 35 100.0 38 ................................... CCGTTTCAAGGGCATCTCTTTTGACTGTTTGCATCGTC 42648 35 100.0 39 ................................... CCCTTAACGTCTCTTTAATACCTTCTTCGTCAAATTTTT 42722 35 100.0 43 ................................... TATGCAACGGAAAAAATTACAATGAAGACCTGGATGCCTACCG 42800 35 100.0 43 ................................... CTCGTGGTATTCCGGCGGTTTAAAAGATTGCGCGTTTCTGGAA 42878 35 97.1 38 ..................................C TTTGTTCGTCATCTTGTTCACCCCCTGTGAATGTGATT 42951 34 94.3 43 ......................-...........C CCGTAGCCGCCATCCTTCAGATGGAATACCGCATAGTAGTACA 43028 35 97.1 39 ..................................C TTAAAAGCAACTGCGTATTGGCATACGATGTAATTCTGG 43102 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 17 35 99.3 40 ATTTTCTAAATGATTCCCCGAAAGGGGACGGAAAT # Left flank : GTGCAGTAGAAACATGGAAGCGGAACTGGCAGCATGTCCAGCAACTATTCAACTATGGCAGTGCCGTAAGGAAGGTGATGTATACCACCAATGCGATAGAGAGCGTGAATTCCAGCTTCCGAAAAGTCACCAAGAAGGGCTCGTTCTCCAGCGAGGAATCTGTCTTCAAGGTTCTCTATCTCAGGGTAAAGGAACTCTATGCCAAGTGGGAAGGGCATCATATCCAGAACTGGGCGATGGTCAGAAACCAGTTGGCTATGGATGATAAGCTGCAAGCTCGTATCCTGAAATACGAGAAATTTTAAAGCCAGCAATCACTGGTAACGCATCTTCTTTTATGATACCTAAAAAAACTTACACACTTAACTTGACAAACCCGCATGGGGTCTGGCTTTGCAGGTATTTTACCGCTGCTATGTGCACCCATTTCCTCCAATTTTACCAACAGCGCCGTTTTTCCCTGTTTTCAGCCAGGCAGAAAGCGGCTTCCAGGGGCTAGG # Right flank : TTTTTGCTATATGAGCTTCCTATAGCAAAGACAATTTTTTTAGCTTTTTCCCTTGGAGGCGTCACGATGACCAGTGAGCTAAAGGTTTTACAGCAGCAGTTCCCCCGGGTGCAGGCCTGCTGGGCTGCTATTGTTCTCTACGGGCAGCATTCTGCTACCTACAAATTTGCTTTGGCGCGGTGTCTGCTGGAGCTGGCGCAGCGGGGGCAGAAACGGGTCTCGCTGGAAGAGTTGGCGGTGCCCTATGCCTGGTACTTGTGTATCCACACGGCCAGGGCGCCTCGGCAGTTCACCAGTCGTTCCAGTACGGTGTTTCGCAGCTGTGAGGAGTTCAATGCGGGCAAAATCAACCAGGAGGCGCTGCTGCAGGTGGTGGTGCAGTACGGGTTCAACAATGTTCTTGACGCTTTCCACATTGTAAACGGGGAAGCGGTGCCGGTGCGGTTTTTTGAAAAGCGGTTTGTGGGCAGCAGCAAGGGTATTGTGCTGACGGAGGCTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTAAATGATTCCCCGAAAGGGGACGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 26842-20125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNOP010000017.1 Acidaminococcus sp. NSJ-142 nsj-2-A-ZM-C-D5-41_ctg0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26841 33 100.0 34 ................................. CAGGGCGGCTTTATCAAACTGTCCGGCGCACAAA 26774 33 100.0 34 ................................. TACGATAAATCATAAGCGGGCAAAAATAAAAATG 26707 33 100.0 33 ................................. GTCCAGGGTGCCATGCTGCTTTATCGCATTAAC 26641 33 100.0 34 ................................. TTAATGGCCCTGTCTGGTGCTTCACCCGTTAAAG 26574 33 100.0 35 ................................. CCCGTCTGGGTTGCATTGTTGCCGGTAAAAAGGCT 26506 33 100.0 34 ................................. CTCTATATCGACAAAATTTAACACCCCACGGGGA 26439 33 100.0 33 ................................. CTGACAAACCCCATTCGAAACGATTAAATATTT 26373 33 100.0 33 ................................. ACCTCCCTTTAAGATTTCGGCCATAGCTTGGGA 26307 33 100.0 34 ................................. CCGCCGGAAATCGCGGTAACGCCTGCGCTGCTCC 26240 33 100.0 33 ................................. TCCGTAACGGCATTTTCAAAATATACCGTCTTG 26174 33 100.0 34 ................................. CTGAAGAGCTGTTGAATACCGGAGCAGCGAAATC 26107 33 100.0 34 ................................. ACAGTCTGGTTGTTGTATGGATTAGTGACTTCGA 26040 33 100.0 33 ................................. CAGTCGTAAATTTTCATCATTTGTCATGATTAT 25974 33 100.0 36 ................................. TTAGAACCCTTAATGGTACCATTAGCTTCCATAGCC 25905 33 100.0 34 ................................. CCAATTGATTCAATATCATCCTCAACAAAAAGAA 25838 33 100.0 34 ................................. CAGAGTAGGCCCATCTGGTAACATCATGAGATAC 25771 33 100.0 33 ................................. TACGGTTCCAACAGCGATAATGCTTGCGTAGTG 25705 33 100.0 36 ................................. TCCGTTGGCTCTCTGGGCAAAATGTACGAACGCTTG 25636 33 100.0 34 ................................. AAACTGGATTCGATAATATGTATGATGGAATTAT 25569 33 100.0 34 ................................. AGGCAGCGGCCACCGGCCAGAACGGAGCCGTATC 25502 33 100.0 33 ................................. TAGTGGTAATGCTATTGCTGATGCGGCCATGCA 25436 33 100.0 34 ................................. CGTAATGGGCAATGCCATCATTTCGTCCTCTGGC 25369 33 100.0 33 ................................. CCTCCTTAGCCTTCAGCCCCTGGATGAGGTTGA 25303 33 100.0 34 ................................. ATAAGCTTTTAGACAGTGGGGAACTGCCCCCTGG 25236 33 100.0 34 ................................. ATAAGCTTTTAGACAGTGGGGAAGTCAGTCATCC 25169 33 100.0 33 ................................. TACTCTGGGAGCCGGTTTTTCTCTTTTGGCTAC 25103 33 100.0 34 ................................. TCGGGGAGAACATCGGACTCAACTGGGGCGTATA 25036 33 100.0 34 ................................. CCGGCAAGAAAGAAGAACCTTTTGCGGAAGCGGA 24969 33 100.0 34 ................................. TCTGTCACAGCATTGATATAAGCCTGTTTACCAT 24902 33 100.0 34 ................................. AACTACCGTAACCCCGTTAACCTACACCGTGCGA 24835 33 100.0 34 ................................. CGTAATGTGAATATCAGAACAGCTCCTACACAGG 24768 33 100.0 34 ................................. ACAAGCTCAGGTATGGTATAAGACGGACCATGAC 24701 33 100.0 34 ................................. CGTGGCCAGGGTGGAGAACCATGACGAAGCTGGT 24634 33 100.0 33 ................................. TCCAGGTCCCGCAGTTCCTTTTGCATGGCGGCG 24568 33 100.0 34 ................................. TTTATCAAAATCGCGGTTAGATTTTTCCAGCGCT 24501 33 100.0 34 ................................. AATATGGGGGATATACAGCCAAAAATGTTGTCGA 24434 33 100.0 33 ................................. TTGCATATCCGTTTTGCATTCCTCCTTTTATAT 24368 33 100.0 34 ................................. CAGTGCCTTCCGCCCAATTTCCGCCAGTTCATAG 24301 33 100.0 34 ................................. AACCAGCTGTTTCAACCCTTTCGTCGTTACCGGC 24234 33 100.0 33 ................................. TTGAAGACTTTCGTTACTCTCTTAGGCGTTATC 24168 33 100.0 35 ................................. AAAATGCTCACAATCCCGGTTGTACGGGGCAATGG 24100 33 100.0 33 ................................. TTACGTAGCTCGTCCAACATCCTAAAATACCAG 24034 33 100.0 34 ................................. ATCGGTGGGCGGCTGATGGCGGTAAACGTCAGTG 23967 33 100.0 33 ................................. TAAACGTTTCCTTTGAATTTCTAACCCCAGGGC 23901 33 100.0 34 ................................. TGCGGGGTTTATCTACTCCCTGGGGTTTGAGGTC 23834 33 100.0 34 ................................. AGACTGGGCGATGCAAGGATGCCCGAAATATGAT 23767 33 100.0 35 ................................. CCCAAAGATGTCGTAGTAGGCAATCCGGACATTGT 23699 33 100.0 34 ................................. ATCTTCATCTTCGATAAATTCCAGTTCAATATCT 23632 33 100.0 35 ................................. GTAAACCCGGCATCGCTGGAGGCTTCGATGGCCAC 23564 33 100.0 34 ................................. TTCCACCACCCGGGTGAACTCCTTCTGGGCTTCC 23497 33 100.0 36 ................................. AATGAAGCAAGATTGATGGGTGTCCCCGCAGAAAAC 23428 33 100.0 34 ................................. TCCAATACATTGCTCTTTGGTGGAAGCTATGATA 23361 33 100.0 34 ................................. GGAGAATTGGGTGCGTGTGTTGTCCATTTGCTAC 23294 33 100.0 34 ................................. GCCCTTCCTCGATGGCGAAAATAGCCAGGTCGAT 23227 33 100.0 34 ................................. CGCAAGAAATTAAACATTTAACCTGGAACAGCAA 23160 33 100.0 33 ................................. CACGGCGGAACCTGCTGCCGTGCCGGGCAGCGC 23094 33 100.0 35 ................................. CACTACACAGAAGTGAGAATTTCACAACTCACCAA 23026 33 100.0 34 ................................. GGGAGGAAGCTATCCGGATCGCACGAGGATCTAT 22959 33 100.0 33 ................................. CACTTACAATACTCGGCAGATGTCAAGATTCAT 22893 33 100.0 34 ................................. AAAGAAAGAGGAGGTAAAGGCAGGTTTGTTATTA 22826 33 100.0 33 ................................. ATCTACAGCCTCCATACGTAAAGATTTCAGTTG 22760 33 100.0 34 ................................. ACCATATGTAACCAAAAGAAATACAGTAAAACTT 22693 33 100.0 34 ................................. TGCCTTGTTTCAACCAGTTTTAGCCTAAATTAGC 22626 33 100.0 33 ................................. TACGACGGGCAGCAGAATTTCGGGAATCAGGAA 22560 33 100.0 34 ................................. CCTGTGACAGTTCCGCTGATGCGATCGTCATCAA 22493 33 100.0 34 ................................. AGTTTGAAAGTGCGCCGGACGTGGTTTTTCATTT 22426 33 100.0 34 ................................. ATCCCGAACGACTTTGAAGGTCATTTTTCCAGGG 22359 33 100.0 34 ................................. TGGGCACAGATACCTTTTCCACCTGCCTTGCAGA 22292 33 100.0 35 ................................. CGCTGAACGGAAGGGATCGGAGGATGGGATGATTC 22224 33 100.0 33 ................................. GACAAGCTGGCCATCAGTAAAACATTCGATACT 22158 33 100.0 33 ................................. CACGGGAGCGGAGCCGGAAGTACAGCTTACGGT 22092 33 100.0 34 ................................. AACTGGCTTGGTAGGATGCTGAACCCTGCTGGAA 22025 33 100.0 33 ................................. CACATTAATAATCTCTCCTGTCTTATTATTTCT 21959 33 100.0 34 ................................. CGGAGCATCGGGAGTGCACTCAACAGCACCCTGG 21892 33 100.0 33 ................................. TCAAGCGGAGCCATGATGAAAATTCCAGCCGGG 21826 33 100.0 33 ................................. AACACGAACTCTTTGAGCGGCTCCCAGAACATC 21760 33 100.0 34 ................................. CCCACAGGTATGACGGATCCGCGAAAAAAAATGG 21693 33 100.0 33 ................................. TCATGGAGAATAGCTACACGCAGCCTTTGTTTT 21627 33 100.0 34 ................................. CGCTTGTCGTCCGCCGTAGGCGGGCGTTTTTGAA 21560 33 100.0 33 ................................. CTCATGGACAGATTGGAAGGATTTAAAAACGCC 21494 33 100.0 34 ................................. AAAAAGCGGGATACAAAATGAGCAATCCGCTTTG 21427 33 100.0 33 ................................. CGCCGACAATCCAGATCGAGGCGGTGAAGAATG 21361 33 100.0 35 ................................. CTGGAACGGCCCGCAGGTCATGGAAGGCCAGAACA 21293 33 100.0 35 ................................. CACCGAACAAAGCGTGACATTCAGACTGGGATCAG 21225 33 100.0 34 ................................. CATAACGAAGAACGTGGATGTGGCTTCGACCCTA 21158 33 100.0 33 ................................. TTCGAAAGGGTCCGGATGCTCCAGGACAAAATA 21092 33 100.0 33 ................................. CAAAATGACAACCAAATGGACGGAAAAAGGCAG 21026 33 100.0 33 ................................. CTACTTGGACCACGCCATGAATATTTCCGTCAT 20960 33 97.0 34 ...A............................. GTCCTGCATTCGCAATAAAAATATTTGCTCCCGT 20893 33 100.0 34 ................................. CTACGGCAACAGCACCACCAGCTGGAACGGTGAC 20826 33 100.0 35 ................................. AGGAAGTCCATTGACATAGTGGGTCACCCAGTAGT 20758 33 100.0 34 ................................. TGCCTGGGCAGGACGTATGCCTCCCAGGTGGTAG 20691 33 100.0 34 ................................. TGGACCCGCTGAACGTTAAGGTGGCAATAGGCAG 20624 33 100.0 34 ................................. AATCAGTTCCACCCGGTCCGCAATCACTTCAGTA 20557 33 100.0 33 ................................. TGGTGGAAACGGCAACATTGGTAACAATCTGCC 20491 33 100.0 33 ................................. GAGGTAAGCTGGAGCCATATGCCTGAGAGCGAG 20425 33 100.0 34 ................................. CGGGGTACCTACCACGGCGCAATTTAAGGACCCT 20358 33 97.0 34 ..........A...................... CTGTAGCACTTTTCCTGCTGCATGCTTCCTGCTG 20291 33 97.0 34 ..........A...................... CTCCCCGTGGTCAGAAAAGTAGACCAGACCCTGA 20224 33 97.0 34 ...........T..................... ATGTAATAGACAAAGTCTTGAATCAGCAGGAGGG 20157 33 87.9 0 ...........T..A.............AC... | ========== ====== ====== ====== ================================= ==================================== ================== 101 33 99.8 34 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : AGGCAATATGGCTGTGCAGAAATTGTATGTATTCAAGCATGATTCTGTGATGGGTAATGTACAAGCCTATAAACTGTTTAACTGTGTGCAGGTAGAAAAGAAGGATGCCCAGAAAGTTGCACGCGCGTTTGAAGATTATGCTGTAATAGTAGATACCGCAGCTTGGCCGGCAGGGGTACACTGTACGGAAATGGTTGAGCAAGAAAAAGTAAAAGCATAAATCGACACATCACCATACGTGATAAAATGGCATATAATAAAAATAGATATCTCTTATTGTCAGGAATTCGGCACTTTGCATTTTGCAGGCGACAATGGGCACTTATCCATATTGGAATTAAGGCTGGATATAATCCAGTTGGAAAATTAATCCGGTTATGCGAACCAAAAGCTCCCATAAGTTTTAATAATGATTTTGCGTGCTCCAAAGGACTTGCTTTATGAGATTCGCAAAATTGTAGGTTGAATCCCGCAGGGATTCAGTGTTTTTTTGTTTGACA # Right flank : GGGCCCAGGAATTCGGACCAGGCCTGAAAATTTTAAATGTATATGCTATAGTATAGGTAACAAGAACGGAGGCCGCTGCCATGGAAAGCCATAACTATTCTGCTGAATTTAAGGCCAAAATCGTCTTATCAATCCTTCAGGGTGACAAGGATTTTGCTGTTATTTGTTCCGAAAATCATCTGGATTCCGAGCTGGTTCGGAAATGGAAGCAGGCTTTTCTGCAAAATGCGCATCGTGCTTTTGAGGCAGATTCTGGGCGTAAGGACGTTCAAAGAAAGAAGAAGGAGCTGAAGCAAAAGAGTGACCAGCTGACGCTTGAGCGGGACTTCCTTCAGGACTGTTTTCGCAAGGCGGGAGAAGTCGTTCCCAAAATTCCCCAAAAGGATGCCAAGGACTGACGGTCTGGCTATCTGGCGGCCAAGCGAACTGTCTAGGGTAAAGTGTGCTGGCCTTCCTGTAGCGGCTGGCATGCGGGGGTCCATTGTACCTTGTACGAATTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6912-13369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNOP010000043.1 Acidaminococcus sp. NSJ-142 nsj-2-A-ZM-C-D5-41_ctg0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 6912 33 100.0 34 ................................. ACGTAACCCTTCACCGATTCTTTGGATAAAAGAG 6979 33 100.0 34 ................................. TACCGTAAGGGGGTGCAAAATGGTAGAATTTTGG 7046 33 100.0 34 ................................. TGCCCGTTGCTGCTGCACCGGGTCGTCAATCTGA 7113 33 100.0 34 ................................. CCGGTCTACCCTCCGCATATATCCCTCAAAAAGG 7180 33 100.0 33 ................................. CGCCCGATTTCTGCCAGCTCGTAGTTGTCTTTA 7246 33 100.0 35 ................................. ATGATTTCCCGCGCCCGGTATTCGCTGCAATCCAA 7314 33 100.0 34 ................................. GGCGCTGGCACCCCAGGCCATAATACGCTGGATT 7381 33 100.0 33 ................................. ATAATAAATGCCAGCACGTAGTACGGTGGCATA 7447 33 100.0 33 ................................. ACACGGGTATTTACTTTGACGGGAATATCCGGG 7513 33 100.0 34 ................................. TATGGGTGACGTGTCTGTATCCTATAATCAGAAT 7580 33 100.0 34 ................................. ATTTTCTTCCTGTTTTAGCTGTTCCAGTTCTCCC 7647 33 100.0 34 ................................. GATAAAATGACGGACAGATTCAAAGAACCGTCAC 7714 33 100.0 34 ................................. CATGTTTCTTTATCGTTTGGCATAGCTTTCAATT 7781 33 100.0 37 ................................. GACTTCGCCCCGCAAGGCTTCAAGGCCAGCTGTCCAA 7851 33 100.0 33 ................................. AGAGTCACAGCACCCTGCACGAAGCCTTTGTCA 7917 33 100.0 35 ................................. AATTCCAGAGTCATTTTCTGCCCCCCCCTATCTCA 7985 33 100.0 33 ................................. CATCAGTAAATTCGCTCATGTTTTCTCCTTTAT 8051 33 100.0 34 ................................. CCCCAACGGCACCTGGGGTTTCCGCGCCGTCGTC 8118 33 100.0 34 ................................. CGTTGCCCATCCAGGATGTTAGCATCATCCCACA 8185 33 100.0 33 ................................. CATTCCTTGCCGCGGCCCTCGTTTTCTGATTGC 8251 33 100.0 34 ................................. CTTGTGTCCCGCACCAAAAAATAGCGGGTGTCCA 8318 33 100.0 35 ................................. ATCGTCTCCCACTATCCTGTTGAAAAATCCAATAA 8386 33 100.0 33 ................................. TGCATATGCAGGGGCACCTGCAATGACAATCCC 8452 33 100.0 34 ................................. TTCTTGCTCTTCATTGTCTTCTGGATCCATGGCA 8519 33 100.0 33 ................................. CCCTCTTTTGGCACCAGGCGGAACAACGGAACC 8585 33 100.0 32 ................................. CATGGGAGTGTCTGATATACGTTTCCGGTTAA 8650 33 100.0 34 ................................. TGTATCAGGGTGGTAGAAGCCGGGGAAAATTCAG 8717 33 100.0 32 ................................. TCTGGTGGTCAGCGCTTTAATTTCCCATTCCA 8782 33 100.0 34 ................................. TGTAGCGCTGATTTCGCTGTTTGACCGGGTCCCC 8849 33 100.0 33 ................................. ATCACTACGTGGTTCGGATGCAGCTTAGCCACA 8915 33 100.0 34 ................................. ATCAACTACAAGACGGTAGTGGTGGCAGATGACA 8982 33 100.0 35 ................................. ATGTGGCCTAACCGATACGAGGTTTTTACATAATT 9050 33 100.0 35 ................................. CTCCTGTTAAATTTGTATTTAATATTTTAGCATCA 9118 33 100.0 33 ................................. CCATTTTTATTTTTTCCCTTGTACATTCTCCAG 9184 33 100.0 34 ................................. CATTGTTGTGGGACCCCAGTACTTAGCGACCGGG 9251 33 100.0 34 ................................. ATCCAAAAGCCAGGATGTCTATGTGTGTCCATGG 9318 33 100.0 34 ................................. TAAAAGAGTCGCAAAGACTTGCTAAATAGCCACA 9385 33 100.0 34 ................................. AAGTTGTCCATGATTAACCCAATAAAGGCCATAC 9452 33 100.0 35 ................................. ACCAATTTTAATAAAAAAAAAATAAAAAAAAAAAG 9520 33 100.0 32 ................................. TGCCGCCGGTTTCCAGGCCGCGAATACAGCCG 9585 33 100.0 34 ................................. TTATGGGTAATAATGATAAACCTGCTAAGGATGC 9652 33 100.0 33 ................................. CAGGAGCTTATGAAAACCGGGACGACAGATAAA 9718 33 100.0 33 ................................. TTCCAAACTGGTGGCGATCGCGGGCGATGTGGG 9784 33 100.0 35 ................................. CGGCGAAATCCGGGCCGATTTACGGAAACCGTGGG 9852 33 100.0 34 ................................. TGCGCGGCGATCGCGAAAAAATGAACCAGCTGGG 9919 33 100.0 35 ................................. CACCTTGCCCAGGCTATTGACCGTATCTTTGATTG 9987 33 100.0 34 ................................. TTGTCAAAGTAAGTCCCGTGTGGTGCATATTCAG 10054 33 100.0 34 ................................. ACCGAAATGTCTATCAACAAAAATATTTTTCGCT 10121 33 100.0 34 ................................. ACCTTGCTTGTACATTATTTTTCCACCCCCTGTT 10188 33 100.0 34 ................................. GTTCCTGTTGCGGTGGATCCACCCCTTATGCAAA 10255 33 100.0 34 ................................. CAGTCAACCCACGCATTTTCAGCAAGATCAGCCG 10322 33 100.0 33 ................................. CACAATTGCTTTCATTCCATAAAATTCTCTAAT 10388 33 100.0 35 ................................. CGCAAACGTCTTGCAACGCTTGTAGTCTCCATACG 10456 33 100.0 32 ................................. TTGACATCTGCGCTGAATAATGAAACGTCCAG 10521 33 100.0 35 ................................. AAAAAGACGGCAGAAATTGCCGGAAACAACCTAAG 10589 33 100.0 32 ................................. CATCAGAATACCGATACAAGCCACGGTCAACC 10654 33 100.0 34 ................................. ATAATTACTGGGTATCCCCGTGGCTCTTTAATGA 10721 33 100.0 33 ................................. CACCGCTGACCCGACCGCTACCAACTCTGGCGT 10787 33 100.0 34 ................................. ATGGGAATCATGGATGAATTTACCCATAAGAGCA 10854 33 100.0 34 ................................. ACCAGCAATTGCATAAAATGTTACATTATTTGTA 10921 33 100.0 34 ................................. ATAGACGACATAGAATAAGTTTATCGTCTGCAAT 10988 33 100.0 34 ................................. CGGCCTTAACCGTCGTTGCCGTCAAGTTGGCAAT 11055 33 100.0 34 ................................. TATAGCGGTTGTACGCATAGAGGTTCTGTACGGG 11122 33 100.0 35 ................................. CTCAAAGGAATACATTTCACAAGACTGGGCCAAAA 11190 33 100.0 34 ................................. TCAACGGTAAATTTTCCCTTTTGTATGTATTTCG 11257 33 100.0 35 ................................. ATCGTTTTGCCGGTTGTAAAAAACTTCGTAATAGG 11325 33 100.0 33 ................................. ATGAAATTGTTTTCTGGAACGATAATATCAAGT 11391 33 100.0 33 ................................. CTGAATATGATAAAAAGGATGTTAGGAAACCAG 11457 33 100.0 33 ................................. CACCCTAGAGGGGATTTTATAACCCGTGTCTGT 11523 33 100.0 34 ................................. TTAAATGTAACGTTTTTATCACTCATATTATGAA 11590 33 100.0 34 ................................. ATTACACCCCTCATTTTTATGCAAAACGCCGCAT 11657 33 100.0 35 ................................. TCAATGAGTTAGCCAAAAAGTTAAACTCTACTGAA 11725 33 100.0 34 ................................. CTTACGAGTTCTGGTATGACCATTGAATCTTATA 11792 33 100.0 33 ................................. ATAGCGATGTTACTATTACCACCTCTGAAATAA 11858 33 100.0 34 ................................. TCTTAATAAAGATAGCATTAGCATCAGCTCTATC 11925 33 100.0 34 ................................. TTAATGGCCCTGTCTGGTGCTTCACCCGTTAAAG 11992 33 100.0 33 ................................. ACTTTTGGTAGTCACATGGGTATACATTAGCCA 12058 33 100.0 34 ................................. TAGTTTTCCCATCATATGATAAAAGGTACAATTT 12125 33 100.0 35 ................................. TTTTTGTACTACCCTCATAACCACTCTGTTCATAG 12193 33 100.0 34 ................................. ATTATCATTATTCCCCCTCTCGTTGTTTCCATTA 12260 33 100.0 35 ................................. ACCAATTTTAATAAAAAAAAAATCAAGGGAGAGAA 12328 33 100.0 35 ................................. AGATTCAAGCAACTTGTAATCCCATGTGGATTTCT 12396 33 100.0 33 ................................. CCGTAATACCATAGGGAAGGAAAATCCCCTGCA 12462 33 100.0 32 ................................. CATTGCGCCTTGCGTGGACAGCTGATCAATGA 12527 33 100.0 33 ................................. CAATGGGGAAGTGGTACAGCGGAAAAATGGCCC 12593 33 100.0 35 ................................. AATTTTAATCATCTGTTTCCACCCTTTCCCGCAAA 12661 33 100.0 39 ................................. TTTTGTGCATGGTGGAACAGGAATTGGCCACGGTTCCAA 12733 33 100.0 32 ................................. ACAACACGCCTAGACGGTGGAAGTGGTTCTAG 12798 33 100.0 34 ................................. TTCTCTGGCATGTGCCCGCCCTGGAAAACCTTGA 12865 33 100.0 35 ................................. TTACCGTCCGCGTAATGCTTCCAGTTTTTTACCGT 12933 33 100.0 34 ................................. AATAAGATACGAACGTTTAAGGTAATTTCAATTT 13000 33 100.0 34 ................................. CCTACATGGACACCCCACCTGCCCCAATGAATCT 13067 33 100.0 34 ................................. ACAAAAAGAGATACCGTATTGGCATCTGACGAAC 13134 33 100.0 32 ................................. CAGCCGTAGATGCCCTCATTCCAGCCTATCTT 13199 33 100.0 34 ................................. TACTTCCTTCAGACTTTTCTGCGGACGTTTGATT 13266 33 97.0 35 ..............................G.. AAGCTCGGCCATGATATTATAGGTTTCATAGGCCT 13334 33 81.8 0 A.......T....C..........A.A...C.. | T,CT [13357,13363] ========== ====== ====== ====== ================================= ======================================= ================== 97 33 99.8 34 GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Left flank : CCAAGCTCTATTACTGGCTAAGTATATTCGTCAGGATCTAGATGGATATCCTGCATTCTTGCATTAAGAGATGAGAGGTGAGGTCAGAGTGCGGATTGTAGTAACTTATGATGTGAATACGGAAACTGCCGCTGGCCGAAAACGTCTAAGACAGGTTGCCAAATGCTGCGTAGCACATGGACAGCGTGTTCAAAACTCAGTCTTTGAGTGTTCATTGGATGAAGCACAGTTTGTGGCATTGCGGGGGCAACTTGAAAGCATTATAGATCTAAACAAGGATAGTTTACGGTTTTACAATTTGGGAAAAGTTAAGCCAGGTAAAATTATCCATGTTGGAATTAAGACTGGATATAATCCAGATGGAAACTTAATCCTGTAATGCGAACTACAAGCTCCTATAAATTTTAATAACGATTTTGCGTGCTCCAGAGGACTTGCTTTATGAGGTTCGCAAAATTATATGTTGAATCCCGCATGGATTCAGTGTTTTTTGTTTGACT # Right flank : TAAATAGGTCAAAAAGTGGTTTTATAACAATGTACATGCTATTGAAATCGAGGATACTATTGCATGAGATGGTATTATGCAATATGTATTGGATTACGGAAAAAGCTTTGATGTCAAATCACTTGACGACTTACTCTAACTGAAGATGATCGATGACGTGGTTGACACTAAATCAATTTTTAGCGAACTGGCAAGAGAATTAAAAAAGAATAGACGAATTGTTAAACGTTGGTATGAACAGAGTGAACCCAGTAAAGAAGGAAACCACCCTTCCTAATTTGATAGATATAAGCCCATTGTCAAAGATATGCTCGCAGCAAAGGATACTTCACAGAGATTCTACTATAAACGAGTCTAGTGGCAGTACATTAAGGATGACCATGGGCTAAATGGGGCACAGTCAACTTTCCGGGCCTACATTTCTTCCATTCCTGAATTTAAGGATTACTTTTCTCAAAACAAGCGAACGTTGAGCTAGACAAATACGGTTCGTTATGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //