Array 1 910746-911627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011516.2 Edwardsiella sp. LADL05-105 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 910746 28 100.0 33 ............................ CTCGGCATGATTACCGATAGCGATAAAGCTGCT 910807 28 100.0 34 ............................ TTCCGGGCAGGACGACCACTTCACGGCTGATGTA 910869 28 100.0 33 ............................ TGCTTATGGAGCCGGAAACATGCGCGTACTAAA 910930 28 100.0 33 ............................ TGCAACTACTCAACATCGTAGCGCCGAAAGGAA 910991 28 100.0 33 ............................ TCAGCAGCACACCAATGATCCACTCAATGTGAC 911052 28 100.0 33 ............................ TCTGGCCCACGAAAAAACACCCTGGCGCCGGGG 911113 28 100.0 33 ............................ CGTTTGGTGATGTTAGTTGCGCTGATCGTCTCC 911174 28 100.0 33 ............................ TCGCCGACAGCGCACTCAGCGCCGACGCGGCCT 911235 28 100.0 33 ............................ TCGTTGAGCCAGTCTTTTTCCATGTATGTGCCG 911296 28 100.0 33 ............................ CGACGCTTTAAGCTCTACACCGGTCGCCTGAGC 911357 28 100.0 33 ............................ TGATTGATGGCTGTGTAGCGCGGTTACGTAAAT 911418 28 100.0 33 ............................ CAATCGGCAACGATCCAAAATGGTTGTCATGAG 911479 28 100.0 33 ............................ CGTACAAGGCGCTGTTAGCCGGAACCAAATTGC 911540 28 100.0 33 ............................ TCTCACACCTATCTGTCCGGCAACATCGAGTGC 911601 27 92.9 0 ................-A.......... | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : GAACCTCTGTATCGATCTTGCCTTCTCCCTGACGCGTGAGATGGCGGGTCGTTATGAGAAGGCTCTGGTTTCATCTCGTTTTCGAGAGCGGGTGATAGAACTGAATTTGCTCGCGAGTGTAGCCAGAGATATACCACAGCTACTTGGAGGGGCAAATATTGATGCTGATAGTGCTAGCTAACGATTTACCTCCAGCAGTTCGAGGACGAATGAAACTTTGGTTTATTGAACCGCGGCCAAATACCTTCGTTTCCGGTATCAAGGATTCGGTTGCTGACACAGTGATCGAATACCTTTATCAACACTGCTCACCGGCAGCGGGTGTGGTGATATTTAAAAGCATTGCTAGAACACCGGGATATCAGATCCATACCATAGGATCACCGACTAAGACGCTCTGTGAGATCAATGGCCTGCAGTTGGTGATAGAAAAGCGACTCGAGCAGTAAGTTAACCACAATATGTAGTTGGTTTAGTATGCTCTTTAACAATATAATGGG # Right flank : CCAAAAGTCAGCCAGTGAACCGTCTCGGTTTTGTGGGAGAGCGTTAAGTCCGGGAGTTCAGGCTGCCATAGCCTCGTTCCCGATGGGAGCGTAATACACTTTTTCTGCCTCAGCGGGTGGGATGTGACTCAGCCGCTCAAGCAACCGACGATTGTTGTACCAGTCCACCCACGCCAGTGTGGCCAGCGCCACTTCCTGCCAGTTTCTCCAGCTCTGTCGGTGTTTTGTACAGACCGTTGATACTTTCGGCCATGGCATTATCATAAGAGTCACCCGTACTGCCCGTTGAAGCTAGAAGCTCCGCCTCCTGTAGCCGCTGTGTGTACGCTAGCGATACGTACTATGAGCCTTTGTCGCTGTGATGAAGGGGGGCTGATGGCCGACGGGCCCACAGCGCCAGCTCCAGCGCGTCCAGTACGAACGCTGTCTCTTGGTCAGTGAAGCCTGGATCGCCAGTGGGGGTTCCGCCGGTGTCAGAAGCATCGCCACGATGGTCACTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1843658-1842773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011516.2 Edwardsiella sp. LADL05-105 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1843657 28 100.0 34 ............................ TGGACTATGAAGCGGTAGAACGCTGGGTCTGTGA 1843595 28 100.0 34 ............................ CCCCGTAAGTCCATTAATGATCACAGAGCACCTA 1843533 28 100.0 33 ............................ CGTTTCAAAGTCGAGGGTTTCCACCGTATCGGG 1843472 28 100.0 33 ............................ CCCTGCATCGGTACATGACAAAGACTGAAGCGG 1843411 28 100.0 33 ............................ TGCCTTCAATGGCCGCCGCATTCTCTTGACCAG 1843350 28 100.0 33 ............................ TTCGGCCTTAGCCCTGGCAGCGGGCAACGTAGA 1843289 28 100.0 33 ............................ TGTCTTATCGGTGGCACCGCCAGATGCTTCCCG 1843228 28 100.0 33 ............................ CGATTGTCCCTGATGCCGCCAACTCTTTCCCAT 1843167 28 100.0 33 ............................ TGGCTATGAAAACGTGTTCCCGGTGTATGGCTC 1843106 28 100.0 33 ............................ TGCCGATGTATTCGACGTTGTATTTTTCGGTAA 1843045 28 100.0 33 ............................ TGACTGCGTAGATAGAGCACTGTGCAGCATCGA 1842984 28 100.0 34 ............................ CTACCAGCCAGCCCGGACAGGTCCAGCTTGAGGA 1842922 28 100.0 33 ............................ CTTTATTCTGGGCCGTAGCGCTGCTGGAACGCT 1842861 28 100.0 33 ............................ TAGCCCGGAAGGTTGGGAGAGTACGCTATGAAA 1842800 28 92.9 0 ..C........................A | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.5 33 GTTTTCCCCACGCCTGTGGGGGTGTTTC # Left flank : TTGTCGTGGCGCTTGATGAAGTACTCGGCTACAGCCTGAGAGGTGGTAACAGCTTTGCCATCGTGAATGGTTACACTGGGGGTGTGTACAGAAAGCCGATGAGTCATTTTTCTGTGTCCTACGTATATGTTCAAATTTACCCTGTGTTCAGCAGGGCGGTCGGGTACTTGAACACCGTACGTAGTCGGCCAGCAGTTTTTCCCTTACGGGTGTTGTATGGTCTGCTCGCTACCCGGCCATATCTGAAAGTATGGACACAAAAAAAACCGCATTGCTGTCGGGTGCGGAGGCCGCTACGTAAGGTGTGTTCAGCACCTGAGCGGACTATACTCCCGGCATCGCGGGTAAAACTAATTTCGATTTATGATACTTTACTTACAAATCATAGGAATTCAATGAATCATTCTAGCCTGACCATACAGAGCCCCATCTGGCTATTCGACCAGTAAACCAACCACAATCTGTAGCTGGTTTAGTATGTTCTTTAACAATATAATGGG # Right flank : ATAGGAAACTGACCGAGTCACATATCAAGGCCAATAAAACCAGGCTGCTGGCTATGTGGCAATCAGCGGCGCGATTTTGGCTATCGTGCGGGAAAATAACGCACAGCTCGGTTAAGGGCTTACTGTGCGCCGTCAAGCGCCGCCCTTCAGAGCGGGGGGATACTCACTCTCATCACTAGGATCACCACTGATGAAGGTACTGGCCTCCTGAAACGACCGGAACACAGGTCATTTAGTGATATCCATCTAACTTACTGAAATACAACTAATCGATATCAAATAAAGATCGAGGGAATCCATTATTATTAGGGAGCCCCATAGCGGTTAAATTACACCCAGGCAAACGAGGTTTATCATTATCAATAAGATCGGCAATATTTCTAATCCATTTTGAGCCAGGGCCGATTTTTTTCACCAAAAACCATAGCACAGCTATCATCCCATACATTCTTTCGTAGGCATCATCATTCATACTCAATCGCTCAAAGTATGGGTAATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //