Array 1 209701-210128 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQE01000012.1 Dickeya dianthicola strain CFBP1888 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 209701 32 100.0 34 ................................ GACACTGTGCTGCGCCAGCTGCTGCCCATCAAGT 209767 32 100.0 34 ................................ AACACGTTAAGTAACACTATGACTGAGTATGGTC 209833 32 100.0 34 ................................ TAACAAGGCACTGCGCTAAGTTAACTACTAGGGG 209899 32 100.0 35 ................................ TGCGTACAGCAGCATGGGCGACAGCATCGACAGCA 209966 32 100.0 33 ................................ AAATAAATGTTTGACAAGTTAATCCTTGTGGAT 210031 32 100.0 34 ................................ GACATTATTCTTACGGTTAGAATCCAAATGGTGG 210097 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GCTAAGGAGTACAGGTATGAGAAAGGCAACACGTGTCGCGCCCCACGCGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2072-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQE01000052.1 Dickeya dianthicola strain CFBP1888 contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2071 32 100.0 35 ................................ CCATCTATTGAACCAACAATACCAGCACCTGACTG 2004 32 100.0 34 ................................ TTCAATATATCGGTCACGAAGGACAGACGGGGTT 1938 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATGAAC 1873 32 100.0 33 ................................ TTGTGATGAGCCAGGATGAAATCCAGATTTCAT 1808 32 100.0 34 ................................ GTCGTATCGGTTGTGCTGACCTTGTACATATTCA 1742 32 100.0 36 ................................ ATGGAGATACCACCATCAATGGAACTGGAAAAACGA 1674 32 100.0 34 ................................ CCTGAGGAACTGGGTATGGGTAAATGGGTGGACT 1608 32 100.0 33 ................................ TATGGTTCGTTGTTTGGCTTTATTGATCAGTGT 1543 32 100.0 34 ................................ TATGGAAAGAAACCCTAAATTCAAGGGTATGAGC 1477 32 100.0 35 ................................ ACGACAGAAAGCCTCCTGTTTGTCTTTCAGTGCCA 1410 32 100.0 34 ................................ TGATGCTCCGGCCGAATTCGTAACGCCCAAATTG 1344 32 100.0 34 ................................ ACAGAAGCGAGGTCGACGCCCAGCTGGTTGGCCG 1278 32 100.0 33 ................................ CTGTATGAGCGCCAGCTGTACACCATCCAGCGC 1213 32 100.0 37 ................................ GGGCCGCACTTCCGACTGCCCCGGCTCTGTCACCATC 1144 32 100.0 34 ................................ ATATTCCTGAGGGGTGCGCAGGTCACTCACGATA 1078 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 1011 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 946 32 100.0 34 ................................ CCTTCAGATGATGTGTATGGTTGCCGGAATGCCA 880 32 100.0 34 ................................ TCGTGAGCCAGGCGATTCAGCTCGAACGTGAGGT 814 32 100.0 35 ................................ CTTTGATCCAGACTATCGGCGGCCTGCTGATGTTT 747 32 100.0 34 ................................ TGTCACATGTATTGTCAATTTAATTTACAGCGGG 681 32 100.0 33 ................................ GGTAAAATGCAACTGCTCGTAGCCCACGATCTC 616 32 100.0 35 ................................ CACGACAGCCCCGAAGGGCTGTTGATGTCTAGCTG 549 32 100.0 34 ................................ AGAGTAGTAGCAGACTCAAACGCTTTCTTGCCGT 483 32 100.0 34 ................................ ATTTTTACCGTCACTGGCTGGCCTGGTGATTTAC 417 32 100.0 34 ................................ TATCTCCAGCATCACGCCGCCGATGCTGAACATT 351 32 100.0 34 ................................ TTTGGTGATAGCTTACCAATTTTACCCTCCGCCC 285 32 100.0 35 ................................ ATTAATGACTTCCTTGTTGAAATGGAAGCTATTAA 218 32 100.0 34 ................................ TTCTCACTCAGAATCTCGGTCGCTTTTTGCTTAG 152 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 86 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CCGCCACTGGCTCCCATGCCTTGCGATAGGTTGCCGTCGCGCCCCACGCGGGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 363643-362773 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQE01000009.1 Dickeya dianthicola strain CFBP1888 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 363642 28 100.0 32 ............................ CTATCACCAAGGAGTACTGCCATATTGATTGT 363582 28 100.0 32 ............................ TCTGTTAAGTAAGCCTACCAAGGCACTAACTC 363522 28 100.0 32 ............................ AGCAAGCGAAGAAAGCGAAGAAAGCAAGTCAG 363462 28 100.0 33 ............................ CGGCGGGTCGAGCATTTCCGCTGAAAAAGCTCT 363401 28 100.0 32 ............................ GTACCGACACAGATGCTGAATAAAATCGTTGA 363341 28 100.0 32 ............................ TCATCCGCGTTCAACGCGCAGCGCTTGTCTGT 363281 28 100.0 32 ............................ TGCAATGATTAACTATACAAACAAAAAAGCCG 363221 28 100.0 32 ............................ GTTCGTTCGTTCCTCTCTCTATAGTGACAGTC 363161 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 363101 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 363041 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 362981 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 362921 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 362861 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 362801 27 85.7 0 ....................A..-..CG | GG [362778] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CAGATTTAGTATTCCACTTCATAGCGAACGAAGGC # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 153807-153238 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQE01000029.1 Dickeya dianthicola strain CFBP1888 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153806 28 100.0 32 ............................ TGACAGACACCATTGCCAAAGACGTGAGCAAG 153746 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 153686 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 153626 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 153566 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 153506 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 153446 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 153386 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 153326 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 153266 27 89.3 0 .......................-..CG | GG [153243] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 162522-162969 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQE01000029.1 Dickeya dianthicola strain CFBP1888 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162522 28 100.0 32 ............................ TAGATACTCTCTGAAAGAATAAAGTGTGCCGG 162582 28 100.0 32 ............................ GCGGTGCTGAGGCCAATCCTTAAGGCCGAGTC 162642 28 100.0 32 ............................ AGCAAGCGAAGAAAGCAAGTGGTACCGTCGAG 162702 28 100.0 32 ............................ TATCAAGTTCGATAAGAAGTCCGATGGGTATC 162762 28 100.0 32 ............................ TAGACACCACTCAGGCTCTAAGAGCCAACTAG 162822 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGGGTTGAAATAA 162882 28 100.0 32 ............................ CATGTCAGAGTCAAACTCAGATGTGTCTGTTA 162942 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : TCTCTCACTTCGTTCGTTCGGCCTTCGTTTGAAGTGGTCAACAAAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //