Array 1 16819-19111 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYH01000001.1 Pseudospirillum japonicum strain DSM 7165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16819 28 100.0 32 ............................ TTGCTAAAAAGGGCGTTGAATACAACGAGCAG 16879 28 100.0 32 ............................ TTAGAGCTTGGAAGATCAATCCAATCGCCAAC 16939 28 100.0 32 ............................ AAATTCGGGCAGTATTGACAAAAAAAAGCATA 16999 28 100.0 32 ............................ GGGACCATTAGCCAGTCCATCCAGCAGCGGGT 17059 28 100.0 32 ............................ ACCCTAAAAAACGCTAAAATTTCGTAAAAAAC 17119 28 100.0 32 ............................ GCTCGCATCCGCTCGGCCACGCCTTCCAGCTC 17179 28 100.0 32 ............................ TATCACATCATGCAGCAGCATCCAGGGGAGCC 17239 28 100.0 32 ............................ GGACAATTTCCGAGACACCTTAGACAGAATGG 17299 28 100.0 32 ............................ CATGCAGCAAGCCAAGGGCTGACATTTCAGTC 17359 28 100.0 32 ............................ TTACGTAGACCCCTTTGACAACGTGCAAAAGG 17419 28 100.0 32 ............................ TTCACGATGAAGCTTAAGAGGTTTGCATGATT 17479 28 100.0 32 ............................ CGCACTAGGCGGGTTGTGTTGGTTTATTTTGC 17539 28 100.0 32 ............................ AGTATCTTGATGAGCCTATGTCATCCCGTGTC 17599 28 100.0 32 ............................ GTCACGGAACACTTTGACGTGCGGATCAATGA 17659 28 100.0 32 ............................ ACGCGAGCGATAATCCCCGCGACACGGGATGA 17719 28 100.0 32 ............................ TTCCACTTGGCTGCTTCTTTGCCAGTAAAACC 17779 28 100.0 32 ............................ AGCCTTCACGTTGAAGGCGTCTTACGTGTTGA 17839 28 100.0 32 ............................ GTTAAGCGCTACGCTCTTTGACTGTAGAAACT 17899 28 100.0 32 ............................ TTTGTGTTTTGGAGAGACCCCAGCATATCCCA 17959 28 100.0 32 ............................ AAACCCAGTCCGCAGAGCGCGACGTGGAACGC 18019 28 100.0 32 ............................ TAAGACCCTGGGCCGTGGGTCTGAAAAAAATA 18079 28 96.4 32 T........................... GATGGCTTTAATGGAGCTGAGCTTTTCTTCAG 18139 28 100.0 32 ............................ ATGCTTAATATTCTGCCTCAGGTCGCGCAGAT 18199 28 100.0 32 ............................ CTTGTATTTTTTGGACGTCAGACACCCAATAT 18259 28 96.4 16 ...........T................ CGTACTCAACTATACC Deletion [18303] 18303 28 96.4 32 ...........T................ GCCCCAGCCGCCATTTCTTTGCCTGACTTCTT 18363 28 96.4 32 ...........T................ AAACGTACACCTTTGCGCTGCCAGCAAACGGC 18423 28 96.4 32 ...........T................ TTTAATAGCTTTTTTAAAAAAAGCACGGCGGG 18483 28 96.4 32 ...........T................ GCGAATTAGCGCGTTGGTTGTGCGTGTCAGAA 18543 28 96.4 32 ...........T................ ACACTATCAGCTTGGCTAAGAGTCTGTACCTG 18603 28 96.4 32 ...........T................ AACGGGGGTATCATCTCCGACCAATGCAACAG 18663 28 96.4 32 ...........T................ TAAGCTGACCGGCTCCCCTGCGATAATATCGC 18723 28 96.4 32 ...........T................ AAAAGTGCCAGGGTGTCATAGAGGTCAGTCGC 18783 28 96.4 32 ...........T................ ATTGTAGATGGTGAGCTTATTAAAGCTGAAGA 18843 28 96.4 32 ...........T................ AGACCTGAAAAAAGCCTTTTTGCACGCGCTAA 18903 28 96.4 32 ...........T................ ACTGGCCATGATGCAAAAGCTACCTGAGTATC 18963 28 100.0 32 ............................ AGCGCAAAAAAAAGATGCGCCTTTACATCGAA 19023 28 100.0 32 ............................ TAGTTCAAATGAAAGGCGGTAAAAACCAAGGC 19083 28 89.3 0 ..................C....TT... | T [19104] ========== ====== ====== ====== ============================ ================================ ================== 39 28 98.5 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCTTATGCACCCGAGAAAATTGCTTATCCTATTGATCGTTTCACTATGGAAGTCAAGCGTCAGTTAGATGTTTTAAACCAGCATTTAGAACAACACGCTTATATGGCTGGAGAGGAATATTCTATTGCTGATATGGCCATTTGGCCTTGGTATGGTGCGCTAGTTTTAGGCCGTTTGTATGAAGCGGCAGAATTTTTACAAGTACAAGAATATCCGCATGTATTACGTTGGGCACAAGCATTAGATGTACGGCCTGCCGTACAAAGAGGCCGTATTGTCAATCGCACTTGGGGAGAAAGTTTTGAGCGGTTAAGGGAGCGCCATAGTGCTGATGATTTGCCATAAAAGAATAGTTTTACTACCAAAATACCCCTCTTTTTTTGATTTATAAAAAATTTGTTATTAATCAGTAAGTTAAATAGATTTCCTTTTAACAAGGGTAAAAAGGGATTTTAGAACTAATGTCTTGTTGTTATGTATCTTTTTTGTGATAGATTTCT # Right flank : AGCTTAGTCAGTTTTTATTTTTTATACCAACCCCCTGTTATTAACAGGGGGCAACTTGGTTTAACAAGGCAGTAAAGTATGTGGATGATGCTCTAATAACCAACCTTGCAACTGGTCGCGTAAGGGGCCTTCCAAACGCTGGCTTTTGCCACTGTGTTTATCGACAATCACAAAAGTAATATCTGCATCTACAACTAAGGTTTCGGGTGCATCCTGAAGAACAATGCGTTGCTTCATCACAGCGCTGCGTTCTTTAAGCTCACTCATCCAAGTGTGCACCAATAGGCGTTCATTCATACGTGCGGCATAGCGGTAATTAATATTGATATTGACTACAACCATACCCACTTGGCTTTGACTAATACGTTCTAACTCGCCAACTTCTTCAAGAAAGTTCCAACGTCCTTCCTCAAGAAATTCTAAATAGCGCGCATTATTCACATGGCCGTACAAATCTAAATGATAGCCACGTACACGAATTTCTGTTGTATTTATCATCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29171-36158 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYH01000006.1 Pseudospirillum japonicum strain DSM 7165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29171 28 100.0 32 ............................ ACGCGCCTATCTGACATTATCGACGTAACCGT 29231 28 100.0 32 ............................ CTGCTTGACTACCACCGAAAGCATCGTAAAGC 29291 28 100.0 32 ............................ TGACCGGTGCGGTTGCCTCCTTGAGCGCCACC 29351 28 100.0 32 ............................ TGAGCCAGTAAGTACCTCAAAACCGCACTGGC 29411 28 100.0 32 ............................ AACGCCGTCTACACGATGGGTGATGCGTCAAA 29471 28 100.0 32 ............................ CGATGCGTGCATTTGAGTAAAGCATTTTACCC 29531 28 100.0 32 ............................ AGCACTGCGCGACGAACCGCTTTAGACTCACG 29591 28 100.0 32 ............................ AGACGCTAGCAGCGGGTGAAGATGGCACAGAA 29651 28 100.0 32 ............................ GATTGTTGGTTGTTCTGTCGTTGTTTGTGCAA 29711 28 100.0 32 ............................ GATCATGTTCAAGGCTACGATGCAAGCAGTCT 29771 28 100.0 32 ............................ AGGCTTGTGCGTCCCTTTTTTAGTGATGACTG 29831 28 100.0 32 ............................ GTATAGACGCTTGTAGCGGCGTCCTACGGTTC 29891 28 100.0 32 ............................ CAAATCCCTTGGGCTTTGTCTGCTATCTCTTG 29951 28 100.0 32 ............................ ACCGCGAAATCGAAGCGGCAACCAACCTCTTG 30011 28 100.0 32 ............................ TCAAGCTGTGGGTAGCTTGTTGTCACCCGCCC 30071 28 100.0 32 ............................ AAGGCGAGCGACACGCTCATGGTATCGGGTGA 30131 28 100.0 32 ............................ ATGCGTGTCATCAGCGCGGCACCACGATTATA 30191 28 100.0 32 ............................ ATCATTATATCAGAAAGCTCGCTAAAGCTCGT 30251 28 100.0 32 ............................ AGAGTGGAGGGTAAGAAGCCATCACTGGCTAA 30311 28 100.0 32 ............................ AGCTCGCGCGCGCGCTCTGCAATTTTTTTCTT 30371 28 100.0 32 ............................ AACAGTTTCACCCTACACTAACGCATCCACCA 30431 28 100.0 32 ............................ ATATAATCCGCGTGCAGGCGGTTTTGCTCGAC 30491 28 100.0 32 ............................ AGCTAGATGCTTTTCGTGATACCTACGGTGCA 30551 28 100.0 32 ............................ GTACTCAAGGGCTGATGGCTTGCAGTCGAGCC 30611 28 100.0 32 ............................ ATCATTATATCAGAAAGCTCGCTAAAGCTCGT 30671 28 100.0 32 ............................ AGAGTGGAGGGTAAGAAGCCATCACTGGCTAA 30731 28 100.0 32 ............................ AGCTCGCGCGCGCGCTCTGCAATTTTTTTCTT 30791 28 100.0 32 ............................ AACAGTTTCACCCTACACTAACGCATCCACCA 30851 28 100.0 32 ............................ ATATAATCCGCGTGCAGGCGGTTTTGCTCGAC 30911 28 100.0 32 ............................ GCGACCTTCAGCCGTCCCTTGCTAGCCTAGGC 30971 28 100.0 32 ............................ CCCATGAGTGGCCCGCTGGGGCGCTAGCACAC 31031 28 100.0 32 ............................ GCTAGACGGGGTTTGCGCTTGCTGTGGAGGCG 31091 28 100.0 32 ............................ TGCGATGCAGCTGATGTTGCGCCTAAGTCACT 31151 28 100.0 32 ............................ AAGACAAGGAGGATTTGGCATGTATATCTGGC 31211 28 100.0 32 ............................ CAATCAGGCATATCATCTTCGGTCATGCTTGG 31271 28 100.0 32 ............................ AGATTGAGTTCCGCTGCATTTTGTTGACTTTG 31331 28 100.0 32 ............................ AAAAAGTACAAGGCGCAGAATGGCGTGGCATC 31391 28 100.0 32 ............................ ATAAATATCGCGTAATCAGCAACCCAACCGTA 31451 28 100.0 32 ............................ GCAGATTACTTAAACGTCGTGGATGGCGGCGG 31511 28 100.0 32 ............................ TCCCGTTCACTGCGCTTCTTGAAGTGAAAAAC 31571 28 100.0 32 ............................ GCTAGAGTTTAAATTAAAAAGTGAAGCTATCT 31631 28 100.0 32 ............................ TCTTATCTTGCGTGCTTGCTCAAAAACAATCT 31691 28 100.0 32 ............................ GCACGTGGATCCGAGAGTTATCATCCAGCTAG 31751 28 100.0 32 ............................ TGCATCTGTGATGTCAGTGCCCATCAAAATAT 31811 28 100.0 32 ............................ AATAGTGCCTTCACTAGAACAAATCAAAACGC 31871 28 100.0 32 ............................ CACAAACCCGGGCGGCGACTCTAGATCAATAT 31931 28 100.0 32 ............................ AGCTTGCTTAAAGCGCGGATCGTTTGCCATGC 31991 28 100.0 32 ............................ AAAAGTCACTTGCGAAAGGCCGTAGAGTATCG 32051 28 100.0 32 ............................ TATCGCACTTACTAAAGCCATAGTACTTGTAG 32111 28 100.0 32 ............................ CGCCATCTTTCTTGATCCGCTAGTAAAGTCAA 32171 28 100.0 32 ............................ GTCGTTACGAAACTGCATGATGTCGCCGTGGA 32231 28 100.0 32 ............................ AACAAGGTCAAAACAGCCTGCTCAATCTTGGT 32291 28 100.0 32 ............................ AATCTTGTCGGTAGCGGCCTTGTAAGCATTAA 32351 28 100.0 32 ............................ TAAAGGCGGCGATGCAGGACGAAAGCGGGCGT 32411 28 100.0 32 ............................ AAAGTCATTTCGCTGCATGGCGCTAAAAGTCA 32471 28 100.0 32 ............................ TGCTGCGGCTGGGCGTTTCTAGTGGTTGGGTT 32531 28 100.0 32 ............................ GGACTGAAAGACGATTTTTAGCGGCACTTGAG 32591 28 100.0 32 ............................ AAATCGCGGCATATTGCACGGATGAGATCGGG 32651 28 100.0 32 ............................ TGGCGTGGGCCAGTGCGGCTTCGAAGTGCTTA 32711 28 100.0 32 ............................ TTTACTTGATACCTTACCCAAAGGGTGGCGCT 32771 28 100.0 32 ............................ TGCGGTATATGGTTGGCAGGCATGGCCCCGCC 32831 28 100.0 32 ............................ GATAAATAAGCAAATCCTCCCTGCTGTTTTTC 32891 28 100.0 32 ............................ GTACGGATCATGGTGCATTCTGTGTGACTTGG 32951 28 100.0 32 ............................ AGTTGATCAACTTTAGTTACAAGGCCGGTAGA 33011 28 100.0 32 ............................ CGGTGCAATGATGGGCACCACATCCCGTGGGC 33071 28 100.0 32 ............................ CAGTTCTGGGCAATCCCCGAAGCCGATTGGAT 33131 28 100.0 32 ............................ ACAAGAAGTATCCAGAAGCCACGTGGGTCGTT 33191 28 100.0 32 ............................ TGTGATGATTTCCGCAGCAAGCTCCAGCATGT 33251 28 100.0 32 ............................ AATCAATGCCAAGCTCAGACATTAGTTGAGAC 33311 28 100.0 32 ............................ GCAGACAACAAAAAACCCGCACTAGGCGGGTT 33371 28 100.0 32 ............................ CATTGTCGCGCCGTGGATTGAGTCGCCACCAG 33431 28 100.0 32 ............................ ACGTAGGCAACCGAAAGGTTAGTGCTAGTTGT 33491 28 100.0 32 ............................ AGTACGACGCTTTTAATCACGTCGCTTTACTT 33551 28 100.0 32 ............................ ACACTTGCTGTGGCCGCCGATGCAGGAGTTGT 33611 28 100.0 32 ............................ CCAGATGCGCAGCTACTTGCTATCGCGGATGG 33671 28 100.0 32 ............................ TCCAAGATGCATATCCGCGCCCGTGGCGCACC 33731 28 100.0 32 ............................ CCCAGCCTTTGCCAGTGTCTTTTTATATAAGC 33791 28 100.0 32 ............................ GCCACCAAAGGGCAGCAAGAGGCTTACCGTGC 33851 28 100.0 32 ............................ CGTCGGGATAGCCGCAAAATAAAGATAACAAA 33911 28 100.0 32 ............................ TGTATATTTTCTTGTCCTGTATAATCCCGATA 33971 28 100.0 32 ............................ CAACACATCGGGATCAAACTTGATCAGGTCAA 34031 28 100.0 32 ............................ AAAGTGCTCATCCTAGGCCAGCACGCCACCTT 34091 28 100.0 32 ............................ GCCAAGCCCGCTGAGGGCATGAGCATCAACGA 34151 28 100.0 32 ............................ AGACCCGTATACACGGGCGACGGCTGGTGCAT 34211 28 100.0 32 ............................ AAGCAGGCAAAGACCTTTAATCGAGCGTGGGT 34271 28 100.0 32 ............................ TAGTATGAAAAAAGTCAAAGCAATCAATACCG 34331 28 100.0 32 ............................ TCTTTGTAGTGCAATCCGTCACGCATACCCTT 34391 28 100.0 32 ............................ GCGTTGTCCGCGTCTTTCAGACTTTAGCCGAA 34451 28 100.0 32 ............................ GCACGGCGTTTGGCTCATCACTGCGGGCATTG 34511 28 100.0 32 ............................ CGCTTTTCGTGTTTCCGTTCTTCTGTGCTATG 34571 28 100.0 32 ............................ GCCACCAAAGGGCAGCAAGAGGCTTACCGTGC 34631 28 100.0 32 ............................ CGTCGGGATAGCCGCAAAATAAAGATAACAAA 34691 28 100.0 32 ............................ TGTATATTTTCTTGTCCTGTATAATCCCGATA 34751 28 100.0 32 ............................ CAACACATCGGGATCAAACTTGATCAGGTCAA 34811 28 100.0 32 ............................ AAAGTGCTCATCCTAGGCCAGCACGCCACCTT 34871 28 100.0 32 ............................ GTGGCACTCAGTTCCGGCAATGGGCTACCCGG 34931 28 100.0 32 ............................ AACTCAAGCGCGGCAACCAAGCAGCGGTTGCC 34991 28 100.0 32 ............................ GCCTTGTGCCTAATGCGCTAACACAGGCTATC 35051 28 100.0 32 ............................ TATAGCGCTCCTTACATAGACCCCTTTGATAA 35111 28 100.0 32 ............................ CGCACGTACTTATACTTTGAGCACTGGACATC 35171 28 100.0 32 ............................ TCAAAGACAAGCGTGTGCACGATCCGCTCAAG 35231 28 100.0 32 ............................ TATAAAAGTACAATCTTAACACTGTACGATTA 35291 28 100.0 32 ............................ AACACATAGGCACAAAAAAGCCCCTATGGGCT 35351 28 100.0 32 ............................ CTTCTGATACGTGCTTGCGATTAGTCGCAATC 35411 28 100.0 32 ............................ GTAATGACAAGCGCGTTTTTGGGCCTGAAAAA 35471 28 100.0 32 ............................ GAACTCAACGCTTACGAAGAAGACAAGGGAAG 35531 28 100.0 32 ............................ TGTGGCGTCAAAAGTTCGGCATCCATGCCTAA 35591 28 100.0 32 ............................ AGCGAGGTCATGAGCGAAGACGAGTACGTATA 35651 28 100.0 32 ............................ GGACTGTGCTGCGGCCTCATAGATGCGGCCAA 35711 28 100.0 32 ............................ TCTTGAGCGCTCACGCCTCGCATAATTCTGTA 35771 28 100.0 32 ............................ ATTGATTTAATGATGGCTTTTTTCTGGGGGTT 35831 28 100.0 32 ............................ TTGGGATTGTTTTTCCCGTCTCCCAGCGCCAA 35891 28 100.0 32 ............................ TGACGCTGTGTTGATTGGTGTTACAGCAACGC 35951 28 100.0 32 ............................ TCTGGGACCCCACCGTTTTGTTACCGCCCCAA 36011 28 100.0 32 ............................ TATAATCCTGGGTAAACCGTGCCGTTTGAGGT 36071 28 100.0 32 ............................ AGTGTGGACGGCAGGGACGTATACCCGAGGCC 36131 28 85.7 0 ........................ACTT | ========== ====== ====== ====== ============================ ================================ ================== 117 28 99.9 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : GATGTAAGTTACGTCAGCTTTGTACGCAAACCGGTGAAATCACCCGAACGAGTGGAGCAAGAGATGCAGCAAAAGGCCACCCTATGGGCAGCAAAATCCGGTAAACCCTTAGTGGAATGCTTAGCGGATTTGCAACAAAGCAAGCCGATAGCCTGGTGTACTTTGCCGTTTATTTACTTGCACAGTCAACAAACCAAGCAATGCTCGCCGGATAAAAGCAGCAAATTCCCGCTGTTTATTGAGATGCTGCCTCAAAGTACAGCATTGGAAGGACAGTTCAATTGCTATGGGCTAAGCCAAAAAGGGAGGACACAGCAGACATTAGCCACTGTTCCGCATTTTTAGACCTTAGAGAAAGGGTAAGTGTTTACCCTTTCTTTTTGCTCTTTAAAAATAGGTTTAAAATACAATAAGTTGTGCTGGATGGCTTTCAACAAGGTAAAAATACGGTTTTTTCCCTAAGTCTCTATTGCAACTTATTTTTATCTGTTTATTCTATT # Right flank : TTTTGTGTATCTTAATTCTAATTTTAGCCTATGCCAGTCTGTTGCTGTCATTTGATCGGCATACAGGCTACAAGCAAAGGCTTGCCTTGAATGAAGAGGCTTTACTTGGAATCGGATATAGCTTCTGCCAAGCCATAAAGGGACAAGACGTGCTGCCTGTACTTGTGTATCGGCCCATTGTAAACGCGGTGTTGGTTCAGCAAACAGAATCAAGCAGTGTAAGCTTTGGGTTTTTTGGTAATCTTGGTAACTCCAAAACCCCCAAAGCACACTGCCTAAAATAACAGCGATGAGTGCTGGTCCGCCAAGGTGGCTTAGCAGGTAATAGCTGAGAAGAATCAGCAAAGGCAAGGCCATTCCCCAGCTGATAACCAGCACATAACGTGCATAATTAGAGGGTGCGATATTGATCTGAATTGGTGTTTTCTGCATGGTCGATGATCATCTCGACAATACGTTTGTGTTCAGAATCTTCTGGCAATTCGCGACGCATCATCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 165570-169135 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYH01000006.1 Pseudospirillum japonicum strain DSM 7165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165570 28 100.0 33 ............................ TCAATACTCCTGCTTTGATTAAGCAGTGTTTAC 165631 28 100.0 33 ............................ TAAGTTTGATGCTTTGCCAAGTTCTTTAAAGCT 165692 28 100.0 33 ............................ CAAGTGCGCACCTTTGTACCTGCCTTCCCTTCC 165753 28 100.0 33 ............................ TAGAAAAACGCTAGTCCTTGTCCCCAAAAATTC 165814 28 100.0 33 ............................ CGTGCGGCTTCTTATTTTTCATTCGTTCCGCTG 165875 28 100.0 33 ............................ TCGATACATCAGCGTAAAAGTCTTCCAGTGATC 165936 28 100.0 33 ............................ CCCCAAGAATCGGCTCGAGCCCTTGATTTATCA 165997 28 100.0 33 ............................ TACTTTTCGGCATCCATAGCTCTTGCTACAACC 166058 28 100.0 33 ............................ CGATTAAAGACTTCCCCGCCCCCGTTGCTAGAT 166119 28 100.0 33 ............................ TGGAATCAAGCGTGCTGCGTCATTTGCGAGCGA 166180 28 100.0 33 ............................ CCCTGTTTCTATATAGTCCCAGTGGCTCATTTG 166241 28 100.0 33 ............................ CATTCAAATCCGCCGCGATGCCGAGGGACGCTA 166302 28 100.0 33 ............................ TCTGCTCGGAGCGCGTGCCGATTTTGTCTAAGC 166363 28 100.0 33 ............................ TTTTGCCGGTTTCTAAGCCGACCTTGCGAGCAG 166424 28 100.0 33 ............................ CGATGGGCACTACATCACGCGGGCCTAAGTTAA 166485 28 100.0 33 ............................ TAACATGGACTTTGCAAGTTTAGACACTCGTGA 166546 28 100.0 33 ............................ TATCCATCATAGGAGTTTTATGTATGTCAAATG 166607 28 100.0 33 ............................ CAGCGCTTCTTGCTCAACGGGTGTCAGATTATC 166668 28 100.0 33 ............................ CGATCTGCATAAGGCTGCTATGGCGAAAGGTAA 166729 28 100.0 33 ............................ TTATGATAACTTGATCAAATTTAGCGAATCCGG 166790 28 100.0 33 ............................ CGCCGCCATTGCTGCGCATGTTTTGCAGACCAA 166851 28 100.0 33 ............................ CAATACAAGCCTTGCTCAAGCGCAAGCGCAAAA 166912 28 100.0 33 ............................ CCAGTGACCAAGTTGTTAGCAGACGATCCCCAG 166973 28 100.0 33 ............................ CGCCAAGTAAATTCACTGCTTCAATAGTGGAAT 167034 28 100.0 33 ............................ TAAAGTGGATTGATCTGGATGTTAAAGACCGCT 167095 28 100.0 33 ............................ TCTATCCCACGAAGCCTTTAAAGGCTATGTGGG 167156 28 100.0 33 ............................ CAGCTTTCCAGAAGAAAGCCAGAGCGCAGAAAT 167217 28 100.0 33 ............................ TGGTTTTTTTGATTTAAGAGATTACGGGGATAA 167278 28 100.0 33 ............................ TGGGGGTTATTTTACTTTTCAAAGGGTTATAAA 167339 28 100.0 33 ............................ CCAAGACTTGATGCAGCAGCTTTTGCGCAAGAC 167400 28 100.0 33 ............................ TAGAAACAGACCAGCCGAAGCTGTCATCAGCGG 167461 28 100.0 33 ............................ CGTGAAAACGCGCGTAAATTCCGCCAAGAGATC 167522 28 100.0 33 ............................ CTTATACAGCATCTGCATTACTGGGTACTGTCA 167583 28 100.0 33 ............................ TCATTGAAGATGGTCTCCGTGTTGCTGAGCTGC 167644 28 100.0 33 ............................ CTATCTTGCTACGGCAACGCCGACGACTTTGCC 167705 28 100.0 33 ............................ TGTACGCTTTACCAGCCTCACTCAAACCAGACG 167766 28 100.0 33 ............................ TATGATCGCAAAGCAATACTGAGCAAAGCTTGG 167827 28 100.0 33 ............................ CGTGTGATCCTGGTGAGGACATATCTGCTATCA 167888 28 100.0 33 ............................ TTTTGCTGGTAGATGCTTTCAAGCGAGCTTTTT 167949 28 100.0 33 ............................ TACACTCTAAAAGATCATCAACGTCACCGACAT 168010 28 100.0 33 ............................ TAGTGACATCAAATACAGATATGGAGTTTTGCA 168071 28 100.0 33 ............................ TCCGGCACGCTGGAAGGGTTGCTTGGATAAAGT 168132 28 100.0 33 ............................ TTTTAGAGCCGTGACCCAGTTTGTTATGTCTTC 168193 28 100.0 33 ............................ TAGAAGTGATCTTTTAACCTTTGTGCAAACAAT 168254 28 100.0 33 ............................ CTTCACTAGTGCTTAGGGGGTTTGATGCCAACC 168315 28 100.0 33 ............................ CTAAAGTCGCCCCAAGCTATCAGCTGGGGCAAA 168376 28 100.0 33 ............................ CAGCTTGTTGGCGGGGGCACGCACCCTTTGCTT 168437 28 100.0 33 ............................ TTGTGGAGTCTCATTTGGCGATAGAGGCTAAGG 168498 28 100.0 33 ............................ TGCTTTGCAAGGTTCTTTGTACTTCTAGCAACT 168559 28 100.0 33 ............................ CCCCGCTGAATGGCGGGGATGTTTAGAACCCTT 168620 28 100.0 33 ............................ CAGTGGTATAGCGTCTTACAGAAGTATGCCTTC 168681 28 100.0 33 ............................ CCCTCCCCCGCACCACTGCTTGATGACACGCTA 168742 28 100.0 33 ............................ CCATCTCACTTTTGTGCAGCTCTGCGCGGTAAC 168803 28 100.0 33 ............................ TGGCCGCAAAGGCACCATACACCTCGTTCATAT 168864 28 100.0 33 ............................ TAACTTTATTAAGTGGTGGTGGCGGTCTATAGA 168925 28 100.0 33 ............................ CTAGTTCATAAGTTCGAGGGGGGCGACACGGTC 168986 28 100.0 33 ............................ TGGCGGCTGGGGTGGCAGTATCGTGCAGTCATG 169047 28 100.0 33 ............................ CAAGCAAGGATGCAAGCTCATGTTAATGAATGA 169108 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.9 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCCCTGTGTATTGATCTAGCCTTTTATCTGACCCGTGAGATGGCAGGCCGGTATGATAAACACAAGGTATCAGCAGCATTCCGTAAGCGGGTTATTCAGATGGATTTGCTGAAACAGGTCACTTCGGATATCAATGAGTTGATGGGGGTGCGTCGTGCTCGTCGTATTAGCAAATGATCTACCACCTGCGGTACGTGGCCGGATGAAACTTTGGTTTATCGAGCCGCGTCCTAATGTGTTTGTCTCTGGTGTGAAAGATTCTGTTGCGCAAACGGTTGTGGATTATCTGATCAAGCATTGTCCGGTTGATTCCGGCCTGATGCTGTTTCGTAGTATTCCAAAACCTCCGGGTTATGAGATTCGCTACAAAGGCAAAGTCCGAAAACCTATTACTGAAATTTGTGGATTACAGTTGATTATTGAAACCCTAAAAAATCCATAAATACTATATTTGGTGCTTGCAAGGATGCTCTTTAACAATATACTGGT # Right flank : CCAGCAAACATCCTTGTTTGCTACGTTCAAAGAAAATCTTCAAAAATGACTTAAACACTCATTTTGCTTTGCAAAAAAGTGAGCAAGGTTTGGGCTTCCACCAAGGTTGCCTCAGTATCACGGCGGCCCTTATATTCTATTTGGCCTTGTTTTAAACTGCGTTCCCCGATAACCAAGCGATGCGGAATCCCCATCAGCTCAAGATCCGCAAATTTAACGCCCGGACGCTCATCACGATCATCAAGCAGAACATCAAAACCAGCTGAGGTTAATTCCTGATATAAGCGCTCGGAGGTTTCGCGTACTAACTCAGATTTATGTGCATTCATAGGCACAAGTGCGATATGGAAAGGTGCAATAGCATCTGGCCAAATAATGCCTTGTTCATCGTGATTTTGTTCTATGGCTGCGGCAACCACGCGGGTGACACCAATGCCATAACATCCCATCATCATAGGGCGTTGCTGGCCTTGTTCATCCAAGATGGTCGCTTTCATCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //