Array 1 100-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRAF01000007.1 Pediococcus damnosus strain P58 Scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 100 31 100.0 35 ............................... TTATTAGGCATAATTCTAAAGTTTATGAGTTTTAG 166 31 100.0 35 ............................... AGTTTAACCATGAAAGTATTTCTGATGAGTTTTAG 232 30 77.4 0 ..............C.CT...G..T....T- | GG [245] Deletion [262] ========== ====== ====== ====== =============================== =================================== ================== 3 31 92.5 35 AAGGATGTTAAATCAATAAGGTTAAACCCCA # Left flank : GGATTCACAGTAGCATTGATTATTTAACTCCAAATGAAAAGGAAAAATTAGTCGCTTAAATTATACATAAAATGTGTCCAGATTCTTGACCTAAATCCAA # Right flank : TATTGGCCTTTTTTGTTTCTGTGCTATACTAGGCATTAAAAGCGTTCATTAGGACTGTCCAAAAGGAAGGCTGAAAATGGCTAAAATTGGTTATGCGCGTGTGAGTTCCAAGGAGCAACATTTAGATCGACAGTTAGCGGCTTTAAAAGGCGTTGATAAACTATTTTCAGATAAGTTAAGTGGGGCTAACACCAAGCGACCTGAACTGCAAAAAATGCTGGCCTATATCCGTGAAGGCGATATTGTCCTGGTTACTGAATTAGACCGCTTGGGCCGAAACAACCAGGACTTAACTAAGATTATGAACACCATTCAGAACAAAGGTGCCACCCTAGATGTGTTGAATTTGCCGTCCATGACGGGGATTGCGGATCCTAACTTGCGTCAACTGATGACTAACTTAATCATTGAACTGTATAAGTATCAGGCCGAAAGTGAACGGAAGCGGATTATTGAGCGTCAACAACAGGGGATTTCCCTGGCCAAACAGCAGGGGAAAT # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGGATGTTAAATCAATAAGGTTAAACCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 870242-869017 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRAF01000001.1 Pediococcus damnosus strain P58 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 870241 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 870175 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 870108 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 870042 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 869976 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 869910 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 869844 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 869778 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 869712 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 869646 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 869580 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 869514 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 869448 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCGGA 869382 36 100.0 30 .................................... ATCTTATCTGGCATTTCATCACACATACGT 869316 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 869250 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 869184 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 869118 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 869052 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.6 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //