Array 1 2860-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000036.1 Desulfovibrio sp. OH1209_COT-279 scaffold_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2859 35 100.0 40 ................................... GACTCTCGTAGTTCTTTAATAATTTCAGCCATTTGCGCTC 2784 35 100.0 39 ................................... GCGGGCGGTCGGCGGCCTAAATGTGCGCTCGCCCCACTT 2710 35 100.0 40 ................................... ACGCAAAGCAGTTTTTTGTTTAGGACGCAAGTAGTTGGAA 2635 35 100.0 34 ................................... CAAATACTGGCGGTTGGTATGTGCCGTTTGCGGC 2566 35 100.0 39 ................................... TTTGGTAGGTGGCGTCGGCATTCAAACGCTCCCGGAGGG 2492 35 100.0 37 ................................... CCTTGCCCTTGAGCTTGTTATCTCAAATTTTGCCGCC 2420 35 100.0 37 ................................... ACAAACTCGCATTCGTTGTCCTAGCTAAAGATTGTGT 2348 35 100.0 40 ................................... GCTGCCGTTTGCGAAGCTCTTGCTTCGCGGGTGTAACTAT 2273 35 100.0 35 ................................... GTTGCCCCTCTCCACGGAAAAATGTCAACTGCGGC 2203 35 100.0 42 ................................... GCGTATGGTCGCCCGTGGACTCCAAGGGCATGACGCATTTGC 2126 35 100.0 38 ................................... CCGAACCGCCCTGAGCTTTGTGGCCGTGGACGCGCTGG 2053 35 100.0 39 ................................... GCAAGGCCTCCATCAGCGTGACCACGGACATCGCTTCTG 1979 35 100.0 38 ................................... GAAGCCAATCTGGGTGACAAGACCAGTGAAATCGATGT 1906 35 100.0 40 ................................... ATTGAACCATGGTCTTGCGAAACATCTCCAGTACAGCAAT 1831 35 100.0 40 ................................... GATGTCCTTTCGGCGGCACAGCTCCCGAAGCTCCGCGAGG 1756 35 100.0 37 ................................... ACGGGTCTGCCGGGCGGCATGGTGGTGCTCACGGCCG 1684 35 100.0 39 ................................... AAACGGTATTTTGGGTGGTATACTGGGTGGTATCTCTAC 1610 35 100.0 41 ................................... CACTGTCCACAGGACTGACATGGTGGAGGACATGTCAGGAC 1534 35 100.0 39 ................................... TTTATGAGCCCACCGCAGGTTTTTTACGAATTGTTCCTG 1460 35 100.0 36 ................................... GTTGAGGAAGTTGACCACCTTGTTGTAGATCTGACC 1389 35 100.0 34 ................................... TTTGGGCATCATCGAAATAGTGGGTTTTGCTTGC 1320 35 100.0 41 ................................... GATGCCTGGTCGCCCAGAAACCCGTACATATTGTGCGCATC 1244 35 100.0 38 ................................... GATCTCGAAAAGCTCGGAAGCAAGCCAGCGATAATCAC 1171 35 100.0 41 ................................... GAGAGCCGCATTCTCCAGTGGAGACATAGCTGGTGTACCAC 1095 35 100.0 38 ................................... TGTGACAGACACACCGATTCGGTGTCTCACTACTTGGT 1022 35 100.0 37 ................................... AAGCGCATCTGTTTCACCCCACCAATCCGTGTAATAA 950 35 100.0 42 ................................... CCACCTCACCATACGGAGTACCGAATATACCACATCACGACA 873 35 100.0 38 ................................... AGGGCAAGGGAATTGGCGTTAAGGATGGACCTCGCACT 800 35 100.0 39 ................................... GAATAGAGTTGATTCGATGCAGACTGCCCTTCCCCGCGT 726 35 100.0 40 ................................... GAGCGCCAGCTTGCTCATGTTGAAGGGAATAAAATCCGGG 651 35 100.0 41 ................................... GCAACAGCAGCCCCTACGATCCGGCGCGCCACCGCCTGACC 575 35 100.0 38 ................................... GAAGGCTCCTGCAAACACCATCTTTGTCACCACCTTCT 502 35 100.0 39 ................................... CCTGTGTACTTTGCTCCCAACGTGGTCGCTGCCTCCCAG 428 35 100.0 41 ................................... AAGATATGCCTCCACTCCCTGTAGTTAGCTGTAACTACAAT 352 35 100.0 41 ................................... TTCGCTGTAACTACAGCTTCCGTCTTCAGAGCATTAGGAAG 276 35 100.0 42 ................................... GCGGCCAGGACGTTGATCACAATCAGGATTGAGGGCAGCAGC 199 35 100.0 37 ................................... CCGTGGCATCCACCACACGAGTTCCCCCGGTGTAGCT 127 34 94.3 0 ...............................-..T | ========== ====== ====== ====== =================================== ========================================== ================== 38 35 99.9 39 GTAGAAATAGACCTGAATTGAAAAGGGATTAAGAC # Left flank : ACGGCATCAAGATTTTTCCGCTGTGTGCCGACTGCCAGGGCAAAAAATTCGGGATGGGCAAGGTGTGCTTTTCCGTAAAGTCTCCCCGCTGGCTCGTCATTTGAGCACGCAAAGGCTCTGTCCGCGGCAGGCTGGCCTTCAACCTGCCCCCCCATTGGACCGTGGGACGTCATTCCAGGCGTTGCCCCCGGCGCGCGTCACGGTTCACTCGGGCAGGCTTTGCTTTTTTCGGGCATTGGGGTAACCTGCAACAGAAGGAGAGAGAGCGTTCGGGCTGTTTTGCGCGGGTGTCGGGCCAAAATTGGGCAAAATTGTTAACCCGCTGAAAATGCTTGATATGTGTGAAGAAGGCTCCGCAAGACCCGCGCACAATTTTTGATAAACAGATCAACATGTTACAAGGGAGGATGCAAAAATGGGCCCTCATGACGAGCCAATGTCGCGAGATCCGCGAAAAATGCCCCGCAAAGCCGCAACTGGCGGGGCTTCCAGAAGGCGAA # Right flank : TAGTGTCGTCAAATTATTGTTGCCCACAATGAGATGCACCTGATTTGCACGGCGGCAAGGAAGGAAAGGCTTCGTTTTGCATAGCGCGTAGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATAGACCTGAATTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 412-185 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000037.1 Desulfovibrio sp. OH1209_COT-279 scaffold_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 411 31 100.0 34 ............................... GCATATGGCAACAATGACAGACACCAGGGCTGCC 346 31 100.0 34 ............................... TCATTTGGCAATATACAAGTCTACATCAGACACT 281 31 100.0 35 ............................... TGTCGAGCCGCTGGTGGGCAGGGAATTTTTCCGGA 215 31 74.2 0 .......................GGGAGCGG | ========== ====== ====== ====== =============================== =================================== ================== 4 31 93.5 35 GTCGCTCCCTCACGGGAGCGTGGATTGAAAC # Left flank : TGACGCCATGATGGTCTTGATCAGCTATGACGTAAACACGCAAGATCCCGCAGGCAGAAAGCGGTTGCGCCAAATTGCCAGGCATTGCGAGAGCTGGGGGCAACGTGTGCAGTTTTCGGTATTTGAATGCCTGGTGGATCCGGCCCAGTGGACTGCATTGCGTGCGAAACTGACAGCCTGCATGGATGAACAAAAAGACAGTCTGCGTTTTTACTATCTGGGAGCAAACTGGAAAAAACGGGTGGAACATCTTGGGGCCAAGGCAGCCTATGATCCAGAAGGGCCGCTTATTCTGTGACAATGCCTTGGTCAGATATGGCTTGCGGGCACCTCAAGCACACGTGTTTTCCCCGGTAGGTGCCCGAAGGTTGTATCTCTTTGATTGCATTCATACAATTTTGATGTTGAGGAGATGCGAGTGTGATTGTAGGCGCTGGAACGGCGTATTCTCGAAAACCAGTATGCAACACTGCGTTATCAAAAAGAAAACAGAGATAACA # Right flank : GTTCACGCCAGGCCCCGGCACAGCCGGGGCCTGGCGTATGTGCGGTTTGGGGTGCATTTCATCTGAAGTGTCGTGCAAGCCAGCCAAAATCAAAACCACCCGCATAGCGGGTGGTTTGCTCAAGCCCTATAAGGGCATATTACCGGCCAGCGCCTAAATGACGCTGGCTTTCACTTCGTTCAAGC # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22805-23355 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000037.1 Desulfovibrio sp. OH1209_COT-279 scaffold_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 22805 36 100.0 39 .................................... GTTGCGCGTGTGGATGCCGTGTGATTGTGGGCTGGTAAC 22880 36 100.0 36 .................................... CCGGAACGCGTTGCCATTCAAAATACGGGTATAAAG 22952 36 100.0 37 .................................... GATACTCCCTGAAGCTACACTCACTGATCTGATCAAC 23025 36 100.0 36 .................................... TCCTTGATTTTTCTACCAAGGCTCACCCGAACCAAA 23097 36 100.0 37 .................................... TATCAGCACACCACCATGATGCAGTCTCTGGATAAGG 23170 36 97.2 39 T................................... GACTGCATGGTGCAGAGATACAGATGCTTCAGATAGGCA 23245 36 100.0 39 .................................... GATACCAGCGTACGTCATTACGATTGCACCAATTCGCGG 23320 36 91.7 0 ................................G.CA | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 98.6 38 AAATCAAATAGACCTGATACAAAAAGGGATTAAGAC # Left flank : GCGCGCAGGAGGCTGCCCAACGCGAGGCAGAATTGTCTTCTCTTTCGCCGATGGAGCGGACCATCGCGGAACTCGCCTTTCCCGAGGCAACAGAAATACAAAGCAGCGCGCTTTTTGGAAAGCTTGATGGCATGACGCCCGAGCTTCAGATCCAGGCGGCGGAGGCATTGAAAGCATACTGGAGCCGTATTGGCAAATGGCAGGGAAAGCAATTGTCCCCCAAGCAAACTAAAAAAGTGAAAAAAATCAAGGAAATTCTTGGGGAGTAGACATTTGTGCGCGACCTTCCTGCGGGCTTCTTGTGAACGATGCTATCATGCTGATTGTATTGATATTTGCAACGGATGCGCCGAAAAAGGTCGCGCAGACAATTTTTTCTGTTTTTTCCGTACGTTGGGGAAAAATATGTCCGATTATCCTGTAAAACGGTCCACACAAGGGAAAACCTCGCGAAACAGTGCGCCAAAAGCTACGCCCGCTACCGCCGGAGGAGGTGCGGG # Right flank : GTGTAGTCACGAAATTGTCTAAATTTTCATTTTGTGGCACAGTTCGCTTGTCTTCAACCGTAAGCGAGGAACATATGCCCACAGCAGCCCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCAAATAGACCTGATACAAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3120-90 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000043.1 Desulfovibrio sp. OH1209_COT-279 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3119 28 100.0 32 ............................ TGGAAGCGCCGTTTTTATGTCATGAGCGTTCA 3059 28 100.0 32 ............................ CTTTTATCCAAACGATTAGATAGTGTCAAGTC 2999 28 100.0 32 ............................ TTGCCGCCCTTGGCGGGCTTGGGGGTGGGGGC 2939 28 100.0 32 ............................ TCCACAGCCTCGGCATCCGACAAAAAAACATC 2879 28 100.0 32 ............................ TCAACACATGGTTATTGGGGCAACGGCGGTAA 2819 28 100.0 32 ............................ TCGCTGGCAGTATAATTTGATAGTTGTTCCGT 2759 28 100.0 32 ............................ ACCGCGCCGGCCGGCCCGTAGACCGTCAGCCC 2699 28 100.0 32 ............................ CGCGACGATGCCAAGCGATTCATCTTGAAAGA 2639 28 100.0 32 ............................ AGCATATCCGAGGGCTTTTGCGGCTTCAGCGG 2579 28 100.0 32 ............................ ATTCTGCAAACTACTGTCTTGTTTGCAGTACC 2519 28 100.0 32 ............................ AAACAGGTGCCACAGAGATGGCACATGTGCTC 2459 28 100.0 32 ............................ CAGAAAAAAATCCCCCAGAATACCCAGCCCGC 2399 28 100.0 32 ............................ GTCCAGGGGCGTCTTGACCGCCCGGTCACTGT 2339 28 100.0 32 ............................ CCCGAGGCCGGCCAGATTGTTCCCCGTAGCGG 2279 28 100.0 32 ............................ AGTATCCCGTGACTGACGTGACACGGGCGCGC 2219 28 100.0 32 ............................ ATTTTCAGCCCCGGCAGGGAAAACGCCGGTGT 2159 28 100.0 32 ............................ TTGATGTGCTGCGCGACGAGCTGTCCGACCGC 2099 28 100.0 32 ............................ ACATCGGGCACGCCGCCCTTGCCGGAAAAAAG 2039 28 100.0 32 ............................ TTGATCCACTTCACGTTGTCGCCGAAGGCGCG 1979 28 100.0 32 ............................ TCAACACGGCGGCGGCGGCTTCAGCGGTCGTA 1919 28 100.0 32 ............................ ATTGACATACCCCAACGCTTCCGCAGCTTCCT 1859 28 100.0 33 ............................ GTGCAACTGGTGAAGTCGGATCCTTGTCGCGAC 1798 28 100.0 32 ............................ GTTCATGGCCGCCCGTAAATCTTCCTTGATGT 1738 28 100.0 32 ............................ ATACGACACGCCAGCAGCGCCGCCTCCACCTC 1678 28 100.0 32 ............................ AGCCCCGCGGCGAGAGCGGCGAAAGCGACAAC 1618 28 100.0 32 ............................ AACGCGGCGGCAGCTTCGGCGGTGGTAAAATA 1558 28 100.0 32 ............................ AAAATGCATACGTTGCCGAGGACTGTTAGTAT 1498 28 100.0 32 ............................ ACCAGCGCATCACGCGCGGCCATGTAGTCCGG 1438 28 100.0 32 ............................ ATATCCATGCAACGCGGTGATACCCTCAACAT 1378 28 100.0 32 ............................ TGCGTAGTCTGGGGTATGGCCCGGATGTTATG 1318 28 100.0 32 ............................ ATTATAACGACATCACGGACATTGGCGACTAC 1258 28 100.0 32 ............................ AAAATGAGCAATCCGGCCCGCGAGGCCGGGCG 1198 28 100.0 32 ............................ TGCTCGCCGCAATCCTCTGGATTGTAATTATC 1138 28 100.0 32 ............................ TGACGGAGCAGGTGTGGCAATCCTCCGTCCCA 1078 28 96.4 32 ...........................A TGCGTGCCTGCTTGGGCCAGCAAAGCGGCGTT 1018 28 100.0 32 ............................ GCGTTGTGGGGGCTTTTATTTCCCCTAACATA 958 28 100.0 32 ............................ TGCTATCAACGCGCAGTACCACAGGTGACTGG 898 28 100.0 32 ............................ TTCGCCTGGCAGCCCTCGCCGCCGCCCAGAGT 838 28 100.0 32 ............................ CTCCTGGTGTCAAAATTTTGACGTTAGGGCAG 778 28 100.0 32 ............................ TCTGGCTCGTGATTGTCGGCGGATTGTTACTC 718 28 100.0 32 ............................ AGCCGCAGGATGCGGGCCGTCCCGAACACGTT 658 28 100.0 32 ............................ ATTTTGCAAACTACTATCTTGTTTGCAGTACC 598 28 100.0 32 ............................ TCGTCCCACCTCGTGACGACGCCATATCTGCA 538 28 100.0 32 ............................ GCTATTTAAGCGTGTGACAGTCCTTTCATACG 478 28 100.0 32 ............................ ACGCGGTAAAATGTCAGCTGCGGTGTATAGCT 418 28 100.0 32 ............................ ATAGTGTCAATTTTTTGACAGTATGACATAGA 358 28 100.0 32 ............................ CGCATGTGGCGGTTTGATTTCACCAGTTTTCG 298 28 100.0 32 ............................ CGTCCATGCCTTCAGAGGCGGACTTTGCTTCC 238 28 100.0 32 ............................ CCCAGCACGGGCCAGCCCCACCAGACGGCGAT 178 28 96.4 32 ........T................... AGCTTGCCGTCCCCGTCCGCCAGCGGGATTTT 118 28 100.0 0 ............................ | T [92] ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.9 32 GTTATCCGCCGCGTAGGCGGTTTAGAAG # Left flank : GAGGTGGGCCAAAGCTCTTTATGCTATCCTTGCAAAATCATTCAACTTCACATTCAGTCGTGAAGAAGGGAAAGGGGCCGGAGCAACTCGTGGCGATGTGTGTAACGGTTTTCTCGATCATGGAAACTACATTGCATATGGCTATGCTTCGGTTGCACTGTGTGGGCTTGGAATAAGTTTTTCTTTGCCCGTACTGCACGGAAAAACTCGTAGGGGGGCATTGGTTTTTGACTTTGCGGATGTTGTGAAAGACGCCTTGGTCATGCCAACGGCCTTTGTTTGCGCTGCGGGAAAAAAGTCGCACAAAGACTTCAGGGAAGAGCTGATAGAGCATTGCCAGCAACAGGAGGTGCTGGACCATCTCTTCAGGTTCATTATTGGCCTGTGCGAAAATAGTGAATAATTTAGGATTGTTATCTGTGCTCAAAAAAAGTAAGGTATAATGGTTTCAGCAGCTTGTAATATAGTGTATATATTATATTTTTTGTGAATCTTGTCTG # Right flank : GTGTCGTCAAACTATGAATAGTATGATAACACCTCTTCCTGCATGACAGGAGAAGCTATGCGCGCACATCGACGACACGATATTTGTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 214-473 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000053.1 Desulfovibrio sp. OH1209_COT-279 scaffold_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 214 35 100.0 38 ................................... GAAGTTGACACACGAGATATCCACCATGATTGACTTGT 287 35 100.0 41 ................................... TTTGACGTGAGTACCAAAGCATATCCTCATGTCTATCCAGA 363 35 100.0 42 ................................... AGGCGGGCAAAAGCTAGTTTGGTGTTAACTTCACCAAAACAA 440 34 94.3 0 ..............................-...T | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 98.6 41 GTAGAAATAGACCTGAATTGAAAAGGGATTAAGAC # Left flank : GCCCCATATGGGCATCGGTGGTATCACCCCGGCCATGAAACTGAAACGGGCGGCATAGGCTCTACTTTTGAGCACTACCACAAATGGGGAGATTACATGCGCACATAGCCTCTCCTGTCATGCAGAAAGAGGTGTTATCATAGGATTCATAGTTTGACGACACTATCTAAGACGCACACCATCGGCAGCCCGTTGTTGCTCTGCGGCGGCTGCG # Right flank : TAGTGTCGTCAAACTATGAATAGTATGATAACACCTCTTCCTGCATGACAGGAGAGGCTGTGTGTGCACATCGACGACACGATATTTGTGGCAGGGTTTGGGAAAATCTACAGGCACATCTTCCCGGCAAAAAGGGGAGTGTTGGTCGCCCGGCCGGAGACAACAGGCTGTTTGTCAACGCGGTATTCTGGATATTTTTTTGATTGTGAGATGGCTTCCAGACGTTTTCGTTACCATGCCTCTGGAGGCCTCTGGCTGGTGTGAAAAACGCGGATAATCTGCACTTCCCGTCCCCGAATACGGTACGGGACGATATACGGATACCGTTCTATCACCAACTCGCGCGTCCCAAACACTCTGCCGGGCCTGCCCATCTCCGGACGCTTTGCCAGCTCGACAACGCGCTTACGGATATGGGCATACATCTCCTGTGCCGCGTCCGGGTCCTCCCTGGCGACATAATCGGAGCCATCTAACCCGCACGATAGCCCCACTTGGCA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATAGACCTGAATTGAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 840-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000101.1 Desulfovibrio sp. OH1209_COT-279 scaffold_100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 839 28 100.0 32 ............................ AATGTCGGCTATGTCGTCGCGATGGCACAGGA 779 28 100.0 32 ............................ AAGGGCTTTTGCGGCTTCAGCGGTCGTAAAAT 719 28 100.0 32 ............................ ACTTACTATGCAGACGGCCAAAGGGGCCAGTA 659 28 100.0 32 ............................ GTTTGGCAGGTGGATAATTCCAATTTTTCGCC 599 28 100.0 32 ............................ ATTGTGCGTCCGTCGGAACCGCTGCTGTTGCT 539 28 100.0 32 ............................ TAACGCTTGGGCTGCTTCAGTCGCTGTAAAAT 479 28 100.0 32 ............................ TCGACCAGTTATTGAACGCGCTGGCCGGGGGC 419 28 100.0 32 ............................ CGTCATTGGGCAAGGCGGGCAAGGGCCGCGAC 359 28 100.0 32 ............................ CAGAGCGGCAGCCGCCTCCGCTGTAGTAAAAT 299 28 100.0 32 ............................ CAGAGCGGCAGCGGCTTCGGCGGTCGTAAAAT 239 28 100.0 32 ............................ AGGGTATCCGAGCTTTGGTGCAGGAGCGCCTT 179 28 100.0 32 ............................ TCGTTGACCAGTTGTTCGGCGCACACAAAGAT 119 28 96.4 0 .........................G.. | C [93] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTATCCGCCGCGTAGGCGGTTTAGAAG # Left flank : CTACGCGCTACGCAAAACGAAGCCTTTCCTTCCTTGCCGCCGTGCAAATCAGGTGCATCTCATTGTGGGCAAAAATAATTTGACGACACTATCTAGAAGGTCTGCGAAATGCTGGAGGAACGCCTGGGCG # Right flank : GTGTAGTCACGAAATTGTCTAAATTTTCATTTTGTGGCACAGTTCGCTTGTCTTCAACCGTAAGCGAGGAACATATGCCCACAGCAGCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-519 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000129.1 Desulfovibrio sp. OH1209_COT-279 scaffold_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ TAACGCTTGGGCTGCTTCAGTCGCTGTAAAAT 192 28 100.0 32 ............................ AAATGAATGGATAAAGTCAAGCCGTTTGGATA 252 28 100.0 32 ............................ AAAGGGTGTCCGTCCCAAGAGTATCCAGGTGA 312 28 100.0 32 ............................ ATCTCCCGGCATCTGACCAAGGGGCAGAAAAT 372 28 100.0 32 ............................ TACACCTCCTGCGGTATTACGCCGCGTTGTCC 432 28 100.0 32 ............................ AACATCATCAAGGGCATGCACGGCAATACCGA 492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTATCCGCCGCGTAGGCGGTTTAGAAG # Left flank : CGACCCGATACGCGAAAAATGCAGCCTCATTCTTGGCCGCTATTCAGATCAGATGTATCTTTTTATGGGCCTCAATCTCGTGACGACACTATCTAGAAGACCACCACCATCAACGACGCCACCATCAACGAG # Right flank : AAGCAGAGAAATACATCACCCCGGTCATGGTGTAATCCTCACGCCTGTGGGAAAAATACTGTTGTAATCTCCCCATTTGTGGTAGTGCTCAAAAGTAGAGCCTATGCCGCCCGTTTCAGTTTCATGGCCGGGGTGATACCACCGATGCCCATATGGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 141-398 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYK01000137.1 Desulfovibrio sp. OH1209_COT-279 scaffold_136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 141 36 100.0 39 .................................... TGTGTCAAGTCTGAGCCTGTCCGTGCTCTAAGCCATTAG 216 36 100.0 37 .................................... CCCCGGGCAATGAGGAAGGATGCAAACTGCTGGGCGT 289 36 100.0 37 .................................... CGCGTGGCCTCCCTGTTTGGGTTCCCGTCCTCTGCGG 362 36 91.7 0 C...............................C..G | A [381] ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.9 38 AAATCAAATAGACCTGATACAAAAAGGGATTAAGAC # Left flank : TTGCGACCCGATACGCGAAAAATGCAGCCTCATTCTTGGCCGCTATTCAGATCAGATGTATCTTTTTATGGGCCTCAATCTCGTGACGACACTATCTAAGACGCGGCCAGGGCATCCCACTCCTCGGGATAGAGCGAGATA # Right flank : GACTGCGGACGCAGTTCAATTGCGTTTGCAATCTCAAAGTAATGAATTCTCCATCAGGATGGAGCGGTGATATTGGGTAACAGCTAAAGCTGGCGTTTGCGGATGAAATGATAACGTACAGAAAGTTTCGCACATTTGAAAAATGACGTAGCCCTCCAAGTTGGTTAGGTTTTGGTTAGGGCGATCAACCCCCAGACCAACAAGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCAAATAGACCTGATACAAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //