Array 1 258-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVU01000022.1 Corynebacterium diphtheriae bv. gravis strain 933a contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 257 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 195 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 131 36 100.0 27 .................................... GTCAAAAATATTTAGCAGCTGTACGAT 68 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 93.8 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : CGTGGACGCCGACACCACCAACGCCCGCAACTG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 63654-61854 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVU01000006.1 Corynebacterium diphtheriae bv. gravis strain 933a contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63653 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 63592 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 63531 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 63470 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 63409 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 63347 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 63285 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 63224 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 63163 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 63102 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 63041 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 62980 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 62919 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 62858 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 62797 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 62736 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 62675 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 62614 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 62553 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 62492 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 62431 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 62370 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62309 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62248 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 62187 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62126 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62065 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 62004 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 61943 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 61882 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //