Array 1 3106-412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3105 30 86.7 35 T...T.G...A................... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 3040 30 100.0 35 .............................. AACAACATTTATGAATACAAGATCGTCGTCCAACT 2975 30 96.7 37 ....................T......... TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 2908 30 100.0 36 .............................. AGGTGTTTGACAACACGAAACAATGGGAAGACATCA 2842 30 96.7 36 ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 2776 30 96.7 37 ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 2709 30 96.7 37 ....................T......... AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 2642 30 96.7 37 ....................T......... AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT 2575 30 96.7 36 ....................T......... TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG 2509 30 96.7 36 ....................T......... AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 2443 30 96.7 37 ....................T......... ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 2376 30 96.7 37 ....................T......... CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 2309 30 96.7 36 ....................T......... TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 2243 30 96.7 39 ....................T......... AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 2174 30 96.7 35 ....................T......... AGCTCGCACAGACAGAGATACCACAAGCGATCGAG 2109 30 96.7 37 ....................T......... GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 2042 30 96.7 37 ....................T......... AGATGTATCCGGATGGAAGTACCAAAGAGTTCGACAA 1975 30 96.7 36 ....................T......... GTTCATACAAATCTTTCATCGTTCTCGCAACATCGC 1909 30 96.7 37 ....................T......... GATGAAGACGTACTTCGTGAAGAAGATGCTGGAAAAA 1842 30 96.7 38 ....................T......... CAATTGCAGGAATATCCTCCACCTCATACGCCTTCACA 1774 30 100.0 38 .............................. AGAGGTGATCATTTCGAAGAGACGGCAGAGGGAAATAG 1706 30 100.0 37 .............................. AAAACAAAAACAAAAATATATATATAGAAGATAGTAG 1639 30 100.0 36 .............................. AAGCACACCTTACCATCTATTCTTTTCATTGTGGAG 1573 30 100.0 36 .............................. CAATTGAAATTGAGGCGAGGCATCTGAGATTATCGA 1507 30 100.0 37 .............................. TGAGTTCACGAACGTGCTACAAAGAGTAATAGAAGCA 1440 30 100.0 36 .............................. TGTTTTGTCATTATCAGAAGAAGATTTTATACTCAA 1374 30 100.0 36 .............................. GGAAACGGGCTTGTGATGAGCGTTTGCGGGCGTTTC 1308 30 100.0 35 .............................. GTTGTTCTAAGTCTTCAAAAGGATTTACAAGTTTA 1243 30 100.0 37 .............................. AAGGGAACAGAAGGCAAGCAATACCTACGAGATGCGG 1176 30 100.0 36 .............................. ATATAATAAGGAAATATGATTATATCGGATTCGAGA 1110 30 100.0 35 .............................. TAACATCACCACCTTTGCGATTTCTACAACGTATA 1045 30 100.0 37 .............................. TTGTATGATCGCATGTCTTTGTAAAAGAAATAATCGA 978 30 100.0 37 .............................. TTTTCCAGTTGAAGTTGTCTGAGAAAAGGTAAAACTT 911 30 100.0 37 .............................. TCAGGGAACACCTCGTGCCTGAACGTGGGCTTGTCGC 844 30 100.0 36 .............................. TTTTTATCAACGAGAATATGCAACGTTGATATGGAT 778 30 100.0 37 .............................. GAAATTTCGCCAGCAAGTTGCTTGATGCTGGAGTATG 711 30 100.0 37 .............................. CGGTGTATATGGATGTTGGAGAGGACAGTGCTCGCAT 644 30 100.0 37 .............................. TGGGAAATGTCCCCCGAAGACTGGAAAAGGCTTATAT 577 30 100.0 38 .............................. AAACTCTCGACGATGCACAGCAGAACATCTCCGACAGT 509 30 100.0 38 .............................. GATTTTGGGTGTGGATGTCCCCGTTAACAGATCACAGA 441 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 98.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : GGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATCTGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATTT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 369735-369173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 369734 30 73.3 32 A....TG.G..........TGC.....G.. GATCAAAAGGAGCACAATTCACGAGGATCACT 369672 30 100.0 37 .............................. ATCTTCCTTGCGAAATACTCAGAAAATGGCTCTCCTG 369605 30 100.0 37 .............................. TCGACAATGCACTGATTGACTCGGTTTCAGACACCTA 369538 30 100.0 39 .............................. TACCTACCCAGCGCTGTCTTTTCCTGCGGACTCTTCCAC 369469 30 100.0 37 .............................. CAGAGAGGGTTTTCAGAGGATCCTACAGACAAGATTA 369402 30 100.0 36 .............................. TTGGTGTACCTCGTCGAAGGATTGAATGTTATCGCT 369336 30 100.0 37 .............................. GATGTTCTTTCCTAGATGTTCCTCAATCTCCACAAGT 369269 30 100.0 37 .............................. TAATTCAGGGCATTGATGACCTGATCCACGATTGTCT 369202 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTGTTCTCGTTGCAATTGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTTTCCGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGGATTCTTCTGGAATTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTTTGGGTATTCTGGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGGTAGATCCGTTTTCTGTGATTATCGCGTTTGGAGTTTCAGCAAGTGTTGGATTGTTCTTCGGATTCTATCCTGCGTACAGAGCCTCCAGGTTGAGCCCGATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGTAAATATAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTTATTTTGTATCAAAATCGCTGAGAGACTTTTTGAACTGAGGCAAACTCAGGAG # Right flank : CCATTGAGTTCAAAAGGAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGGATTCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 397137-396571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 397136 30 83.3 39 .....TG.....A.......G.G....... AATGAGGTTATTGCTTTTGAGTCGTATCACTGGTTTAGA 397067 30 96.7 36 ....................C......... CGAGATCCGATACTGGGATGAGAATTTAGCACAGGT 397001 30 96.7 39 ....................C......... AAATACGATACTGAAAATGGCAAAGAAACGCGCTCACGT 396932 30 96.7 37 ....................C......... TAGGTGCAGTGGTTGGATTGTAGTAGCTCATACTAGT 396865 30 100.0 37 .............................. TGTCAACGCGCTACGGGCAAATGGTGCTTGAGGTTGA 396798 30 100.0 37 .............................. CTTCCAGCTCAGTACAGGACGAATGCCGTCTGGATCA 396731 30 100.0 35 .............................. ACATGCAAAATCCCAAAACACTCCTCCTTCTCTGG 396666 30 100.0 36 .............................. TTCTCCAGTACACACCACCTTCTACATCAAACCTTC 396600 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAATCACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATTGGAT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 4 409300-410928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 409300 30 93.3 39 ......G.............G......... CTGAAAGAGGGAACGAATGTGTTTATGCGACGAAAACTG 409369 30 96.7 35 ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 409434 30 100.0 37 .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 409501 30 100.0 37 .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 409568 30 100.0 36 .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 409634 30 100.0 36 .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 409700 30 100.0 42 .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 409772 30 100.0 35 .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 409837 30 100.0 39 .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 409906 30 100.0 36 .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 409972 30 100.0 36 .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 410038 30 100.0 36 .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 410104 30 100.0 36 .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 410170 30 100.0 36 .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 410236 30 100.0 35 .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 410301 30 100.0 38 .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 410369 30 100.0 36 .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 410435 30 100.0 37 .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 410502 30 100.0 35 .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 410567 30 100.0 37 .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 410634 30 100.0 36 .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 410700 30 100.0 35 .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 410765 30 100.0 37 .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 410832 30 100.0 37 .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 410899 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 25 30 99.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAACGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACCTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGAAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 5 1520491-1519927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1520490 30 73.3 37 TG...TT.......G.A..C.C........ TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC G [1520483] 1520422 30 96.7 36 ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1520356 30 100.0 36 .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1520290 30 100.0 36 .............................. GTATGATATGTTCCGCAAACTACAACAAGAAGTCCT 1520224 30 100.0 36 .............................. TTAGAAGCCGTTTCTAACCTATAAGATTAGAAAGAT 1520158 30 100.0 35 .............................. TCAATGCGTGTGCGGAAAACGATTTTGCCGTCAGG 1520093 30 100.0 36 .............................. GGACAATTTGAAGGTTTGAGGGAGGGATGAGTATGA 1520027 30 100.0 41 .............................. GGAAGATCCTCGCTTAACAATCCAGAAAGCAGGGGAACTGA 1519956 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 96.7 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAAGAAACTGGTACCGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAACATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCATCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGAATTTT # Right flank : CCGTTGAGTTCAAAAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTGGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCGTTGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGAATCAACCTTCCAATGCCCGGTACACACAATACCTACTTTGTGAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 6 1631805-1632032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1631805 31 100.0 35 ............................... ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCC 1631871 31 96.8 34 A.............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCG 1631936 31 100.0 35 ............................... TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGA 1632002 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 TGTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AGCCAAGGGAAAGACACCGGAGGAAATCTACTCAACAATTTTGAAAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAGCTTCAAGGGTTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAAAGAAATAAAGAAACTCTCGGCGATTTCTCCGAACACCACGGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAGCTTCCACCAACGATCTATGGATTCGAAGAGCTCCGATGCAAAAACGAGAACTGTATCACCAATCCCGCACACGGTGAAAATGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTATTTTATAGCCAAGCTTATCTGGACTCGGTTGG # Right flank : CCCGTTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTTTCCATAAACCATTCTAACATACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAAACAGAAAATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATATTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTAACTTCCTGAATTCAAATCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAGTGCCAGATACACGTATCACCCACTTTGTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 7 1779890-1780716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011108.1 Thermotoga maritima strain Tma100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1779890 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 1779955 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1780022 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1780089 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1780155 30 100.0 37 .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1780222 30 100.0 36 .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1780288 30 100.0 36 .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1780354 30 100.0 37 .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1780421 30 100.0 37 .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1780488 30 100.0 37 .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1780555 30 100.0 36 .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1780621 30 100.0 36 .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1780687 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTTAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAATCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //